BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490828
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37880.1 | Symbols: | LisH/CRA/RING-U-box domains-containin... 2194 0.0
AT2G22690.1 | Symbols: | zinc ion binding | chr2:9649690-96514... 531 1e-149
> AT4G37880.1 | Symbols: | LisH/CRA/RING-U-box domains-containing
protein | chr4:17809681-17811590 FORWARD LENGTH=1608
Length=1608
Score = 2194 bits (1188), Expect = 0.0
Identities = 1482/1616 (92%), Gaps = 51/1616 (3%)
Strand=Plus/Plus
Query 1 ATAATCTGAAGGAGTGATGAGAAAATAAGAACACGAAAACCaaaaaaaaaaaGACAGAAG 60
|||||||||||||||||||||||||| | | ||||||| ||||||||||||||||||||
Sbjct 5 ATAATCTGAAGGAGTGATGAGAAAAT-ATTA-ACGAAAAACAAAAAAAAAAAGACAGAAG 62
Query 61 -------AAAATCACGAAATCTG---------------GTTCGAAGCCAAGTCTGTG-TT 97
|||||||||||||||| | |||||||||||||| || ||
Sbjct 63 ACAAAAAAAAATCACGAAATCTGATTTTCCTCTCTTTTGCTCGAAGCCAAGTCTCTGCTT 122
Query 98 TTACTTTGATCCACGAAACTTCATCTTCTACCTCTCGATCTCAGGTACGATTTTCCTTAG 157
|||||||||||||| |||||||||||| |||||||||| | ||||| || || |||||
Sbjct 123 TTACTTTGATCCAC-CAACTTCATCTTCAACCTCTCGATTTTAGGTAAGA--TT-CTTAG 178
Query 158 AGTGATTTTTGAC-TATCTAAGAATGGAGCTAAAGAGCATTAAGGATGCGTTTGATCGTG 216
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGTGA-TTTTGACTTATCTAAGAATGGAGCTAAAGAGCATTAAGGATGCGTTTGATCGTG 237
Query 217 TTGCGACCAAGCAGAAGCTTTCTTATAGCAAAACAAATGAGATTGTTCAAT-TACTGTCT 275
||||||| ||||||||||| |||||||||||||| ||||||||||||| || | |||||
Sbjct 238 TTGCGACGAAGCAGAAGCTCTCTTATAGCAAAACTAATGAGATTGTTC-ATATGTTGTCT 296
Query 276 CAAGAAATCGACAAGGCTTTGAGTATATTACAGAAGACACCATCATCAGATAC--T-CTG 332
||||||||||| ||||||||||| |||||| || ||||||||||||||||||| | ||
Sbjct 297 CAAGAAATCGATAAGGCTTTGAGCATATTAGAGGAGACACCATCATCAGATACTATGCTT 356
Query 333 CTTGATCATAGATCTATCCTTGCTGATGTGAAGAAAGTGTTTATGGAGATTGCTCCTATC 392
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 357 CTTGATCATAGATCTATCCTCGCTGATGTGAAGAAAGTGTTTATGGAGATTGCTCCAATC 416
Query 393 ACTCAACTTGAAGCTGCTGAGAAAGAACTACATGCGGCTTTGACCAAGTACCCTAAAGTT 452
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 417 ACTCAACTTGAAGCTACTGAGAAAGAGCTACATGCGGCTTTGACCAAGTACCCTAAAGTT 476
Query 453 -TTGGAGAAACAGCTGAATCCAGACATATCAAAGGCTTACAGAAACAATGTCGAGTTCGA 511
|| ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||
Sbjct 477 CTT-GAGAAACAGCTGAATCCAGACATATCAAAGGCTTATAGACACAATGTTGAGTTTGA 535
Query 512 TACTCATATCGTTAACCAGATTATCGCCAACTTTTTCTACCGGCAAGGAATGTTTGACAT 571
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 536 TACTCATATCGTTAACCAGATTATCGCCAACTTTTTCTACCGTCAAGGAATGTTTGACAT 595
Query 572 TGGTGACTGTTTCGTTACTGAAACTGGTGAATCAGAATGTTCCACTAGACAATCTTTTGT 631
|||||||||||| ||| |||||||||||||||| |||||||| || ||||||||||| ||
