BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490840
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 | chr4:17743... 2423 0.0
AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 | chr2:97236... 987 0.0
> AT4G37760.1 | Symbols: SQE3 | squalene epoxidase 3 | chr4:17743887-17746678
FORWARD LENGTH=2028
Length=2028
Score = 2423 bits (1312), Expect = 0.0
Identities = 1487/1574 (94%), Gaps = 2/1574 (0%)
Strand=Plus/Plus
Query 85 CTCTCTGTGTACGTTAATGGCTCCGAGGAT-TGTCGTTGATCACTTTATCCTCACAACAA 143
||||||||||||| |||||||||||| ||| | |||||||||||| ||||||||||||||
Sbjct 183 CTCTCTGTGTACGCTAATGGCTCCGACGATAT-TCGTTGATCACTGTATCCTCACAACAA 241
Query 144 CGTTTTTCGCCTCCTTGTTCGCGTTTCTGCTTCTATACATCTTGCGTCGTCGGAGCAAGA 203
||||| |||| ||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 242 CGTTTGTCGCATCCTTGTTCGCGTTTCTGCTTCTATACGTCCTGCGTCGCCGGAGCAAGA 301
Query 204 AGATTCGTGGGTCTGTCAATGTCCGTAACGGAACCCTAACGGTGAAATCCGGAACAGGTG 263
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 302 CGATTCATGGGTCTGTCAATGTCCGTAACGGAACCCTAACGGTGAAATCTGGAACAGACG 361
Query 264 TCGATATCATCATCGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTAGGAA 323
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 362 TTGATATTATCATTGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTCGGCA 421
Query 324 AGGAAGGGAGAAGAGTTCACGTTATAGAAAGAGACTTAACTGAGCCTGACCGAATCGTCG 383
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 422 AGGAAGGAAGAAGAGTTCACGTTATAGAAAGAGACTTAACGGAGCCTGATCGAATTGTCG 481
Query 384 GTGAATTGCTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTG 443
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GTGAATTACTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTG 541
Query 444 TGAAGGAGATAGATGCGCAGAGAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACA 503
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGAAGGATATAGATGCGCAGAGAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACA 601
Query 504 CTAAACTGTCTTACCCGTTGGATCAGTTTGATTCCGATGTTGCGGGTCGTAGCTTTCACA 563
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CTAAACTCTCTTACCCGTTGGATCAGTTTGATTCCGATGTTGCGGGTCGTAGCTTTCACA 661
Query 564 ATGGGAGATTTGTGCAGCGGATGCGAGAGAAAGCTTCTTCACTTCCCAATGTTCGAATGG 623
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 662 ATGGGAGATTTGTGCAGAGGATGCGAGAGAAAGCTTCTTTACTTCCCAATGTTCGAATGG 721
Query 624 AGCAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAATACA 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGCAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAATACA 781
Query 684 AAACCAAAGATGGCCAAGAACTTAAATCATTTGCTCCTCTCACTATTGTATGTGATGGTT 743
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 782 AAACCAAAGATGGCCAAGAGCTTAAGTCATTTGCTCCTCTCACTATTGTATGTGATGGTT 841
