BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490831
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37840.1 | Symbols: HKL3 | hexokinase-like 3 | chr4:17790147... 2178 0.0
> AT4G37840.1 | Symbols: HKL3 | hexokinase-like 3 | chr4:17790147-17792198
REVERSE LENGTH=1482
Length=1482
Score = 2178 bits (1179), Expect = 0.0
Identities = 1393/1496 (93%), Gaps = 16/1496 (1%)
Strand=Plus/Plus
Query 1 ATGACTAGGAAAGAGGTTGTTCTGGCCGTGACGGCTGCAACGGTTACGGCGGTTGCAGCA 60
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGACCAGGAAAGAGGTGGTTCTGGCCGTGACGGCTGCAACCATTACGGCGGTTGCAGCA 60
Query 61 GTTGTACTAATGGGTCGGTGGATCCGGAGGAAAGAGCGGCGGCGGAAACATACGCAGAGA 120
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 GGTGTACTAATGGGTCGGTGGATCCGGAGGAAAGAGCGGCGGTTGAAACATACGCAGAGA 120
Query 121 ATTTTGAGAAAATTCGCTAGAGAATGCGCCACGCCGGTTTCGAAACTCTGGGCGGTGGCG 180
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 121 ATTTTGAGGAAATTCGCTAGAGAATGCGCCACGCCGGTTTCGAAGCTTTGGGCGGTGGCG 180
Query 181 GACGCTTTGGTCGCCGACATGACCGCCTCTTTAGCCGCTGCGACCGCCGAGTGTTGTGGT 240
||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 181 GACGCCTTGGTCGCCGACATGACCGCCTCTTTA---------ACCGCCGAGTGTTGCGGT 231
Query 241 TCTCTCAACATGCTTGTTTCATTCGCCGGTTCACTCCCTTCCGGTGATGAGAAAGGAGTA 300
|| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 232 TCCCTCAACATGCTCGTTTCATTCACCGGTTCTCTCCCTTCCGGTGATGAGAAAGGGGTA 291
Query 301 CACTATGGAGTTAACTTGAGAGGCAGGGAACTTTTACTGTTACGTGGGACGTTAGGAGGT 360
||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||| |||
Sbjct 292 CACTATGGAGTCAACTTGAGAGGCAAGGAACTATTACTGTTACGTGGGACGCTAGGTGGT 351
Query 361 AATGAAGAGCCTATTTCTGACGTACATAAGCAGGAGATTCCGATCCCTGAAGATGTTTTA 420
|| |||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 352 AACGAAGAGCCTATTTCCGATGTACAGAAGCATGAGATTCCGATCCCTGACGATGTTTTA 411
Query 421 AATGGTTCATTCAAGGAGCTT-TGCGATTTCATATCATTGGAGCTTGTTAAATTTCTTGC 479
|||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 412 AATGGTTCTTTCAAGGAG-TTGTGCGATTTCATATCATTGGAGCTTGTTAAATTTCTTGC 470
Query 480 GATGAATCCTGGTGAAGAAGCAGAGGAAGTGAATAACCTCGGGTTTACATTGACGCGCTC 539
||||||||| |||| ||||||||| |||||||| || ||||||||||| |||||||||||
Sbjct 471 GATGAATCCCGGTGGAGAAGCAGAAGAAGTGAAGAATCTCGGGTTTACGTTGACGCGCTC 530
Query 540 TGTTGAGCAGATTGGGTCAGGTTCAATCTCGGCTATACATAGGAAGAGTTTAGCAAATGA 599
||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 531 TGTTGAGCAGATTGGGTCACATTCAATCTCGTCGATACATAGGAAGAGTTTAGCAAATGA 590
Query 600 TGATGATGATAAGGTTTTGAAAGATTTGGTGAATGACATGAATGAATCATTGGAAAGACA 659
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 591 CGATGATGAGAAGGTTTTGAAAGATTTGGTGAATGATATGAATGAATCACTGGAAACACA 650
Query 660 CGGTCTGAAAATTCGGATGAACACAGCGCTGGTGGATAATACAATAGGAGAGTTGGCTGG 719
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 651 CGGTCTGAAAATTCGGATGAACACAGCGCTGGTGGATAATACTATAGGAGAATTGGCTGG 710
