BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490814
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38010.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2632 0.0
> AT4G38010.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:17859582-17861261 REVERSE LENGTH=1680
Length=1680
Score = 2632 bits (1425), Expect = 0.0
Identities = 1597/1682 (95%), Gaps = 4/1682 (0%)
Strand=Plus/Plus
Query 1 ATGTACTTAACGGAGAAACCAGTTCTTCTGGAATTGATCAGCCGATGTAGCTCTCTTCGC 60
||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTATTTGCCGGAGAAATCAGTTCTTCTGGAATTGATCAGCCGATGCAGCTCTCTTCGC 60
Query 61 GTTTTCAAACAGATACAGACTCAATTGA-TATCTCGTGATATTCTTCGTGATGAATTATT 119
|||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||| |
Sbjct 61 GTTTTCAAACAGATACAGACTCAATTGATTA-CTCGTGATCTTCTTCGTGATGACTTAAT 119
Query 120 CATCAACAAAGTCGTGACCTTTCTGGGTAAATCCGCAGATTTCGCAACTTACAGCTCTGT 179
||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 120 CATCAACAAAGTCGTGACCTTTCTGGGCAAATCCGCAGATTTTGCATCTTACAGCTCTGT 179
Query 180 AATTCTCCACAGTATCCGTTCTGTGTTGAGCTCTTTCTCATACAACGCGCTTTTATCAAG 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 AATTCTCCACAGTATCCGTTCTGTGTTGAGCTCTTTCTCATACAACACGCTTTTATCAAG 239
Query 240 CTACGCAGTCTGTGATAAACCAAGAATGACGATTTTTGTTTACAGAGTATTTGTGAGTAA 299
||| ||||| ||||||||||||||| |||||||||||| ||||| | ||||||||||||
Sbjct 240 CTATGCAGTTTGTGATAAACCAAGAGTGACGATTTTTGCTTACAAAACATTTGTGAGTAA 299
Query 300 TGGGTTTTCACCGGATATGTTCACGTTTCCTCCAGTTTTCAAGGCTTGTGGGAAGTTTTC 359
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TGGGTTTTCACCGGACATGTTCACGTTTCCTCCAGTTTTTAAGGCTTGTGGGAAGTTTTC 359
Query 360 AGGGATCAGAGAAGGGAAACAGATTCATGGAACTGTCACGAAAATGGGTTTTTATGATGA 419
|||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||
Sbjct 360 AGGGATCAGAGAAGGGAAACAGATTCATGGAATTGTTACGAAGATGGGTTTTTACGATGA 419
Query 420 TATCTATGTGCAAAACTCGCTTGTTCATTTTTATGGTGTGTGTGGAGAATCAAGGAATGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATCTATGTGCAAAACTCGCTTGTTCATTTTTATGGTGTGTGTGGAGAATCAAGGAATGC 479
Query 480 ATGTAAAGTGTTCGATCAAATGCCTGTGAGAGATGTAGTTTCGTGGACTGGTATCATAAC 539
|||||||||||||| | ||||||||||||||||||| |||||||||||||| || |||||
Sbjct 480 ATGTAAAGTGTTCGGTGAAATGCCTGTGAGAGATGTTGTTTCGTGGACTGGGATTATAAC 539
Query 540 TGGTTTCACGAGGACTGGTTTGTATAAGGAAGCTTTGGATACGTTTTCGAAGATGGATGT 599
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TGGTTTCACGAGGACTGGGTTGTATAAGGAAGCTTTGGATACGTTTTCAAAGATGGATGT 599
Query 600 TGAGCCTAATTTGGCTACGTATGTTTGTGCGTTGGTATCGAGTGGGCGGGTAGGGTGTTT 659
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 600 TGAGCCTAATTTGGCTACGTATGTTTGTGTATTGGTCTCAAGTGGGCGGGTAGGGTGTTT 659
Query 660 AAGTTTAGGGAAAGGAATCCATGGATTGATCTTAAAAAGGGCATCTTTGATTAGCTTGGA 719
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 660 AAGTTTAGGGAAAGGAATCCATGGGTTGATCTTAAAAAGGGCATCTTTGATCAGCTTAGA 719
Query 720 GACTGGTAATGCTCTTATAGATATGTATGTGAAATGTGAGCAATTGTCTGATGCGATGAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GACTGGTAATGCTCTTATAGATATGTATGTGAAATGTGAGCAATTGTCTGATGCGATGAG 779
Query 780 AGTCTTTGGTGAATTGCAAAAGAAAGATAAAGTTTCTTGGAATAGTATGATTAGTGGGTT 839
