BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490815
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38000.1 | Symbols: DOF4.7 | DNA binding with one finger 4.7... 1273 0.0
AT1G26790.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 71.3 2e-11
> AT4G38000.1 | Symbols: DOF4.7 | DNA binding with one finger 4.7
| chr4:17858351-17859325 FORWARD LENGTH=975
Length=975
Score = 1273 bits (689), Expect = 0.0
Identities = 842/913 (92%), Gaps = 21/913 (2%)
Strand=Plus/Plus
Query 4 AAACaa-aaaaaGGGTATATAATTCATGATGACGTCATCCCATCAGAGCAACACCACCGG 62
||| || |||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAAATAAAAAGAGTTTATAACTCATGATGACGTCATCCCATCAGAGCAACACCACCGG 120
Query 63 CTTTAAACCACGGAGGATCAAGACGACGGCGAAGCCACCACGTCAGATCAACAACAAAGA 122
||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CTTTAAACCGCGGCGGATCAAGACGACGGCGAAGCCACCACGTCAGATCAATAACAAAGA 180
Query 123 ACCATCTCCGGCGACGCAGCCGGTACTCAAGTGTCCGAGATGTGATTCAGTGAACACCAA 182
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 181 ACCATCTCCGGCGACGCAGCCGGTGCTCAAGTGTCCGAGATGTGATTCAGTCAACACCAA 240
Query 183 ATTCTGTTACTACAACAACTACAGCTTGTCTCAGCCACGTCACTACTGCAAGAACTGTCG 242
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTCTGCTACTACAACAACTACAGCTTGTCTCAGCCACGTCACTACTGCAAGAACTGTCG 300
Query 243 CCGGTACTGGACACGTGGCGGCGCCCTCCGTAACGTCCCCATCGGTGGCTCCACTCGAAA 302
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 TCGTTACTGGACACGTGGCGGCGCCCTCCGTAACGTTCCCATCGGTGGCTCCACTCGAAA 360
Query 303 CAAGAACAAGCCTTGTAGCCTCCACGTCATCTCTTCTCCTCATTTGTTCTCGAACGTGAC 362
||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 361 CAAGAACAAGCCTTGCAGCCTCCAAGTCATCTCTTCTCCTCCTTTGTTCTCGAACGGGAC 420
Query 363 GTCATCGTCGTCTCACGAACTTGTAAGAAACCATCCTTCGACGGCGATGATGATGAGGAG 422
||||||| |||||| || ||||||||||||||||| |||||||| |||||||||| |||
Sbjct 421 GTCATCGGCGTCTCGTGAGCTTGTAAGAAACCATCCATCGACGGCAATGATGATGATGAG 480
Query 423 TTCAGGTGGATTCTCCGGCTACATGTTTCCGTTGGATCCTAA-TTATAACCTTGCATCTT 481
||| ||||||||||||||||| |||||||||||||||||||| || |||||||| || |
Sbjct 481 TTCTGGTGGATTCTCCGGCTATATGTTTCCGTTGGATCCTAACTT-CAACCTTGCCTCGT 539
Query 482 CTTCTATCGAGTCTTTGAGTTCTTTTAACCAAGATTTGCACCAGAAGCTTCAGCAACAAA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTTCTATCGAGTCTTTGAGTTCTTTTAACCAAGATTTGCACCAGAAGCTTCAGCAACAAA 599
Query 542 GACTCGTCACTTCCATGTTTCTCCAAGATTCTCTTCCGGTTAACCAGAAACCGGATATGT 601
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 600 GACTCGTCACTTCCATGTTTCTCCAAGATTCTCTTCCGGTTAACGAGAAAACGGTTATGT 659
Query 602 TTCAGAACGTAGAGTTGATTCCTCCTTCGACGGCGACGACGGATTGGGTTTTCGATAGAT 661
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 660 TTCAGAACGTAGAGTTGATTCCTCCTTCGACGGTGACGACGGATTGGGTTTTCGATAGGT 719
Query 662 CCGCCACAGGAGGAGGAACAACAAGTGGCAATCATGAAGATAATGGTGATGGTGAGGGTA 721
|||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 720 TCGCCACTGGAGGAGGTGCAACAAGTGGCAATCATGAAGATAATGATGATGGGGAGGGTA 779
Query 722 ATTTGGGAAATTGGTACCATAATGTTAATAATAATGCTCTGCTCTAATTACCA-TTATCA 780
||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 780 ATTTGGGAAATTGGTTCCATAATGCTAATAATAATGCTCTGCTCTAATTATCAATTATCA 839
Query 781 TTTACT----A-------A--TATTGTAGCTAGCATGCAGCAGCTATAGCTGAAAAAACT 827
|||||| | | ||||||||||||||||||| |||||| ||||| ||||||
Sbjct 840 TTTACTCTCTATTTCTCTAAATATTGTAGCTAGCATGCAGAAGCTATGGCTGATAAAACT 899
Query 828 AGTAATAATTTTCCCTTTCTTGTAATTTTTAGCATAATAAATA-GTTTAATTTCCAAGAG 886
||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 900 AGTAATAATTTCCCCTTT---GTAATTTTTAGCATAATAAATTTGCTTAATTTCCAAGAG 956
Query 887 AAAAAATGAACTT 899
||||||| |||||
Sbjct 957 AAAAAATTAACTT 969
> AT1G26790.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:9273857-9275312 REVERSE LENGTH=1191
Length=1191
Score = 71.3 bits (38), Expect = 2e-11
Identities = 67/80 (84%), Gaps = 6/80 (8%)
Strand=Plus/Plus
Query 154 TGTCCGAGATGTGATTCAGTG-A-ACACCAAATTCTGTTACTACAACAACTACAGC-TTG 210
||||||||||| | ||| | | |||||||||||||||||||||||||||||| | ||
Sbjct 409 TGTCCGAGATG-CA-ACAGCGCAGACACCAAATTCTGTTACTACAACAACTACAACGTTA 466
Query 211 TCTCAGCCACGTCACTACTG 230
| ||||||||||||| |||
Sbjct 467 AC-CAGCCACGTCACTTCTG 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5