Query 720 AGGAAGGTATTATCACAAGGACACTGTGGCTGCAGTATCATTAGGTCTGGGAACTAATGC 779
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 711 AGGAAGGTATTATCACAAGGACACTGTGGCTGCAGTATCATTAGGTATGGGAACCAACGC 770
Query 780 TGCTTACATTGAACAAGCTCAAGAGATATCGAGGTGGAAATCCGCAATA-TTCGAGCCAC 838
|||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||
Sbjct 771 TGCTTACATTGAACAAGCTCAAGAGATATCGAGGTGGAAATCTGCGATACGT-GAGCCAC 829
Query 839 AAGAGATCGTTGTTAGCACAGAATGGGGAGATTTCAGATCTTGTCATCTTCCTATAACTG 898
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 830 AAGAGATCGTTGTTAGCACAGAGTGGGGAGATTTCAGATCTTGCCATCTTCCTATAACCG 889
Query 899 AGTTTGATGCTTCTCTTGATGCAGAAAGCTTGAATCCTGGACATCGAGTATTTGAGAAGA 958
|||| |||||||||||||| || |||||||||||||| ||||||||| ||||||||||||
Sbjct 890 AGTTCGATGCTTCTCTTGACGCGGAAAGCTTGAATCCCGGACATCGAATATTTGAGAAGA 949
Query 959 TGGTGTCTGGAAGATACTTAGGGGAGATAGTAAGAAGAGTGTTACTTAGAATGTCTGAAG 1018
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 950 TGGTGTCAGGAAGATACTTAGGGGAGATAGTAAGAAGAGTGTTACTAAAAATGTCTGAAG 1009
Query 1019 AATCTGCTCTCTTTGGAGATACACTGCCTCCAAAACTCACAATTCCTTACATTTTATGGT 1078
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1010 AATCTGCTCTCTTTGGAGATACACTACCTCCAAAACTCACAATTCCTTACATTTTATGGT 1069
Query 1079 CGCCAGATATGGCTGCAATGCATCAAGATATATCCGAAGAACGGGAGATTGTAAACAAAA 1138
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1070 CTCCAGATATGGCTGCAATGCATCAAGATATATCCGAAGAACGGGAGACTGTAAACAAAA 1129
Query 1139 AGCTCAAGGAGGTTTTCGGAATCATGGATTCAACTCTTGCGGCGAGAGAAGTGGTAATTG 1198
|||||||||| |||||||| || ||||||||||||||||||||||||||||| ||| |||
Sbjct 1130 AGCTCAAGGAAGTTTTCGGTATAATGGATTCAACTCTTGCGGCGAGAGAAGTTGTAGTTG 1189
Query 1199 AAGTATGCGATGTAGTCGCGGAACGAGCGGCTCGCACGGCAGGAGCAGGAATAGTTGGGA 1258
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1190 AAGTATGCGATGTAGTCGCGGAACGAGCGGCTCGTTTAGCGGGAGCAGGAATAGTTGGGA 1249
Query 1259 TGATAAAGAAGCTTGGAAGGTTAGAGAAGAAAATGAGCATTGTGATAGTTGAAGGAGGAT 1318
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TGATAAAGAAGCTTGGAAGATTAGAGAAGAAAATGAGCATTGTGATAGTTGAAGGAGGAT 1309
Query 1319 TGTATGATCATTATAGAGTCTTTAGAAACTATCTTCATAGCAGCGTTTGGGAAATGCTCG 1378
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1310 TGTATGATCATTATAGGGTATTTAGAAACTATCTTCATAGCAGCGTTTGGGAAATGCTTG 1369
Query 1379 GTGATGAGTTATCAGATCACGTTGTCATTGAGCATTCTCACGGTGGATCTGCTGCCGGAG 1438
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1370 GTGATGAGTTATCAGATCACGTCGTCATTGAGCATTCTCACGGTGGATCTGCTGCCGGAG 1429
Query 1439 CTCTCTTCCTTGCGGCATGTGGAGACGGCGGCCAACAAGAATCTGAAAGCCAGTGA 1494
||||||||||||| |||||||| ||||| | | ||||| ||||||||| |||||
Sbjct 1430 CTCTCTTCCTTGCCGCATGTGGCGACGGT--C-ATCAAGATTCTGAAAGCAAGTGA 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5