||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGTTTTTGGTGAGTTGGAAAAGAAAGATAAAGTTTCTTGGAATAGTATGATTAGTGGGTT 839
Query 840 GGTTCATTGTGAAAGATCTAACGAGGCGATTGAATTGTTTTCTATGATGCAAACGTCTTC 899
|||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 840 GGTTCACTGTGAAAGATCTAAGGAGGCGATTGACTTGTTTTCTCTGATGCAAACGTCTTC 899
Query 900 GGGTATAAAACCAGATGGGCATATACTTACAAGTGTTCTCTCTGCGTGTGCTAGCTTAGG 959
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGGTATAAAGCCAGATGGGCATATACTTACAAGTGTTCTCTCTGCGTGTGCTAGCTTAGG 959
Query 960 AGCTGTGGATTACGGAAGATGGGTTCATGAGTATGTTTTAAGCGCTGGAATCAAATGGGA 1019
|||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 960 AGCTGTGGATCACGGAAGATGGGTTCATGAGTATATTTTAACCGCTGGAATCAAATGGGA 1019
Query 1020 TACGCATATTGGAACTGCGATTGTTGATATGTATGCAAAATGTGGCTACATCGAAACAGC 1079
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TACGCATATTGGAACTGCCATTGTTGATATGTATGCAAAATGTGGCTACATCGAAACAGC 1079
Query 1080 TTTAAAGATTTTCAACGGAATTAGAAGAAAGAATGTGTTTACTTGGAATGCTCTGTTAGG 1139
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 TTTGGAGATTTTCAACGGAATTAGAAGTAAGAATGTGTTTACTTGGAATGCTCTGTTAGG 1139
Query 1140 TGGTTTAGCTATCCATGGACATGGACATGAATCCCTTAGATACTTCGAAGAAATGGTTAA 1199
|||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1140 TGGTTTAGCTATCCATGGGCATGGACTTGAATCCCTTAGATACTTTGAAGAAATGGTTAA 1199
Query 1200 GCTCGGTTTTAAGCCGAACCTGGTAACTTTTCTTGCGATTTTAAACGCTTGTTGCCACAC 1259
||| ||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||
Sbjct 1200 GCTAGGTTTTAAGCCGAACCTGGTAACTTTTCTCGCGGCTCTAAATGCTTGTTGCCACAC 1259
Query 1260 AGGTTTAGTCGATGAAGGAAGAAGATATTTCCATAAAATGAAAA-CTAGAGAATACAATC 1318
|||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 1260 AGGTTTAGTCGATGAAGGGAGAAGATATTTCCATAAAATGAAAAGC-AGAGAATACAATC 1318
Query 1319 TATCTCCTAAGCTAGAGCATTATGGATGCTTGATTGATTTGTTTTGTAGAGCTGGATTGT 1378
||| |||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1319 TATTTCCTAAGCTAGAACATTATGGATGCATGATTGATTTGCTTTGTAGAGCTGGATTGT 1378
Query 1379 TAGATGAAGCATTGGAACTCATCAAAGCAATGCCGGTTAAACCGGATGTACGAATATGTG 1438
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1379 TAGATGAAGCATTGGAACTCGTCAAAGCAATGCCGGTTAAACCGGATGTACGTATATGTG 1438
Query 1439 GAGCTGTTCTTAGTGCTTGTAAGAGTAGAGGGACATTAATGGAGCTTCCTAAAGAGATAT 1498
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1439 GAGCTATTCTTAGTGCTTGTAAGAATAGAGGGACATTAATGGAGCTTCCTAAAGAGATAT 1498
Query 1499 TAGATAGTTTCTTAGAGATGGAGTTTGAAGATAGTGGTGTTTATGTGTTACTGTCTAATA 1558
|||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1499 TAGATAGTTTTTTAGATATTGAGTTTGAAGATAGTGGTGTTTATGTGTTGCTGTCTAATA 1558
Query 1559 TTTTTGCTGCTAATAGAAGATGGGATGATGTTTCGAGAATCAGGAGGTTGATGAAAGTAA 1618
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1559 TTTTTGCTGCTAATAGAAGATGGGATGATGTTGCGAGAATCAGGAGGTTGATGAAGGTAA 1618
Query 1619 AAGGTATCTCGAAGGTTCCAGGATCAAGTTCTATAGAGAAGTTCATGACTTTAGACCAAT 1678
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1619 AAGGTATCTCGAAGGTTCCAGGATCAAGTTATATAGAGAAGTTTATGACTTTAGACCAAT 1678
Query 1679 GA 1680
||
Sbjct 1679 GA 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5