BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490836
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37800.1 | Symbols: XTH7 | xyloglucan endotransglucosylase/h... 1570 0.0
> AT4G37800.1 | Symbols: XTH7 | xyloglucan endotransglucosylase/hydrolase
7 | chr4:17775474-17777397 REVERSE LENGTH=1136
Length=1136
Score = 1570 bits (850), Expect = 0.0
Identities = 989/1053 (94%), Gaps = 22/1053 (2%)
Strand=Plus/Plus
Query 1 AACAAACTCATCATCATAAGCAACAATGGTGGTGTCACTCTTCTCTTCAAGAAATGTTTT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AACAAACTCATCATCATAAGCAACAATGGTGGTGTCACTCTTCTCTTCCAGAAATGTTTT 60
Query 61 CTTTTCGATT-AGCTTATGCTTATTTGCAGCATTGTACCAGCCGGTT-TCGAGTAGACCG 118
|| | || || ||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 61 CTATACG-TTAAGCTTATGCTTATTTGCAGCATTATACCAGCCGGTTAT-GAGTAGACCG 118
Query 119 GCTAAGTTTGAAGATGACTTTAGGATCACATGGTCCGATACTCATATCACTCAAATTGAT 178
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 GCTAAGTTTGAAGATGACTTTAGGATCGCATGGTCCGATACTCATATCACTCAAATTGAC 178
Query 179 GGAGGAAGAGCCATTCAGCTTAAATTGGACCCTAGCTCAGGATGTGGATTTGCTTCGAAG 238
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGAGGCAGAGCCATTCAGCTCAAATTGGACCCTAGCTCAGGATGTGGATTTGCTTCGAAG 238
Query 239 AAGCAATACTTGTTCGGCCGCGTGAGCATGAAAATCAAACTGATTCCCGGTGATTCGGCC 298
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 239 AAGCAATACTTGTTCGGCCGTGTGAGCATGAAAATCAAACTGATCCCCGGTGATTCTGCC 298
Query 299 GGAACTGTCGCTGCCTTCTACATGAATTCAGATACCAATTCTGTACGAGACGAGCTTGAT 358
|| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 299 GGGACTGTCACTGCCTTCTACATGAATTCAGATACCGATTCGGTACGAGACGAGCTTGAT 358
Query 359 TTCGAGTTCCTAGGAAATCGAAGTGGACAACCTTACACAGTACAAACCAATGTGTTTGCT 418
|| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 TTTGAGTTCTTAGGAAATCGAAGTGGACAACCTTACACAGTGCAAACCAATGTGTTTGCT 418
Query 419 CATGGTAAAGGCGATAGAGAGCAAAGAGTTAACCTTTGGTTCGACCCTTCTCATGATTTC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 CATGGTAAAGGCGATAGAGAGCAAAGAGTTAACCTTTGGTTCGACCCTTCTCGTGATTTC 478
Query 479 CACGAATACGCCATCTCATGGAACCATCTCCGTATCGTGTTCTACGTAGACAATGTGCCC 538
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 479 CACGAATATGCCATCTCATGGAACCATCTCCGTATTGTCTTCTACGTAGACAATGTGCCC 538
Query 539 ATTAGGGTTTACAAGAACAATGAGGCAAGGAAAGTACCATACCCAAGATTCCAACCAATG 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCAGGGTTTACAAGAACAATGAGGCAAGGAAAGTACCATACCCAAGATTCCAACCAATG 598
Query 599 GGTATATATTCCACGTTATGGGAAGCCGATGATTGGGCGACACGTGGAGGAATAGAGAAA 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGTGTATATTCCACGTTATGGGAAGCCGATGATTGGGCGACACGTGGAGGAATAGAGAAA 658
Query 659 ATCAATTGGTCGGGAGCGCCATTTTATGCTTACTACAAAGATTTTGATATAGAAGGATGT 718
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 ATCAATTGGTCGAGAGCGCCATTTTATGCTTATTACAAAGATTTTGATATAGAAGGATGT 718
Query 719 CCGGTTCCGGGA-CCGAC-GTATTGTCCTAG-TAATCCGAAGAATTGGTGGGAAGGAAGT 775
|||||||| ||| ||| | | ||||||| | |||| ||||||||||||||||||| |||
Sbjct 719 CCGGTTCCAGGACCCG-CAG-ATTGTCC-CGCTAATTCGAAGAATTGGTGGGAAGGCAGT 775
Query 776 GCGTACCACCAGTTGAGTCCGGTGGAAGCTCGAAGTTATAGATGGGTCCGAGTGAACCAT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GCGTACCACCAGTTGAGTCCGGTGGAAGCTCGAAGTTATAGATGGGTCCGAGTGAACCAT 835
Query 836 ATGGTCTACGATTATTGTACCGACAAATCTCGTTTTCCTGTTCCACCTCCAGAATGCTCG 895
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATGGTCTACGATTATTGCACTGACAAATCTCGTTTTCCTGTTCCACCTCCAGAATGCTCG 895
Query 896 GCTGGAATATGATCCAA-CATCATTGTCTTAAAAG---------TGCCAAGTGGTTCCGT 945
|||||||| |||||||| ||| ||||||||||||| ||| |||||||||| |
Sbjct 896 GCTGGAATCTGATCCAAACATTATTGTCTTAAAAGCAAAACAAGTGCGAAGTGGTTCCAT 955
Query 946 AAGAAAAGTTGCAATGTATGTGAAGTGATTAATGAGTCTTGTGGTATGTGG-GAAACTAT 1004
||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 956 AAGCAACGTTGCAATGTATGTGAAGTGATTAATGAGTCTTGTGGTATGTGGTGAAT-TGC 1014
Query 1005 TCATAATTGATCTGATTGTGGTCAAATGTTCAT 1037
||||||| |||||||||||||||||||||||||
Sbjct 1015 TCATAATCGATCTGATTGTGGTCAAATGTTCAT 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5