BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490837
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37790.1 | Symbols: HAT22 | Homeobox-leucine zipper protein ... 1498 0.0
AT2G22800.1 | Symbols: HAT9 | Homeobox-leucine zipper protein f... 449 2e-125
> AT4G37790.1 | Symbols: HAT22 | Homeobox-leucine zipper protein
family | chr4:17768042-17769606 FORWARD LENGTH=1370
Length=1370
Score = 1498 bits (811), Expect = 0.0
Identities = 928/982 (95%), Gaps = 18/982 (2%)
Strand=Plus/Plus
Query 1 TCTTGGTTTCATTTCGTCCCATAATCATCCAAACTTCACCAAAAGAAATTCTTAACAAAC 60
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 75 TCTTGGTTTCATTTCGTCCCATAATCTTCCAAACTTCACCAGAAGAAATTCTTAACAAAC 134
Query 61 tttttttCTTCATAGTATTACTTCTGAAGATCTTAAAGATT-TGATTAATACGAAGAGAA 119
||||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||||
Sbjct 135 -AATTTTCTTCATAATATTAATTCTCAAGATCTTAAAGATTAT-ATTAATACGAAGAGAA 192
Query 120 AATTCAAATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 AATTCAAATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTC 252
Query 180 ACCAACGCCTAATAATTACAATCATGCCATCAAGAAATCTTCCGCCACCGTAGACCACCG 239
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||
Sbjct 253 ACCAACGCCTAATAATTACAATCATGCCATCAAGAAATCTTCCTCCACTGTGGACCATCG 312
Query 240 TCTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTCTCTGGTGAGAGTTACAAGACCAA 299
| |||||||||||||||||||||||||||||||||| || |||||||| ||||||| |||
Sbjct 313 TTTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTATCCGGTGAGAGCTACAAGATCAA 372
Query 300 GACTGCTGCCGGCGCCGGGGACCAAATTTGCCGACAGACTTCGTCTCACAGCGGCATCTC 359
||||| |||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 373 GACTGGTGCCGGCGCCGGCGACCAAATTTGCCGGCAGACCTCGTCCCACAGCGGCATCTC 432
Query 360 ATCTTTCTCGAGCGGAAGGGTAaagagagaaagagaaatctacggcggcgacggagaaga 419
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 433 ATCTTTCTCGAGCGGAAGGGTAAAGAGAGAAAGAGAAATCTCCGGCGGCGATGGAGAAGA 492
Query 420 agaggcggaggagacgacggagagagTGGTGTGTTCGAGAGTGAGTGATGATCATGAAGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 493 AGAGGCGGAGGAGACGACGGAGAGAGTGGTGTGTTCGAGAGTGAGTGATGATCATGACGA 552
Query 480 TGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCTGTTCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 553 TGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCTCTTCT 612
Query 540 CGAAGATAGCTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAAATCTTGCGAG 599
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 613 CGAAGATAACTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAGCTCTTGCGAG 672
Query 600 ACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCTAGGAC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 673 ACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCTAGAAC 732
Query 660 AAAACTAAAGCAAACAGAAGTTGATTGTGAGTTTTTGAAGAAATGCTGTGAGACTTTAAC 719
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 733 AAAACTAAAGCAAACAGAAGTGGATTGTGAGTTTTTGAAGAAATGTTGCGAGACTTTAAC 792
Query 720 GGATGAGAATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAAATGTCTCA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 793 GGATGAGAATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAATTGTCTCA 852
Query 780 ACCTTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGTGAGAGACT 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ACCGTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGTGAGAGACT 912
Query 840 CGGCGGTGGTGGTGGAGGTGCCGGAGGAGTTGGCGGAGGTACGGCGGCGGTTGATGGAGA 899
|||||||||||||| | | ||||||| | |||| |||||||||||| |||
Sbjct 913 CGGCGGTGGTGGTG----T-C-GGAGGAG-------A--TACGACGGCGGTTGATGAAGA 957
Query 900 AACGGCGAAAGGAGCTTTCTCCATCGTCACAAAGCCTCGTTTCTATAACCCTTTCACTAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AACGGCGAAAGGAGCTTTCTCCATCGTCACAAAGCCTCGTTTCTATAACCCTTTCACTAA 1017
Query 960 TCCTTCTGCAGCATGTTAGTTA 981
||||||||||||||||||||||
Sbjct 1018 TCCTTCTGCAGCATGTTAGTTA 1039
Score = 279 bits (151), Expect = 3e-74
Identities = 163/169 (96%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 982 ttttttttttGTTTCTTGAATCAAATTAGGAATTAGTTAGACGATAAATCCCAGGGAAAA 1041
