BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490805
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38080.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 941 0.0
> AT4G38080.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:17882964-17883612 FORWARD LENGTH=649
Length=649
Score = 941 bits (509), Expect = 0.0
Identities = 589/626 (94%), Gaps = 11/626 (2%)
Strand=Plus/Plus
Query 1 AACCAACAAGAACTAGTCAAAGCGCAATACAGCAG-A--AGTAGCACCATGACTCCTCTC 57
|||||||||||| |||||||||| ||||||||||| | |||||||||||| ||||||||
Sbjct 1 AACCAACAAGAAGTAGTCAAAGCACAATACAGCAGTAGTAGTAGCACCATGGCTCCTCTC 60
Query 58 AAGAACTCCTTTGTAACATCTCTTGTCATTGCACTAACATTCACAAGCTTCTTCACGAGC 117
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 61 AAGAACTCCTTTGTAACATCTCTGGTCATTGCACTAACATTCACAAGCTTCTTCACCAGC 120
Query 118 CTATCCGCTCATCGTCACCTTCTCCAATCAACACCAGTGACTCAGCCTCCAGCTTTAACA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTATCCGCTCATCGTCACCTTCTCCAATCAACACCAGTGACTCAGCCTCCAGCTTTAACA 180
Query 178 TTCCCACCTCTGCCCATAACCACTATGCCACCGCTTCCTTCTCTACCAACTCCAGCACAA 237
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 181 TTCCCACCTCTGCCCAAAACCACTATGCCACCGGTTCCTTCTCTACCAACTCCAGGACAA 240
Query 238 CAAACGTTGCCACAGCCACAACCAACTCTGCCACAGCCCACCGGGTTGCCAATGCCACCA 297
||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 241 CAAACGTTGCCACAGCCACAACCAACTCTGCCACAGCCCACTGGG-T-----TGCCACCG 294
Query 298 ATGCCGAGCACACAGATACCTTCATTGCCCAACCCGGTGCAGCCCACAATCCCTAACATT 357
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 295 ATGCCGAGCACACAGATACCATCATTGCCCAACCAGGTGCAGCCCACAATCCCTAACATT 354
Query 358 CCACAGGTCAACTTCCCTAGCAACTTCCCCTTTAACTTTCCTTTCAACATTCCTTTCCTT 417
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 355 CCACAGATCAACTTCCCTAGCAACTTTCCCTTCAACTTTCCTTTCAACATTCCTTTCCTT 414
Query 418 ACTCCACCACCTTCTAAGTAAGAGAAGTGACAAGCTAGCTCTTTAGCTGTCACAGATTAT 477
|||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 415 ACTCCACCACCTTCAAAGTAAGAGAAGTGA-AAGCTAGCTCATTAGCTGTCACAGATCAT 473
Query 478 TATCCTTCTCTCCTGAGACAGCTTTGTATCACACACTCTACTTTGTGTCAGTTTGTATAC 537
||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 474 TATCCTTCTTTCCTGAGACAGCTTTGGATCACACACTCTGCTTTGTGTCAGTTTGTATAC 533
Query 538 ACATATATGCATTCTTTTGCTGTTGTTTGGTGTCGCCGTCCTCTTTGTTGTTGCTTCCAT 597
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 534 ACATATATGTATTCTTTTGCTGTTGTTTGGTGTCATCGTCCTCTTTGTTGTTGCTTCCAT 593
Query 598 GAGTCA-GTTCCCTTTGTAATATACA 622
||||| ||||| |||||||||||||
Sbjct 594 AAGTCAAGTTCCTTTTGTAATATACA 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5