Sbjct 596 TGGTGACTGTTTTGTTGCTGAAACTGGTGAATCTGAATGTTCTACAAGACAATCTTTCGT 655
Query 632 GGAAATGTATCGGATACTAGAAGCTATGAAGAGACGTGATCTTGAACCAGCTCTTAATTG 691
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 656 GGAGATGTATCGGATACTAGAAGCTATGAAGAGACGAGATCTTGAACCGGCTCTTAATTG 715
Query 692 GGCAGTTTTGAACTCAGACAAACTAAAGCAAGCAAGGTCTGATCTTGAGATGAAGCTTCA 751
||| |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 716 GGCTGTTTCGAACTCTGACAAACTAAAGGAAGCAAGGTCTGATCTTGAGATGAAGCTTCA 775
Query 752 CAGTCTACACTTCCTGGAAATAGCGCAAGGCAAAAACTCCAAAGAAGCTATCAACTACGC 811
||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||| ||
Sbjct 776 TAGTCTACACTTTCTGGAAATAGCACGAGGCAAAAACTCCAAAGAAGCTATCGACTATGC 835
Query 812 GAGAAAACATATTGCCACGTTTGCAGATAGCTGCCTCCCGGAAATCCAGAAGCTCATGTG 871
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 836 GAGAAAGCATATCGCCACGTTTGCAGATAGCTGCCTCCCGGAGATCCAGAAGCTCATGTG 895
Query 872 TTCACTCTTATGGAACAGAAAACTCGATAGATCACCGTACTCCGAGTTTCTCTCTCCCGC 931
||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 896 TTCTCTCTTATGGAACAGAAAACTCGATAAATCACCATACTCCGAGTTTCTCTCCCCCGC 955
Query 932 TCTGTGGAACAATGCAGTCAAAGAGCTAACCCGACAGTACTGCAACCTACTCGGTGAATC 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCTGTGGAACAATGCAGTCAAAGAGCTAACCCGACAGTACTGCAACCTACTCGGTGAATC 1015
Query 992 ATCTGAAAGCCCGTTGAGTATAACAGTAACAGCGGGTACACAAGCGTTACCAGTACTACT 1051
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1016 ATCTGAAAGCCCGTTGAGTATAACAGTAACAGCGGGCACACAAGCGTTACCAGTACTATT 1075
Query 1052 GAAATACATGAACGTG---ATGGCGAACAAGAAGCTTGACTGGCAGACCATGGAACAACT 1108
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1076 GAAATACATGAACGTGGTGATGGCGAATAAGAAGCTTGATTGGCAGACCATGGAACAACT 1135
Query 1109 TCCTGTCGATGCGCAACTATCAGAGGAGTTTCAGTTCCATTCAGTGTTTGTCTGTCCAGT 1168
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1136 TCCTGTTGATGCGCAACTATCCGAGGAGTTTCAGTTTCATTCGGTGTTTGTCTGTCCAGT 1195
Query 1169 CTCTAAAGAACAGTCAAGTGACGACAACCCTCCAATGATGATGTCTTGTGGACATGTGCT 1228
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1196 CTCTAAAGAACAGTCAAGTGATGATAACCCTCCGATGATGATGTCTTGTGGACATGTGCT 1255
Query 1229 TTGCAAGCAGACGATCAACAAAATGTCAAAGAATGGCTCTAAGTCGTCTTTCAAGTGTCC 1288
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1256 TTGCAAGCAGACGATCAACAAAATGTCAAAGAATGGCTCTAAGTCGTCGTTCAAGTGTCC 1315
Query 1289 GTATTGCCCAACCGATGTAGACATCTCGAGGTGTAGGCAGTTACACTTTTGAAACGAAAG 1348
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1316 TTATTGCCCAACCGATGTAGACATCTCAAGGTGTAGGCAGTTGCACTTTTGAAACGAAAG 1375
Query 1349 CTCGGAAAAAACGAATGACCGGTATAAACTGGAACTAAGTTCTGAATCGGTGAAATCTGT 1408