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1070 TTTTTTTTTTGTTTCTTAAATCAAATTAGGAATTAGTTAGAAGATAAATCCCAGGGAAAA 1129
Query 1042 AGTATTACGTTCAAATTGGGGGAAAATGGGGTATAGTCTTTATAGATAAGACTCTTCAAC 1101
| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1130 AATATTACGTTGAAATTGGGGGGAAATGGGGTATAGTCTTTATAGATAAGACTCTTCAAC 1189
Query 1102 GATTCCACTTTATTTTTCGGTGGGATTGTTGGTTGATGAAGCaaaaaaa 1150
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1190 GATTCCACTTTATTTTTCGGTGGGATTGTTGGTTGATGAAGAAAAAAAA 1238
> AT2G22800.1 | Symbols: HAT9 | Homeobox-leucine zipper protein
family | chr2:9704706-9706150 REVERSE LENGTH=1170
Length=1170
Score = 449 bits (243), Expect = 2e-125
Identities = 678/877 (77%), Gaps = 73/877 (8%)
Strand=Plus/Plus
Query 123 TCAAATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGG-CCTCTCAC 181
||| |||||| |||||||| ||||||||||||||||||||||||| ||||| || |||||
Sbjct 99 TCAGATGGGTTTTGATGATACATGCAACACAGGTCTTGTTCTTGGATTAGGTCC-CTCAC 157
Query 182 CAACGCCTAATAATTACAATCA-TGCCATCAAGAAATCTTCCGCCACCGTAGACCACCGT 240
||| || |||||||||||| | | ||||| || | || | || ||||
Sbjct 158 CAATTCCAAATAATTACAAT-AGTACCATC-AG--A--------CA----A-TCCTCCGT 200
Query 241 CTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTCTCTGGTGAGAGTTAC-AAG--ACC 297
| | || |||||| ||||||||||||||| ||||||| || | || | | | |||
Sbjct 201 -TTA-CAAGCTCGAGCCGTCGTTGACTCTATGCCTCTC-GG-GCGA-TCCCTCGGTTACC 255
Query 298 AAGACTGCTG-CCGGCGCCGGGGACCAAATTTGCCGACAGACTTCGTCTCACAGCGGCA- 355
| || || |||| | | ||||| | ||||| ||||| || ||||||||||| |
Sbjct 256 --G--TGGTGACCGGAG-C--TGACCAGCTATGCCGTCAGACGTCATCTCACAGCGG-AG 307
Query 356 TCTCATCTTTCTCGAGCGGAAGGGTAaagagagaaagagaaatctacggcggcgacggag 415
|||| |||||||| ||||| ||||| | || ||||||| | |||| ||||| |||
Sbjct 308 TCTCTTCTTTCTCAAGCGGGAGGGT--GGTGA-AAAGAGAGAGAGACGGTGGCGA-AGAG 363
Query 416 aag-aagaggcggaggagacgacggagagagTGGTGTGTTCGAGAGTGAGTGATGATCAT 474
| |||| ||| |||| |||||||||| || | | | ||||| | | | |||
Sbjct 364 TCGCCGGAGGAGGAAGAGATGACGGAGAGA---GT-T-AT--A-AGTGA-T--T-ACCAT 411
Query 475 GAAGATGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCT 534
||||||||||||||| |||||||| | ||||| ||||| || || |||||||||||||||
Sbjct 412 GAAGATGAAGAAGGTATTAGTGCTAGAAAAAAACTTAGGCTTACGAAACAACAATCTGCT 471
Query 535 GTTCTCGAAGATAGCTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAAATCTT 594
|||| || || |||||||| ||||||||||||||||||||| ||||| ||| |||
Sbjct 472 CTTCTTGAGGAAAGCTTCAAGGATCATAGCACCCTTAATCCCAAACAAAAGCAAGTTCTG 531
Query 595 GCGAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCT 654
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 532 GCTAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCC 591
Query 655 AGGACAAAACTAAAGCAAACAGAAGTTGATTGTGAGTTTTTGAAGAAATGCTGTGAGACT 714
|||||||| || |||||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 592 AGGACAAAGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACA 651
Query 715 TTAACGGATGAGAATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAAATG 774
||| | |||||||| | ||| ||||| |||||| ||||||| || || | ||||| ||
Sbjct 652 TTAGCAGATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTG 711
Query 775 TCTCAACCTTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGTGAG 834
|||| || ||||||||||||||||| || ||||| | || | ||| ||||||||||||
Sbjct 712 ACTCAGCCCTTTTACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAG 771
Query 835 AGACTCGGCGGTGGTGGTGGAGGT---GCCGGAGGAGTTGGCGG-AG-G----TACGGCG 885
||| ||||||| || || || ||| | ||||||| |||||| || | ||| |||
Sbjct 772 AGAATCGGCGGCGGCGGCGGGGGTAATGGAGGAGGAGGTGGCGGCAGCGGGGCTACCGCG 831
Query 886 GCGGTTG-A--TGGA-GAAACGGCGAAAGGAGCTTTCTCCATCGTCA-CAAAGCCTCGTT 940
| | ||| | |||| | | |||| |||||||||||||| ||| || ||||||||| |
Sbjct 832 GTGATTGTAGATGGAAGTA-CGGCCAAAGGAGCTTTCTCTATC-TCCTCAAAGCCTCACT 889
Query 941 TCTAT-AACCCTTTCACTAATCCTTCTGCAGCATGTT 976
||| | |||||||| ||||| || |||||||| ||||
Sbjct 890 TCT-TCAACCCTTTTACTAACCCATCTGCAGCTTGTT 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56425412580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5