BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490838 Length=1109 Score E Sequences producing significant alignments: (Bits) Value AT4G37780.1 | Symbols: MYB87, ATMYB87 | myb domain protein 87 |... 1507 0.0 > AT4G37780.1 | Symbols: MYB87, ATMYB87 | myb domain protein 87 | chr4:17758243-17759557 REVERSE LENGTH=1110 Length=1110 Score = 1507 bits (816), Expect = 0.0 Identities = 1028/1124 (91%), Gaps = 40/1124 (4%) Strand=Plus/Plus Query 3 aaaaaaaaagaataa-aacaaaaaTGGGAAGAGCACCGTGCTGCGACAAGACAGCGGTGA 61 ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| Sbjct 10 AAAAAAAAAGAATAAGAA-GAAAATGGGAAGAGCACCGTGCTGCGACAAGATGGCGGTGA 68 Query 62 AGAAAGGGCCATGGTCGACGGAGGAAGACGCGGTGCTTAAGTCTTACATCGAAAAACACG 121 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 69 AGAAAGGGCCATGGTCGACGGAGGAAGATGCCGTGCTTAAGTCTTACATCGAAAAACACG 128 Query 122 GCACCGGCAACAACTGGATTTCCCTCCCTCAGAGAATTGGGATTAAGAGATGCGGGAAAA 181 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 129 GCACCGGCAACAACTGGATTTCCCTCCCTCAGAGAATTGGGATAAAGAGGTGCGGGAAGA 188 Query 182 GTTGTCGTTTGAGATGGCTTAATTACTTGAGGCCTAACTTAAAGCATGGAGGCTTCACCG 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 GTTGTCGTTTGAGATGGCTTAATTACTTGAGGCCTAACTTAAAGCATGGAGGCTTCACCG 248 Query 242 ATGAAGAAGACTACATCATTTGCAGCCTTTACATTACTATTGGAAGCAGGTGGTCTATTA 301 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 249 ATGAAGAAGATTACATCATTTGCAGCCTTTACATTACTATTGGAAGCAGGTGGTCTATCA 308 Query 302 TTGCTTCACAATTACCGGGAAGAACAGATAACGACATCAAAAACTATTGGAACACTAGGC 361 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 309 TTGCTTCACAATTACCGGGAAGAACAGACAACGACATCAAAAACTATTGGAACACGAGGC 368 Query 362 TGAAGAAGAAGCTATTGAGCAAGCAAGGGAAGGCATTTCATCAACAACTTAATGTCAAAT 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 TGAAGAAGAAGCTATTGAGCAAGCAAGGGAAGGCATTTCATCAACAACTTAATGTCAAAT 428 Query 422 TCGAGCGTGGAACAACATCATCATCATCGAGTCAGA------TCCAAATGTTTCATGATG 475 | |||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 429 TTGAGCGTGGAACAACATCATCATCATCGAGTCAGAACCAGATCCAAATCTTTCATGATG 488 Query 476 AGAATACCAAATCAAACCAAACATTATACAATCAAGTGGTGGATCCATCAACAACATCCT 535 |||| |||||||| |||||||||||||| |||||||||||||||||||||| | | | | Sbjct 489 AGAACACCAAATCGAACCAAACATTATATAATCAAGTGGTGGATCCATCAATGAGAGCTT 548 Query 536 TTGCCATGGAAGAACAAAGCATGATCAAGAATCCGATATTGGAACCCTTTTATTGGGAAC 595 ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| Sbjct 549 TTGCCATGGAAGAACAAAGCATGATCAAGAATCAGATATTGGAACCATTTTCTTGGGAAC 608 Query 596 CAAACAATGTTTTGTTTGATAATGATCATGATGCAGCTGCTTCGTCTTACcatcatcatc 655 ||||||| |||||||||||| |||| |||||||||||||||| ||||| |||||||| Sbjct 609 CAAACAAGGTTTTGTTTGATGTTGATTATGATGCAGCTGCTTCATCTTA---TCATCATC 665 Query 656 atcatcattcatccccatcatTGAACTCCATGAGCAGTAGTAGTAGTATTGGTACTAAT- 714 || ||| | ||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 666 ATG--CAT-C--CCC-ATCATTGAACTCCATGAGCAGTACTAGTAGTATTGGTACTAATA 719 Query 715 -T-CATCTCTACAAATGTCTCACTACACC-TCTAATCACAATGATCATGGTGATCAACAA 771 | ||||| |||||||||||||||||||| || |||||||||||||||| |||||| | Sbjct 720 ATTCATCTTTACAAATGTCTCACTACACCGTC-AATCACAATGATCATG---ATCAACCA 775 Query 772 GATATGTTCTTTATGGCCGGTTTTGAGAATTTCCAGGCCGAGCTGTTTGATGAGATAGCG 831 |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| Sbjct 776 GATATGTTCTTTATGGACGGGTTTGAGAATTTCCAGGCCGAGCTATTTGATGAGATAGCC 835 Query 832 AACAACAACACGGAAGAAA-TCGGGTTTCATGGAACCGAAATGCC--A--AACAACAACT 886 ||||||||||||| ||||| | || ||| | |||||||| || || | || ||||||| Sbjct 836 AACAACAACACGGTAGAAAAT-GGCTTTGACGGAACCGAGAT-CCTGATCAATAACAACT 893 Query 887 ACTTGGATCACGATATTAGCTCCTTCATTGATTATCCTCTATACGATAATGAGTAGATGA 946 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 ACTTGGATCACGATATTAGCTCCTTCATTGATTATCCTCTATACGATAATGAGTAGATGA 953 Query 947 TGAATTAATTAGATCTTTATTTGATACAGATATGATATGCCAATGTACTTAGGTTAAATC 1006 || |||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||| Sbjct 954 TGGATTAATTAGATCATTAATAGATACAGATATTATATGCCAATGTACTTAGGTTAAATC 1013 Query 1007 ACGtttttttgtgtgtgtgtgtTATCTCTTAAAATGTTGAAGGCGTGAAAGAACCAAAA- 1065 | ||||||| || | ||| || |||||||||||||||||||||||||||||| |||| Sbjct 1014 ATGTTTTTT-GT-T-TGTCTG--ATCTCTTAAAATGTTGAAGGCGTGAAAGAAG-AAAAG 1067 Query 1066 CCCTAGAAGTGTATTACACAATTTTTGTTTGCTTTTTGCAATAT 1109 ||||||||||||||||||||| || |||||| |||||||||| Sbjct 1068 CCCTAGAAGTGTATTACACAAAGATT-TTTGCTCTTTGCAATAT 1110 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54367190235 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5