||||| || | | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CTCGGGAATTT-GTACGACCGATATAAACTGGAACTAAGTTCTGAATCGGTGAAATCTGT 1434
Query 1409 GTCAAAAT-GTAACCTTGTGGTGTTCTCTGttt-tttttt-CATGAAGTTTTTTAAAAGA 1465
|||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| ||
Sbjct 1435 GTCAAAATTGTAACCTTGTGGTGTTCTCTGTTTCTTTTTTTCATGAAGTTTTTTAAGTGA 1494
Query 1466 TGAAGCTTTTGTGTACAAATTGATCAGGGGAAGTTTTTAGATGATTTATTGGACATCCCA 1525
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1495 TGGGGCTTTGGTGTACAAATTGATCAGGGGAAGTTTTTAGATGATT----GGACATCCCA 1550
Query 1526 TAAGAATGTGTTTTTGGTGTTGTTGCTCTTTGTTTGTTAAAC-TTTCTGAATATAG 1580
||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct 1551 TAAGAATGTGTTTTTGGTGTTGTTGCTATTTGTTTGTTAAACCTTT-TGAATATAG 1605
> AT2G22690.1 | Symbols: | zinc ion binding | chr2:9649690-9651439
REVERSE LENGTH=1386
Length=1386
Score = 531 bits (287), Expect = 1e-149
Identities = 922/1215 (76%), Gaps = 98/1215 (8%)
Strand=Plus/Plus
Query 166 TTGACTATC-TAAGAATGGAGCTAAAGAGCAT-T-AAGGATGCGTTTGATCGTGTTGCGA 222
|||| |||| | |||||||||||||||| || | || |||||||||||||||||| | |
Sbjct 96 TTGATTATCTTTAGAATGGAGCTAAAGA--ATGTCAAAGATGCGTTTGATCGTGTTACCA 153
Query 223 CCAAGCAGAAGCT-TTCTTATAGCAAAACAAATG-AGATTGT--TCAATTACTGTCTCAA 278
|||||||| || | | ||||||||||| ||| || | || ||| | ||||||||
Sbjct 154 AAAAGCAGAAACTATGC-TATAGCAAAACGCATGAAG-TGGTAGACAA--AATGTCTCAA 209
Query 279 GAAATCGACAAGGCTTTGAGTATATTACAGAAGACACCATCATCAGATACTCTGCTTGAT 338
|||||||||||||| |||| | | || | | ||| | || | || | || ||
Sbjct 210 GAAATCGACAAGGCATTGA--A-A--AC-G-ATACAGGAGGAT-A-AT-C-ATG---AAT 255
Query 339 CATAGATCTATCCTTGCTGATGTGAAG-AAAGTGTTT-ATGGAGATTGCTCCTATCACTC 396
| | | | | |||||||| ||||| ||| | ||| | |||||||||||| |||| ||
Sbjct 256 C-T-G---T-T-GTTGCTGATCTGAAGAAAACT-TTTGA-GGAGATTGCTCCAATCAATC 306
Query 397 AACTTGAAGCTG-CTGAGAAAGAACTACATGCGGCTT-TGACCAAGTACCCTAAAG-TTT 453
||| ||||| | || |||||||| || ||| || || | ||||| ||||| |||| | |
Sbjct 307 TACTAGAAGC-GTCTCAGAAAGAAATAAATG-GGGTTCTTACCAAATACCCGAAAGCTCT 364
Query 454 TGGA-GAAACAGCTGAATCCAGACATATCAAAGGCTTACAGAAACAATGTCGAGTTCGAT 512
| || |||| ||||||||||| ||||| | ||||||||||||| || |||| |||
Sbjct 365 T-GACAAAAC-TCTGAATCCAGATATATCGACGGCTTACAGAAAC---GTTAAGTTTGAT 419
Query 513 ACTCATATC-GTTAACCAGATTA-TCGC-CAACTTTTTCTACCGGCAAGGAATGTTTGAC 569
||||||| | ||| | |||| || | || | | ||||||||| ||||||| |||| |||
Sbjct 420 ACTCATA-CAGTTCATCAGA-TACTAGCTC-AGTTTTTCTACAGGCAAGGCATGTACGAC 476
Query 570 ATTGGTGACTGTTTCGTTACTGAAACTGGT---G--AA-TCAGAATGTTCCACTA-GACA 622
|||||||||||||| || | || |||||| | || | |||| ||| || | |
Sbjct 477 GTTGGTGACTGTTTCATTTCCGAGACTGGTGAGGTTAAGCCTGAATCTTCTGTTACTA-A 535
Query 623 ATCTTTTGTGGAAATGTATCGGATACTAGAAGCTATG-AAGAGACGTGATCTTGAACCAG 681
