BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490811
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38040.1 | Symbols: | Exostosin family protein | chr4:17867... 2126 0.0
> AT4G38040.1 | Symbols: | Exostosin family protein | chr4:17867438-17869302
FORWARD LENGTH=1512
Length=1512
Score = 2126 bits (1151), Expect = 0.0
Identities = 1287/1352 (95%), Gaps = 11/1352 (1%)
Strand=Plus/Plus
Query 1 GTGAGCTCACACAAAAGACAGCTACAAGAGCTAAATGCAGAGAGATTCAGATCCGACCGA 60
||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||| |
Sbjct 1 GTGAGCTCACACATAAGACAGCAAAAAGAGCTAAATGCAGAGAGCTTCAGATCCGACCAA 60
Query 61 ACCATGACGATCGTTAAACCGTCGCAGTTCTCCTTCTCCGGCGGCGGATCTTCGCCGTTA 120
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ACAATGACGATCGTTAAACCGTCGCAGTTCTCATTCTCCGGCGGCGGATCTTCGCCGTTA 120
Query 121 TGTTCACTCAAAGGCTCACTCCTCACCGTCGCTATTCTCACTTTCGGTTCCCTCTTCTAC 180
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TGTTCACTCAAAAGCTCACTCCTCACCGTCGCTATTCTCACTTTCATTTCCCTCTTCTAC 180
Query 181 CTCTCTCTCAATTCCATGCGCACTTCGCCGCCTTCTCCGGTTATCGTGGTAACGCCGATT 240
||||||||||||||| | |||||||||||||| ||||| || ||||||||||| ||||||
Sbjct 181 CTCTCTCTCAATTCCTTACGCACTTCGCCGCCGTCTCCTGTCATCGTGGTAACACCGATT 240
Query 241 CATGTTCCTCAGACCTTTGTGAATGAAG-ATAAGACTGATAACGACGACGGCGCAGCACC 299
||||||||||| ||||| ||||||| || |||||||||||||||| | | ||||
Sbjct 241 CATGTTCCTCATACCTTCGTGAATG-AGTATAAGACTGATAACGA--A------A-CACC 290
Query 300 GACGACGGAAGCAGAAACTTACTCCGATGTTTATCACTCGCCGGAGGCTTTCCGATTGAA 359
||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 291 GACGATGGAAGAAGAAACCTACTCCGATGTTTATCACTCACCGGAGGCTTTCCGATTGAA 350
Query 360 TTACGCCGAGATGGAGAAGAGATTCAAGGTTTATATTTATCCCGACGGCGATCCAAATAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TTACGCCGAGATGGAGAAGAGATTCAAGGTTTATATTTATCCCGACGGCGATCCAAATAC 410
Query 420 GTTTTATCAGACGCCGAGGAAAGTTACCGGTAAATATGCTAGTGAGGGTTACTTCTTTCA 479
||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct 411 GTTTTATCAAACGCCGAGGAAAGTCACCGGTAAATACGCTAGTGAGGGGTACTTCTTCCA 470
Query 480 GAACATTAGAGAGAGTCGATTTCGAACCCTAGATCCAGAGGAAGCAGATCTCTTCTTCAT 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 471 GAACATTAGAGAGAGTCGATTTCGAACCCTAGATCCAGATGAAGCAGATCTCTTCTTCAT 530
Query 540 TCCAATTTCTTGTCACAAGATGCGAGGCAAAGGAACATCATATGAAAATATGACTGTGAT 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TCCAATCTCTTGTCACAAGATGCGAGGCAAAGGAACATCATATGAAAATATGACTGTGAT 590
Query 600 TGTTCAAAACTATGTTGATGGATTGATAGCTAAGTATCCTTATTGGAATAGAACTTTAGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGTTCAAAACTATGTTGATGGATTGATAGCTAAGTATCCTTATTGGAATAGAACTTTAGG 650
Query 660 AGCAGATCACTTCTTTGTTACCTGTCACGATGTTGGTGTTAGAGCATTTGAGGGATCTCC 719
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 651 AGCAGATCACTTCTTTGTTACATGTCATGATGTTGGTGTTAGAGCATTTGAGGGATCTCC 710
Query 720 GCTTCTGATTAAGAATACAATTAGGGTTGTGTGCTCACCGAGCTACAATGTCGGTTTCAT 779
