BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490820
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37940.1 | Symbols: AGL21 | AGAMOUS-like 21 | chr4:17835572-... 1057 0.0
> AT4G37940.1 | Symbols: AGL21 | AGAMOUS-like 21 | chr4:17835572-17838621
REVERSE LENGTH=715
Length=715
Score = 1057 bits (572), Expect = 0.0
Identities = 641/674 (95%), Gaps = 5/674 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGGGAAGATTGTGATCCAAAGGATCGATGATTCAACGAGTAGACAAGTCACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGGGAAGATTGTGATCCAAAGGATCGATGATTCAACGAGTAGACAAGTCACT 60
Query 61 TTCTCCAAACGAAGAAAGGGTCTTATCAAGAAAGCCAAAGAGCTAGCTATTCTCTGCGAC 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TTCTCCAAACGAAGAAAGGGCCTTATCAAGAAAGCCAAAGAGCTAGCTATTCTCTGTGAT 120
Query 121 GCCGAGGTCGGTCTCATCATCTTCTCTAGCACCGGAAAGCTCTATGACTTTGCAAGCTCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCGAGGTCGGTCTCATCATCTTCTCTAGCACCGGAAAGCTCTATGACTTTGCAAGCTCC 180
Query 181 AGTATGGAGTCGGTTATTGATAGATACAACAAGAGCAAGATCGAGCAACAACAACTAATG 240
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AGCATGAAGTCGGTTATTGATAGATACAACAAGAGCAAGATCGAGCAACAACAACTATTG 240
Query 241 AACCCCGCATCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCTGTTCTAAGGCAAGAATTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 241 AACCCCGCATCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCTGTTCTAAGACAAGAACTG 300
Query 301 CATGCTTTGCAAGAAAATCATCGCAGGCAAATGATGGGAGAACAACTAAATGGTTTAAGC 360
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 301 CATGCTTTGCAAGAAAATCATCG--G-CAAATGATGGGAGAACAGCTAAATGGTTTAAGT 357
Query 361 GTTAACGAGCTAAACAGTCTTGAAAATCAACTTGAAATAAGTTTACGTGGAATTCGTATG 420
||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||
Sbjct 358 GTTAACGAGCTAAACAGTCTTGAGAATCAAATTGAGATAAGTTTGCGTGGAATTCGTATG 417
Query 421 AAAAAGGAACAAATGTTGACTCAAGAAATCCAAGAACTAAGCCAAAAGAGGAATCTCATT 480
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 AGAAAGGAACAACTGTTGACTCAAGAAATCCAAGAACTAAGCCAAAAGAGGAATCTTATT 477
Query 481 CGTCAGGAAAACCTCGATTTATCTAGGAAAGTACAACGGATTCATCAAGAAAATGTGGAG 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CATCAGGAAAACCTCGATTTATCTAGGAAAGTACAACGGATTCATCAAGAAAATGTGGAG 537
Query 541 CTCTACAAGAAGGCTTATACGGAAAACACAAACGGGTTTATACATCATGA-GCTAGCTGT 599
||||||||||||||||||| || ||||||||||||||||| ||| | ||| | |||||||
Sbjct 538 CTCTACAAGAAGGCTTATATGGCAAACACAAACGGGTTTACACACCGTGAAG-TAGCTGT 596
Query 600 CGCGGATGATGAATCACACACTCAGATTCGGCTGCAACTAAGCCAACCTGAGCATTCCGA 659
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 597 TGCGGATGATGAATCACACACTCAGATTCGGCTGCAACTAAGCCAGCCTGAACATTCCGA 656
Query 660 TTATGAGACCCCAC 673
|||||| || ||||
Sbjct 657 TTATGACACTCCAC 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5