BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490839
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37770.1 | Symbols: ACS8 | 1-amino-cyclopropane-1-carboxylat... 2617 0.0
> AT4G37770.1 | Symbols: ACS8 | 1-amino-cyclopropane-1-carboxylate
synthase 8 | chr4:17752084-17754157 FORWARD LENGTH=1780
Length=1780
Score = 2617 bits (1417), Expect = 0.0
Identities = 1662/1772 (94%), Gaps = 49/1772 (3%)
Strand=Plus/Plus
Query 1 GATCGTAGCTTACCTACAAACATCACTCACAATCCAATCAAAAC--AACACCTTTTATTC 58
|||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 1 GATCGTAGCTTACCTACAAACAACACTCACAATCCAATCAAAACAAAACACTTTTTATTC 60
Query 59 TCTCTCAAAA---TC---T-T-CTTTA-T-T-CT-C-C-T--A-CTC-G-CTCTCTATCT 99
|||||||||| || | | ||||| | | || | | | | ||| | ||||||||||
Sbjct 61 TCTCTCAAAATCTTCATATCTACTTTATTCTCCTACTCATCCATCTCTGTCTCTCTATCT 120
Query 100 CTAGAGCT-A--AAGAAAATGGGTCTCTTGTCAAAGAAAGCTACTTGCAACACTCATGGC 156
|||||||| | ||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 121 CTAGAGCTAATTAAGAAAATGGGTCTCTTGTCAAAGAAAGCTAGTTGCAACACGCACGGC 180
Query 157 CAAGATTCTTCGTATTTTTTGGGTTGGGAAGAGTATGAGAAAAATCCTTACGACGAGATC 216
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CAAGATTCTTCGTATTTTTGGGGTTGGGAAGAGTATGAAAAAAATCCTTACGACGAGATC 240
Query 217 AAAAACCCAGACGGCATTATCCAAATGGGTCTAGCAGAAAATCAGTTATCTTTCGATCTC 276
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 AAGAACCCAGACGGCATTATCCAAATGGGTCTAGCAGAAAATCAGTTGTCTTTCGATCTC 300
Query 277 ATTGAGTCATGGCTTGCTAAGAACCCTGACGCAGCAAATTTCAAAAGGGAAGGCCAATCT 336
|||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||
Sbjct 301 ATTGAGTCATGGCTTGCTAAGAACCCCGACGCAGCCAATTTCCAAAGAGAAGGCCAATCC 360
Query 337 ATATTTCGAGAATTAGCTCTCTTTCAAGATTATCATGGCCTTCCTTCCTTCAAGAATGCT 396
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATATTTCGGGAATTAGCTCTCTTTCAAGATTATCATGGCCTTCCTTCCTTCAAGAATGCT 420
Query 397 ATGGCAGATTTCATGTCGGAAAATAGAGGAAACCGAGTTTCTTTCAATCCGAACAAGCTT 456
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 421 ATGGCGGATTTCATGTCGGAAAATAGAGGAAATCGAGTTTCTTTCAATCCAAACAAGCTT 480
Query 457 GTCCTCACCGCTGGTGCTACTTCAGCTAACGAAACTCTCATGTTCTGTCTCGCTGATCGT 516
||||||||||||||||||||| | |||||||| ||||||||||| ||||||||||||| |
Sbjct 481 GTCCTCACCGCTGGTGCTACTCCGGCTAACGAGACTCTCATGTTTTGTCTCGCTGATCCT 540
Query 517 GGAGATGCTTTCTTGCTCCCTACGCCATATTATCCAGGATTTGATAGGGATTTGAAATGG 576
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GGAGATGCTTTCTTGCTCCCTACGCCGTATTATCCAGGATTTGATAGGGATTTGAAATGG 600
Query 577 AGAACCGGAGCTGAGATTGTACCGATCCAGTGTACGAGTGCAAACGGATTCCGCATCACA 636
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 601 AGAACCGGAGCTGAGATTGTACCGATCCAGTGTAAGAGTGCAAACGGTTTCCGCATCACA 660
Query 637 AAA-TCAGCACTTGAAGAAGCCTACGAGCAAGCTCAAAAGCTTAACCTAAAAGTTAAAGG 695
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAAGT-AGCACTTGAAGAAGCCTACGAGCAAGCTCAAAAGCTTAACCTAAAAGTTAAAGG 719
Query 696 AGTCCTTATAACCAACCCATCTAACCCGTTGGGTACTACAACGACACGAACTGAACTAAA 755
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 720 AGTCCTTATAACCAACCCATCTAACCCGTTGGGCACTACAACGACACGAACCGAACTAAA 779
Query 756 CCATCTCTTGGACTTCATCTCACGTAAGAAGATACATTTGATAAGCGATGAGATCTACTC 815
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 780 CCATCTCTTGGACTTCATCTCACGTAAGAAGATACATTTGATAAGCGACGAGATCTATTC 839
