BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490838
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37780.1 | Symbols: MYB87, ATMYB87 | myb domain protein 87 |... 1507 0.0
> AT4G37780.1 | Symbols: MYB87, ATMYB87 | myb domain protein 87
| chr4:17758243-17759557 REVERSE LENGTH=1110
Length=1110
Score = 1507 bits (816), Expect = 0.0
Identities = 1028/1124 (91%), Gaps = 40/1124 (4%)
Strand=Plus/Plus
Query 3 aaaaaaaaagaataa-aacaaaaaTGGGAAGAGCACCGTGCTGCGACAAGACAGCGGTGA 61
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 10 AAAAAAAAAGAATAAGAA-GAAAATGGGAAGAGCACCGTGCTGCGACAAGATGGCGGTGA 68
Query 62 AGAAAGGGCCATGGTCGACGGAGGAAGACGCGGTGCTTAAGTCTTACATCGAAAAACACG 121
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 69 AGAAAGGGCCATGGTCGACGGAGGAAGATGCCGTGCTTAAGTCTTACATCGAAAAACACG 128
Query 122 GCACCGGCAACAACTGGATTTCCCTCCCTCAGAGAATTGGGATTAAGAGATGCGGGAAAA 181
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 129 GCACCGGCAACAACTGGATTTCCCTCCCTCAGAGAATTGGGATAAAGAGGTGCGGGAAGA 188
Query 182 GTTGTCGTTTGAGATGGCTTAATTACTTGAGGCCTAACTTAAAGCATGGAGGCTTCACCG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GTTGTCGTTTGAGATGGCTTAATTACTTGAGGCCTAACTTAAAGCATGGAGGCTTCACCG 248
Query 242 ATGAAGAAGACTACATCATTTGCAGCCTTTACATTACTATTGGAAGCAGGTGGTCTATTA 301
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 249 ATGAAGAAGATTACATCATTTGCAGCCTTTACATTACTATTGGAAGCAGGTGGTCTATCA 308
Query 302 TTGCTTCACAATTACCGGGAAGAACAGATAACGACATCAAAAACTATTGGAACACTAGGC 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 309 TTGCTTCACAATTACCGGGAAGAACAGACAACGACATCAAAAACTATTGGAACACGAGGC 368
Query 362 TGAAGAAGAAGCTATTGAGCAAGCAAGGGAAGGCATTTCATCAACAACTTAATGTCAAAT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TGAAGAAGAAGCTATTGAGCAAGCAAGGGAAGGCATTTCATCAACAACTTAATGTCAAAT 428
Query 422 TCGAGCGTGGAACAACATCATCATCATCGAGTCAGA------TCCAAATGTTTCATGATG 475
| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 429 TTGAGCGTGGAACAACATCATCATCATCGAGTCAGAACCAGATCCAAATCTTTCATGATG 488
Query 476 AGAATACCAAATCAAACCAAACATTATACAATCAAGTGGTGGATCCATCAACAACATCCT 535
|||| |||||||| |||||||||||||| |||||||||||||||||||||| | | | |
Sbjct 489 AGAACACCAAATCGAACCAAACATTATATAATCAAGTGGTGGATCCATCAATGAGAGCTT 548
Query 536 TTGCCATGGAAGAACAAAGCATGATCAAGAATCCGATATTGGAACCCTTTTATTGGGAAC 595
||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 549 TTGCCATGGAAGAACAAAGCATGATCAAGAATCAGATATTGGAACCATTTTCTTGGGAAC 608
Query 596 CAAACAATGTTTTGTTTGATAATGATCATGATGCAGCTGCTTCGTCTTACcatcatcatc 655
||||||| |||||||||||| |||| |||||||||||||||| ||||| ||||||||
Sbjct 609 CAAACAAGGTTTTGTTTGATGTTGATTATGATGCAGCTGCTTCATCTTA---TCATCATC 665
Query 656 atcatcattcatccccatcatTGAACTCCATGAGCAGTAGTAGTAGTATTGGTACTAAT- 714
|| ||| | ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 666 ATG--CAT-C--CCC-ATCATTGAACTCCATGAGCAGTACTAGTAGTATTGGTACTAATA 719
Query 715 -T-CATCTCTACAAATGTCTCACTACACC-TCTAATCACAATGATCATGGTGATCAACAA 771
| ||||| |||||||||||||||||||| || |||||||||||||||| |||||| |
Sbjct 720 ATTCATCTTTACAAATGTCTCACTACACCGTC-AATCACAATGATCATG---ATCAACCA 775
Query 772 GATATGTTCTTTATGGCCGGTTTTGAGAATTTCCAGGCCGAGCTGTTTGATGAGATAGCG 831
|||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 776 GATATGTTCTTTATGGACGGGTTTGAGAATTTCCAGGCCGAGCTATTTGATGAGATAGCC 835
Query 832 AACAACAACACGGAAGAAA-TCGGGTTTCATGGAACCGAAATGCC--A--AACAACAACT 886
||||||||||||| ||||| | || ||| | |||||||| || || | || |||||||
Sbjct 836 AACAACAACACGGTAGAAAAT-GGCTTTGACGGAACCGAGAT-CCTGATCAATAACAACT 893
Query 887 ACTTGGATCACGATATTAGCTCCTTCATTGATTATCCTCTATACGATAATGAGTAGATGA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ACTTGGATCACGATATTAGCTCCTTCATTGATTATCCTCTATACGATAATGAGTAGATGA 953
Query 947 TGAATTAATTAGATCTTTATTTGATACAGATATGATATGCCAATGTACTTAGGTTAAATC 1006
|| |||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 954 TGGATTAATTAGATCATTAATAGATACAGATATTATATGCCAATGTACTTAGGTTAAATC 1013
Query 1007 ACGtttttttgtgtgtgtgtgtTATCTCTTAAAATGTTGAAGGCGTGAAAGAACCAAAA- 1065
| ||||||| || | ||| || |||||||||||||||||||||||||||||| ||||
Sbjct 1014 ATGTTTTTT-GT-T-TGTCTG--ATCTCTTAAAATGTTGAAGGCGTGAAAGAAG-AAAAG 1067
Query 1066 CCCTAGAAGTGTATTACACAATTTTTGTTTGCTTTTTGCAATAT 1109
||||||||||||||||||||| || |||||| ||||||||||
Sbjct 1068 CCCTAGAAGTGTATTACACAAAGATT-TTTGCTCTTTGCAATAT 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5