BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490808

Length=778
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38060.2 | Symbols:  | unknown protein; BEST Arabidopsis tha...   584    4e-166


> AT4G38060.2 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G65480.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr4:17873485-17874803 REVERSE LENGTH=893
Length=893

 Score =  584 bits (316),  Expect = 4e-166
 Identities = 358/378 (95%), Gaps = 3/378 (1%)
 Strand=Plus/Plus

Query  341  TCAATCCAATTCTTGAAATGATGAAGAGACCGATCCCAAGTTGGCCATGGTGGTTATTAG  400
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  TCAATCCGGTTCTTGAAATGATGAAGAGACCGATCCCAAGTTGGCCATGGTGGTTATTAG  301

Query  401  GAGGTAGAAAAGAGAAAGAAACTGAAGCTCTTAAGTTTCCTAAAAATATAACTAGAGTTA  460
            || ||||||||||||||||||||||||||||||||||||||| ||| ||| || |||| |
Sbjct  302  GAAGTAGAAAAGAGAAAGAAACTGAAGCTCTTAAGTTTCCTACAAAGATAGCTCGAGTAA  361

Query  461  ATAAGAGGAAAGAGCTTGAGCTTGAGAGCTTTGGTTCGTCTGGCTCAGAATCTGTAGCTG  520
            ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct  362  ATAAGAGGAAAGAGCTTGAACTTGAGAGCTTTGGTTCGTCTGGCTCTGAATCTGTAGATG  421

Query  521  TTGTTGCTTGTGATGGACCTGAATGGTCTGTTGGATGGACTGAGCCACATGGACCTGATT  580
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  TTGTTGCTGGTGATGGACCTGAATGGTCTGTTGGATGGACTGAGCCACATGGACCTGATT  481

Query  581  TCCAAAGTGATGATGAAGGAGATGATGGTGGCTTCTTAGTGTTGGTTCCTTGTTATAGAG  640
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  482  TCCAAAGTGATGATGAAGGAAATGATGGTGGCTTCTTAGTGTTGGTTCCTTGTTATAGAG  541

Query  641  CTGTCGTTGAAGGTTCTGGTAATAACAA---CCAGCTCTTGAGTGCTGTCAAGAATCTCC  697
            |||| |||||||| ||| ||||||| ||   |||||||||||||||||||||||||||||
Sbjct  542  CTGTTGTTGAAGGCTCTAGTAATAATAATAACCAGCTCTTGAGTGCTGTCAAGAATCTCC  601

Query  698  CCAATGGTTTGCCTCCTG  715
            ||||||||||||||||||
Sbjct  602  CCAATGGTTTGCCTCCTG  619


 Score =  207 bits (112),  Expect = 1e-52
 Identities = 185/216 (86%), Gaps = 22/216 (10%)
 Strand=Plus/Plus

Query  2    GACGAATTTGGTCGGAAGG---ATAATGGAAGGAGATGATCGATAATTTGGGTTTTTAGG  58
            |||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||
Sbjct  9    GACGAATTTGGTCGGAGGGATAATAATGGAAGGAGATGATCGATAATTTGGGTTTTTAGG  68

Query  59   GTTTCTCTTGTCAGATCCttttgaaaattttcactgagtttttgggg-ttttaaaatttc  117
            ||| ||||| || ||||||||||| ||||||||| |  ||||||||| ||||||||||||
Sbjct  69   GTTCCTCTTCTCTGATCCTTTTGATAATTTTCACCGTTTTTTTGGGGGTTTTAAAATTTC  128

Query  118  t--a-------gttgatttcattttcaaattcTGGTGAAACATTCTTTGTTTCGCCGGGT  168
            |  |       ||||||||||||||||||||||||||||||||| |||||   |     |
Sbjct  129  TTCAAATTCTAGTTGATTTCATTTTCAAATTCTGGTGAAACATTATTTGT---G-----T  180

Query  169  TTCAATGGTGAAGCTTAGATCTTGAGCTAAGA-TTT  203
            |||||||||||||||||||||||||||||||| |||
Sbjct  181  TTCAATGGTGAAGCTTAGATCTTGAGCTAAGAATTT  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37826312691


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5