Query 816 GGGTACCGTTTTCACCTCTCCCGGATTCATTAGCGTAATGGAAGTCCTCAAAGACCGAAA 875
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 GGGTACCGTTTTCACCAATCCCGGATTCATTAGCGTAATGGAAGTCCTCAAAGACAGAAA 899
Query 876 GCTCGAAAACACCGATGTTTTCGACCGTGTCCACATCGTTTACAGTTTGTCTAAAGATCT 935
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GCTCGAAAACACCGATGTTTTCGACCGTGTCCACATTGTTTACAGTTTGTCTAAAGATCT 959
Query 936 AGGCCTACCTGGTTTTCGCGTTGGAGCGATTTACTCCAACGATGATTTTGTTGTCTCCGC 995
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 960 AGGCCTACCTGGTTTTCGCGTTGGGGTGATTTACTCCAACGATGATTTTGTTGTCTCCGC 1019
Query 996 AGCGACAAAAATGTCCAGTTTCGGTCTAATCTCTTCTCAAACACAATACCTCTTGTCCAC 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 AGCGACAAAAATGTCCAGTTTCGGTCTAATCTCTTCTCAAACACAATACCTCTTGTCCGC 1079
Query 1056 ATTGCTATCCGACAAGAACTTCACTAAAAACTACCTCGAAGAGAACCAAATCCGGCTCAA 1115
|||| |||| ||||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1080 ATTGTTATCAGACAAGACCTTCACCAAAAACTACCTCGAAGAAAACCAAATCCGGCTCAA 1139
Query 1116 GAACAGATACAAGAAGCTCGTCTCGGGTCTAGAGGCTGCAGGCATCGAGTGTCTCAAGAG 1175
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAACAGACACAAGAAGCTCGTCTCGGGTCTAGAGGCTGCAGGCATCGAGTGTCTCAAGAG 1199
Query 1176 CAACGCCGGACTCTTCTGTTGGGTTGACATGAGACACTTATTAAAATCAAACACGTTCGA 1235
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 CAACGCCGGACTCTTCTGTTGGGTTGACATGAGACACCTATTAAAATCAAACACGTTCGA 1259
Query 1236 AGCCGAGATTGAGCTATGGAAAAAGATCGTTTACGAGGTTAAACTCAATATCTCTCCCGG 1295
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1260 AGCCGAGATTGAGCTATGGAAAAAGATCGTTTACGAGGTTAAGCTCAATATCTCTCCCGG 1319
Query 1296 TTCTTCGTGCCATTGCAACGAACCGGGTTGGTTTAGGGTTTGTTTTGCGAATATGAGCGA 1355
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1320 TTCTTCGTGCCATTGCAACGAACCGGGTTGGTTTAGGGTTTGTTTTGCGAATTTGAGCGA 1379
Query 1356 AGAGACATTAAAGGTAGCGTTGGATAGATTGAAGGGGTTCGTTGATGGACCGTCGTCTAC 1415
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1380 AGAGACATTAAAGGTAGCGTTGGATAGATTGAAGAGGTTCGTTGATGGACCGTCGCCTAC 1439
Query 1416 TAGAAGAAGTCAAATTGAACATCAAAGACTAAAGAATTTAAGGAAGATGAAAGTCTCTAA 1475
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1440 TAGAAGAAGTCAAAGTGAACATCAAAGACTAAAGAATCTAAGGAAGATGAAAGTCTCTAA 1499
Query 1476 TTGGGTTTTCCGGCTATCGTTTCACGACCGTGAACCCGAGGAACGATAGTCTGGtttttt 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1500 TTGGGTTTTCCGGCTATCGTTTCACGACCGTGAACCCGAGGAACGATAGTCTG-TTTTTA 1558
Query 1536 tATAAA-GTTAAAAGTGTAATAAGt-t-tttttt-GGTCATTATTTA----TGA--GT-G 1584
| ||| |||||| ||||||||||| | |||||| |||||||||||| ||| || |
Sbjct 1559 AAAAAAAGTTAAA-GTGTAATAAGTATGTTTTTTTGGTCATTATTTACAAGTGATTGTTG 1617
Query 1585 ---AT-TGt-t-ttttttttAATATCAGCTTTTGATATTTTGGTATAGTTTTT---AGGA 1635
| ||| | |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1618 GGCAAATGTATATTTTTTTTAATATCAGAATTTGATATTTTGGTATAGTTTTTTTTAGGG 1677
Query 1636 AGAAAGTTCACTCATTCCGTACGTGAAAATGGATAATGCAGTGTGGCTTTTCTTATGTAT 1695
||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 1678 AGAAAGTTCACTCATTCCGTAAGTGTAAC-GGATAATGCAGTGTGGCTTTTCTTATGTAT 1736
Query 1696 AATTTACTGTCACTTTCTAATGATATTTCAAA 1727
|||||||||||||||||||||||||||| |||
Sbjct 1737 AATTTACTGTCACTTTCTAATGATATTTAAAA 1768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85391127045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5