Query 744 GTTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAGGTGCCATCCAATTTCG 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GTTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAGGTGCCATCCAATTTCG 901
Query 804 TGGGTCTGGTGTTGGAGAATTGCGAACTCCCATTTCCGAACCACGGACATGTTGTTCTCG 863
| |||||||| |||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 902 TTGGTCTGGTATTGGAGAATTGCGAACTCCCGTTTCCGAACCACGGGCACGTTGTTCTTG 961
Query 864 GCGACCCATCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTTGCTTGGTTG 923
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 962 GCGATCCGTCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTTGCTTGGTAG 1021
Query 924 ATGTTCCAGGTTCAAAACTTCCTTCAGTCGCAAGCGGCGAAATGGCTCACCATCTCAAAA 983
|||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1022 ATGTACCAGGTTCAAAACTTCCTTCAGTTGCAAGTGGTGAAATGGCTCACCATCTCAAAA 1081
Query 984 CAACAGTCGCACCCCAGGTACCGCCTCAAATCCGCGATTCGTTCATTTCTGCGGTCGAAA 1043
||| || ||||| |||||||| ||||| ||||| ||| | ||||||||||| |||||||
Sbjct 1082 CAATGGTTGCACCGCAGGTACCACCTCAGATCCGTGATGCTTTCATTTCTGCAGTCGAAA 1141
Query 1044 AAGGTAACATAAGAACAATGCCTAACCGAAGCATGCCAGCCGACCCAATTCATACACCCG 1103
|||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||| |
Sbjct 1142 AAGGTAACATAAGAACAATGCCGAACAGAAGCATGCCAGCTGATCCAATTCATACACCTG 1201
Query 1104 GAGCTCTGCTTTTAGGCGACGCATTCAACATGCGCCATCCTCTTACCGGAGGCGGTATGA 1163
||||| |||||||||| || || ||||||||||||||||||||||| ||||| |||||||
Sbjct 1202 GAGCTTTGCTTTTAGGTGATGCGTTCAACATGCGCCATCCTCTTACTGGAGGTGGTATGA 1261
Query 1164 CCGTCGCATTGTCTGATATAGTCATCCTCCGCGATCTATTAAACCCGCTCGTCGACTTAA 1223
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1262 CCGTTGCATTGTCTGATATAGTCATCCTCCGTGATCTATTGAACCCGCTCGTCGACTTAA 1321
Query 1224 CCAACAAAGAGTCCTTATCCAAATACATCGAATCGTTCTACACGTTGCGAAAACCGGTTG 1283
|||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 1322 CCAACAAAGAGTCCTTATCCAAATACATAGAATCATTCTACACATTGCGGAAACCGGTTG 1381
Query 1284 CTTCGACTATCAATACGCTCGCAGGAGCTCTTTACAAAGTCTTTTTGGCTTCTCCAGACG 1343
|||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1382 CTTCGACTATCAATACACTCGCAGGCGCTCTTTACAAAGTCTTTTTAGCATCTCCAGACG 1441
Query 1344 ATGCGAGAAGCGAAATGCGTCGAGCTTGCTTCGATTATCTTAGCCTCGGAGGGGTTTGCT 1403
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 ATGCAAGAAGCGAAATGCGTCGAGCTTGCTTCGATTATCTTAGCCTCGGAGGGGTTTGCT 1501
Query 1404 CCTCAGGACCAGTGGCTTTGCTCTCAGGTTTGAACCCGCGACCTATGAGCCTTGTTCTTC 1463
| |||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1502 CATCAGGACCTGTGGCTTTGCTATCTGGTTTGAACCCACGACCTATGAGCCTTGTTCTTC 1561
Query 1464 ATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGTTTGCTTGTACCTCTCCCTTCCGTCA 1523