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 711 GCTTCTGATTAAGAATACTATTAGGGTTGTGTGCTCACCTAGCTACAATGTTGGTTTCAT 770
Query 780 TCCTCACAAAGATGTTGCTTTGCCTCAAGTTCTTCAGCCATTTGCACTCCCTGCTGGTGG 839
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 771 TCCTCACAAAGATGTTGCTTTGCCTCAAGTTCTTCAGCCATTTGCTCTCCCTGCTGGTGG 830
Query 840 AAATGATGTTGAAAATCGGTTGACCCTTGGTTTTTGGGCTGGTCATCGAAATTCCAAGAT 899
|||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 831 AAATGATGTTGAGAATCGGACGACTCTTGGTTTTTGGGCTGGTCATCGAAATTCTAAGAT 890
Query 900 ACGGGTAATACTTGCCCGTGTGTGGGAAAATGACACAGAGCTTGATATTTCAAACAACAG 959
|||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 891 ACGGGTTATACTTGCTCATGTGTGGGAAAACGACACAGAGCTTGATATTTCAAACAACAG 950
Query 960 AATTAACAGAGCTACAGGGCATTTAGTGTATCAGAAGAGATTCTACCGGACTAAATTCTG 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 951 AATTAACAGAGCTACAGGGCATTTGGTGTATCAGAAGAGATTCTACCGGACTAAATTCTG 1010
Query 1020 CATATGCCCCGGTGGTTCTCAAGTCAACAGCGCTCGCATAACGGACTCGATCCATTATGG 1079
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1011 CATATGCCCTGGTGGTTCTCAAGTAAACAGCGCTCGCATAACGGACTCGATCCATTACGG 1070
Query 1080 ATGTATTCCTGTCATATTATCAGACTACTACGACCTGCCTTTCAACGACATCCTGAATTG 1139
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 ATGTATTCCTGTCATATTATCAGACTACTACGACCTCCCTTTCAACGACATCCTGAATTG 1130
Query 1140 GCGAAAATTTGCGGTTGTACTCCGAGAGCAAGATGTTTATAACCTTAAGCAGATCCTCAA 1199
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1131 GCGAAAATTTGCGGTTGTACTCAGAGAGCAAGATGTCTATAACCTTAAGCAGATCCTCAA 1190
Query 1200 GAACATACCTCACTCAGAGTTTGTTTCGTTGCATAACAACTTGGTCAAGGTGCAAAAGCA 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1191 GAACATACCTCACTCAGAGTTTGTTTCGTTGCATAACAACTTGGTCAAGGTGCAGAAGCA 1250
Query 1260 TTTTCAGTGGAACTCACCTCCAGTCAAATTCGACGCATTTCACATGATCATGTATGAACT 1319
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TTTTCAATGGAACTCACCTCCAGTCAAATTCGACGCATTTCACATGATCATGTATGAACT 1310
Query 1320 ATGGTTACGCCACCATGTCATCAAGTACTGAT 1351
||||||||||||||||||| ||||||||||||
Sbjct 1311 ATGGTTACGCCACCATGTCGTCAAGTACTGAT 1342
Score = 209 bits (113), Expect = 5e-53
Identities = 133/142 (94%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 1351 TTCTTCAACCGCGTAGATACAGTCCCAAGCGGaaaaaaaaGCTAGCATGTACACCTCTTG 1410
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1372 TTCTTCAACCGCGTAGATACGGTCCCAAGC--CAAAAAAAGCTAGCATGTACACCTCTTG 1429
Query 1411 TAAGTTTTAA-TATCATAGCTTATAACAGTAACACG-AACAACAACATTTCATTCTTTGA 1468
|||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 1430 TAAGTTTTAAATATCATAGCTTATGACAGTAACACGGAACATCAACATTTCATTCTTTGA 1489
Query 1469 GGAAAATTCAttttttttGTGT 1490
|||||||||||| |||||||||
Sbjct 1490 GGAAAATTCATTATTTTTGTGT 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73493597880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5