| |||| |||||||| || |||||| ||||| ||| |||| ||| ||||| | |||||
Sbjct 536 AGCTTTCATGGAAATGAATATGATACTTGAAGCCATGAAAGA-ACGGGATCTCGGACCAG 594
Query 682 CTCTT-AATTGGGCAGTTTTGAACTCAGACAAACTAAAGCAAGCAAGGTCTGATCTTGAG 740
|| || || |||| || || ||||| ||||| |||||| |||||| ||| |||||||||
Sbjct 595 CT-TTGAAATGGGTAGCTTCAAACTCTGACAAGCTAAAGGAAGCAAAGTCAGATCTTGAG 653
Query 741 ATGAAGCTTCACAGTCTACACTTCCTGGAAATAGCGCAAGGCAAAAACTCCAAAGAAGCT 800
|||| |||||||| || ||||| |||| ||||| ||| ||||| |||| ||||||||
Sbjct 654 TTGAAACTTCACAGCCTTCACTTTTTGGAGATAGCTAAAGACAAAACCTCCGAAGAAGCT 713
Query 801 ATCAACTACGCGAGAAAACA-TATTGCCACGT-TT--GCAGATAGCTGCC-T--CCCGGA 853
|||||||||||||||||||| | |||| |||| || |||||||||||| | ||| ||
Sbjct 714 ATCAACTACGCGAGAAAACACT-TTGCTACGTATTCAGCAGATAGCTGCTGTTTCCCTGA 772
Query 854 AATCCAGAAGCTCATGTGTTCACTCTTATGGAACAGAAAACTCGATAGATCACCGTACTC 913
|| ||||| |||||||| || |||||||||| |||||| ||| ||| ||| || |||||
Sbjct 773 GATACAGAAACTCATGTGCTCTCTCTTATGGATCAGAAACCTCAATAAATCCCCATACTC 832
Query 914 CGAGTTTCTCTCTCCCGCTCT-GTGGAACAATGCAGTCAAAGAGCTAACCCGACAGTACT 972
||||| ||||| || | | | ||||| ||| || | ||| || ||||||||||| ||||
Sbjct 833 AGAGTTCCTCTCACCTG-TATTGTGGACCAACGCTGCCAAGGAACTAACCCGACAATACT 891
Query 973 GCAACCTACTCGGTGAATCATCTGAAAGCCCGTTGAGTATAACAGTAACAGCGGGTACAC 1032
||| |||||||||||||||| | || || || || ||| ||||||| |||| ||| |||
Sbjct 892 GCATCCTACTCGGTGAATCACCAGAGAGTCCTTTAAGTGTAACAGTTGCAGCAGGTTCAC 951
Query 1033 AAGCGTTACCAGTAC-TACT-GAAATACATGAACGTGATGGCG-A-ACAAGAAGCTTGAC 1088
||| ||||| | || | | ||| || |||||||| || || | | ||||| ||
Sbjct 952 AAGTTTTACC-G-ACGTTTTTGAAGTATTTGAACGTGCTGCCGGAGAAAAGAAAA--GAG 1007
Query 1089 TGGCAGACCATGGAACAACTTCCTGT-CGATGCGCAACTATCAGAGGAGTTTCAG-TTCC 1146
||||| || ||||| ||||||| ||| | || | |||| || || |||| || | |||
Sbjct 1008 TGGCAAACAATGGAGCAACTTCTTGTACC-TGTGGAACTCTCTGAAGAGTATC-GCTTCT 1065
Query 1147 ATTCAGTGTTTGTCTGTCCAGTCTCTAAAGAACAGTCAAGTGACGACAACCCTCCAATGA 1206
| || || |||||||| || |||||||||||||| || || || || || || || ||||
Sbjct 1066 ACTCGGTCTTTGTCTGCCCTGTCTCTAAAGAACACTCGAGCGAAGATAATCCGCCGATGA 1125
Query 1207 TGAT-GTCTTGTGGACATGTGCTTTGCAAGCAGACGATCAACAAAATGTCAAAGAATGGC 1265
||| | |||| || ||||| |||||||||||| | ||||||| |||||| | ||||||
Sbjct 1126 -GATTGGCTTGCGGTCATGTCCTTTGCAAGCAGTCTATCAACAGAATGTCGAGGAATGGT 1184
Query 1266 TCTAAGTCGTCTTTCAAGTGTCCGTATTGCCCAACCGATGTAGA--CATCTCGAGGTGTA 1323
|| ||| ||| ||||||||||| ||||| ||||| ||| | || | || | || ||||
Sbjct 1185 TC-AAG--GTCGTTCAAGTGTCCTTATTGTCCAACAGATATTGATGCTTCGC-AG-TGTA 1239
Query 1324 GGCAGTTACACTTTT 1338
||||||| | ||||
Sbjct 1240 AGCAGTTATATTTTT 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78011646930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5