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1562 ATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGTTTGCTTGTACCTCTCCCGTCCGTTA 1621
Query 1524 AACGGTTATGGCTCGGAGCGAGACTAATCTCGAGTGCTTCAGGGATAATATTTCCAATAA 1583
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1622 AACGGTTATGGCTTGGAGCTAGACTAATCTCGAGTGCTTCAGGGATCATATTTCCAATAA 1681
Query 1584 TAAAAGCAGAAGGTGTGAGGCAAATGTTCTTCCCTCGAACTATTCCTGCCATTTACAGAG 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TAAAAGCAGAAGGTGTGAGGCAAATGTTCTTCCCTCGAACTATTCCTGCCATTTACAGAG 1741
Query 1644 CTCCTCCTACTCCT 1657
||||||||||||||
Sbjct 1742 CTCCTCCTACTCCT 1755
Score = 134 bits (72), Expect = 4e-30
Identities = 79/82 (96%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 1695 GTGGTTTGATTTGGTCTTTACGAACTTTGGTTTGAAATTTGTACTCA-TCCATTACAAAC 1753
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1856 GTGGTTTGATTTGGTTTTTACGAACTTTGGTTTGAAATTTGTACTCAGTCCATTACAGAC 1915
Query 1754 AAAATCATCAAGTAAATAAGTA 1775
||||||||||||||||||||||
Sbjct 1916 AAAATCATCAAGTAAATAAGTA 1937
> AT2G22830.1 | Symbols: SQE2 | squalene epoxidase 2 | chr2:9723680-9726270
REVERSE LENGTH=2025
Length=2025
Score = 987 bits (534), Expect = 0.0
Identities = 1125/1407 (80%), Gaps = 54/1407 (4%)
Strand=Plus/Plus
Query 272 ATCATCGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTAGGAAAGGAAGGG 331
||||||||||| |||||||||||||| | || ||||||||||| || || ||||||||
Sbjct 376 ATCATCGTCGGAGCTGGTGTCGCCGGTTCCGCTCTTGCTCATACTCTCGGCAAGGAAGGA 435
Query 332 AGAAGAGTTCACGTTATAGAAAGAGACTTAACTGAGCCTGACCGAATCGTCGGTGAATTG 391
|||||||| ||||||||||||||||| || |||||| ||| ||||||| |||||||||
Sbjct 436 AGAAGAGTGCACGTTATAGAAAGAGATTTTTCTGAGCAAGACAGAATCGTTGGTGAATTG 495
Query 392 CTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTGTGAAGGAG 451
||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||||| ||
Sbjct 496 CTTCAACCTGGTGGTTATTTGAAGTTAATAGAACTTGGACTTGAAGATTGTGTGAAGAAG 555
Query 452 ATAGATGCGCAGA-GAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACACTAAAC- 509
|| ||||| || | ||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 556 ATTGATGCTCA-ACGAGTTCTTGGTTATGTTCTCTTTAAAGATGGGAAGCATACTAAACT 614
Query 510 TGTCTTACCCGTTGG-ATCAGTTTGATTCCGATGTTG-CGGGTCGTAGCTTT-CACAATG 566
|| ||||||| |||| | | ||||||||| ||||| | |||| | || ||| || ||||
Sbjct 615 TG-CTTACCCCTTGGAAAC-GTTTGATTCGGATGTAGCCGGG-AGAAG-TTTCCATAATG 670
Query 567 GGAGATTTGTGCAGCGGATGCGAGAGAAAGCTTCTT-CACTTCCCAATGTTCGAATGGAG 625
|||||||||| ||| | |||||||| ||||| ||| | ||| | ||||| ||| ||||
Sbjct 671 GGAGATTTGTACAGAGAATGCGAGAAAAAGC-CCTTACTCTTTCAAATGTACGATTGGAA 729
Query 626 CAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAATACAAA 685
|||||||| || || |||||| | |||||| |||| | ||| ||||| |||| ||||| |
