BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490819
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37970.1 | Symbols: ATCAD6, CAD6 | cinnamyl alcohol dehydrog... 1814 0.0
> AT4G37970.1 | Symbols: ATCAD6, CAD6 | cinnamyl alcohol dehydrogenase
6 | chr4:17849648-17852246 FORWARD LENGTH=1217
Length=1217
Score = 1814 bits (982), Expect = 0.0
Identities = 1108/1169 (95%), Gaps = 8/1169 (1%)
Strand=Plus/Plus
Query 1 GAGTGAGAGATGGAGAGATTGTCAGGAGAGAAAGAACAGAGCGTAGAGGCGTTTGGATGG 60
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 16 GAGTGAGAGATGGAGAGATTATCAGGAGAGAAAGAGCAGAGCGTAGAGGCGTTTGGATGG 75
Query 61 GCCGCGAGAGACTCCTCAGGCCATCTCTCTCCCTTTGTCTTTTCTAGAAGGAAAACAGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GCCGCGAGAGACTCCTCAGGCCATCTCTCTCCCTTTGTCTTTTCTAGAAGGAAAACAGGA 135
Query 121 GAGGAGGAAGTGAGAGTGAAGGTGTTATATTGTGGAATATGTCATAGTGATCTCCATTGT 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GAAGAGGAAGTGAGAGTGAAGGTGTTATATTGTGGAATATGTCATAGTGATCTCCATTGT 195
Query 181 CTCAAGAACGAATGGCATTCCTCTACTTACCCTTTGGTTCCTGGTCACGAGATTGTTGGA 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 196 CTCAAGAACGAATGGCATTCCTCTATTTACCCTTTGGTTCCTGGTCACGAGATTATTGGA 255
Query 241 GAAGTGAGTGAGATAGGGAGCAAAGTAAGTAAATTCAATCTTGGAGACAAAGTCGGTGTG 300
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GAAGTGAGTGAAATAGGGAACAAAGTAAGTAAATTCAATCTTGGAGACAAAGTCGGTGTG 315
Query 301 GGATGCATAGTAGATTCATGCCGCACTTGCGAAAGTTGCCGTGAAGATCAAGAGAACTAC 360
|||||||| |||||||| ||| | |||||||| |||||||| ||||||||||| ||||||
Sbjct 316 GGATGCATCGTAGATTCCTGCAGAACTTGCGAGAGTTGCCGAGAAGATCAAGAAAACTAC 375
Query 361 TGCACCAAAGCAGTCGCGACCTATAACGGAGTTCACCATGACGGAACAATTAATTACGGT 420
||||| |||||| |||| |||||||||||||||||||| || ||||| ||||| ||||||
Sbjct 376 TGCACAAAAGCAATCGCAACCTATAACGGAGTTCACCACGATGGAACGATTAACTACGGT 435
Query 421 GGATACTCCGACCACATCGTCGTTGATGAACGTTATGCCGTCAAAATTCCACACACATTG 480
|||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 436 GGATACTCCGACCATATCGTCGTCGATGAACGTTACGCTGTCAAAATTCCACACACATTG 495
Query 481 CCTCTAGCTTCAGCCGCACCTTTGCTTTGTGCAGGCATCTCGATGTACAGTCCTATGAAG 540
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CCTCTAGTTTCGGCCGCACCTTTGCTTTGTGCAGGCATCTCGATGTACAGTCCTATGAAG 555
Query 541 TACTTCGGATTGGCCGGACCGGATAAACATATCGGAATCGTGGGGCTAGGTGGTCTTGGA 600
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 556 TACTTCGGATTGACCGGACCGGATAAACATGTCGGAATCGTGGGGCTAGGTGGTCTTGGA 615
Query 601 CACATTGGGGTGAGATTTGCTAAAGCATTTGGGACTAAAGTCACGGTGATTAGTTCGACC 660
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 616 CACATTGGTGTGAGATTTGCTAAAGCATTTGGGACAAAAGTCACGGTGGTTAGTTCGACC 675
Query 661 ACTGGGAAATCTAAGGATGCTCTTGAAACTCTTGGAGCTGATGGATTCTTGGTTAGTACT 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 676 ACTGGGAAATCTAAGGATGCTCTTGACACTCTTGGAGCTGATGGATTCTTGGTTAGTACT 735
Query 721 GATGAAGACCAAATGAAGGCCGCAACGGGAACTATGGATGGCATAATTGATACAGTTTCT 780
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 736 GATGAAGACCAAATGAAGGCTGCAATGGGAACTATGGATGGCATAATTGATACAGTTTCT 795
Query 781 ACATCGCATTCGATTTCACCTTTAATTGGACTACTCAAATCCAACGGTAAACTTGTTCTA 840
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 796 GCATCGCATTCGATTTCACCTTTGATTGGACTACTCAAATCCAACGGTAAACTTGTTCTA 855
Query 841 CTCGGGGCAACGGAGAAGCCATTTGATATATCTGCATTTTCCTTAATATTGGGACGAAAA 900
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CTCGGTGCAACGGAGAAGCCATTTGATATATCTGCATTTTCCTTAATATTGGGACGAAAA 915
Query 901 TCGATAGCCGGAAGTGGTATTGGAGGAATGAAAGAGACACAAGAGATGATTGATTTTGCG 960
|||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 916 TCGATAGCGGGAAGTGGTATTGGAGGAATGCAAGAGACACAAGAGATGATTGACTTTGCG 975
Query 961 GCTGAGCATGGCATAAAAGCAGAAATTGAGATCATATCCATGGATTATGTGAACACCGCC 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GCAGAGCATGGCATAAAAGCAGAAATTGAGATCATATCCATGGATTATGTGAACACCGCC 1035
Query 1021 ATAGATAGACTGGCAAAAGGGGATGTTAGATATCGATTTGTCATCGACATTGCTAACACA 1080
|| |||||||| || ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 1036 ATGGATAGACTTGCCAAAGGGGATGTTAGATATCGATTTGTCATTGACATTTCTAATACA 1095
Query 1081 TTGGCTGCTACTCGATCTTAATTAAAGTCGATCTTCTATCTATATACGTATTCAAAATCG 1140
|||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 1096 TTGGCTGCTACTCGATCTTAATTAAAGTCGATGTTCTAT--AT----GTATTCAAAATAA 1149
Query 1141 TCTCTGGATTTCAGTCCCACGAAACTTAA 1169
||| |||||||| |||||| ||||||||
Sbjct 1150 TCT--GGATTTCAATCCCACAAAACTTAA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5