Sbjct 730 CAAGGAACGGTTACGTCGTTGCTTGAAGAACACGGGACAATTAAAGGGGTTCGATACAGA 789
Query 686 ACCAAAGATGGCCAA-GAACTTAAATCATTTGCTCCTCTCACTATTGTATGTGATGGTTG 744
|| ||||| || ||| || ||| |||||||||||||||||| |||||||||||||||||
Sbjct 790 ACAAAAGA-GGGCAATGAGTTTAGATCATTTGCTCCTCTCACAATTGTATGTGATGGTTG 848
Query 745 TTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAGGTGCCATCCAATTTCGT 804
|||||||||||||||||| ||||| ||||||||||||||||| |||||||| | ||| ||
Sbjct 849 TTTCTCCAACTTGCGTCGCTCTCTTTGCAAACCTAAGGTGGATGTGCCATCTACTTTTGT 908
Query 805 GGGTCTGGTGTTGGAGAATTGCGAACTCCCATTTCCGAACCACGGACATGTTGTTCTCGG 864
|||||| || |||||||| || ||||| |||||| | || ||||| || |||||||||||
Sbjct 909 GGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAAATCACGGGCACGTTGTTCTCGG 968
Query 865 CGACCCATCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTTGCTTGGTTGA 924
|||||||||||||| ||| | ||||| |||||||| || |||||||||||||| || ||
Sbjct 969 TGACCCATCACCCATCTTAATGTATCCCATCAGCAGTTCTGAAGTCCGTTGCTTAGTAGA 1028
Query 925 TGTTCCAGGTTCAAAA-CTTCCTTC-AGTCGCAAGCGGCGAAATGGCTCACCATCTCAAA 982
||| || ||| ||||| |||||| | | | |||| || |||||||| | |||| |||
Sbjct 1029 TGTACCGGGT-CAAAAACTTCCTCCCATT-GCAAATGGTGAAATGGCAAAGTATCTGAAA 1086
Query 983 ACAACAG-TCGCACCCCAGGTACCGCCTCAAA-TCCGCGATTCGTTCATTTCTGCGGTCG 1040
||| | | | || || || ||||| | ||| |||| || | ||||| | || || |
Sbjct 1087 ACA-CGGGTTGCGCCTCAAGTACCAAC-CAAGGTCCGTGAAGCATTCATCACCGCTGTTG 1144
Query 1041 AAAAAGGTAACATAAGAACAATGCCTAACCGAAGCATGCCAGCCGACCCAATTCATACAC 1100
| |||||||| || ||||| ||||| ||||||||||||||||| || || |||| ||| |
Sbjct 1145 AGAAAGGTAATATCAGAACCATGCCAAACCGAAGCATGCCAGCTGATCCGATTCCTACTC 1204
Query 1101 CCGGAGCTCTGCTT-TTAGGCGACGCATTCAACATGCGCCATCCTCTTA-CCGGAGGCGG 1158
| |||||||| ||| || || || |||||||||||| | |||||| ||| |||| || ||
Sbjct 1205 CTGGAGCTCTTCTTCTT-GGTGATGCATTCAACATGAGACATCCT-TTAACCGGTGGTGG 1262
Query 1159 TATGACCGTCGCATTGTCTGATATAGTCATCCTCCGCGATCTAT-TAAACCCGCT-CGTC 1216
|||||||| |||||| | |||||||| | ||||| ||||| | ||| || | || |
Sbjct 1263 GATGACCGTTGCATTGGCGGATATAGTTGTACTCCGTGATCT-TCTAAGGCCAATTCG-C 1320
Query 1217 GAC-TTAACCAACAAAGA-GTCCTTATCCAAATACATCGAATCGTTCTACACGTTGCGAA 1274
|| |||| | |||||| | | || || || || || ||||| || ||||| | ||||
Sbjct 1321 AACCTTAATGA-CAAAGAAG-CTTTGTCTAAGTATATTGAATCCTTTTACACACTACGAA 1378
Query 1275 AACCGGTTGCTTCGACTATCAATACGCTCGCAGGA-GCTCTT-TACAAAGTCTTTTTGGC 1332
|||| || ||||| || || ||||| | || ||| || || || || |||||||| ||
Sbjct 1379 AACCTGTAGCTTCCACCATTAATACATTGGC-GGATGCG-TTGTATAAGGTCTTTTTAGC 1436
Query 1333 TTCTCCAGACGATGCGAGAAGCG-AAATGCGTCGA-GCTTGCTTCGATTATCTTAGCCTC 1390
||| |||| || || |||| || |||||||| || ||||||||||| |||||||||||
Sbjct 1437 ATCTTCAGATGAAGCAAGAA-CGGAAATGCGT-GAAGCTTGCTTCGACTATCTTAGCCTT 1494
Query 1391 GGAGGGGTTTGCTCCTCAGGACCAGTGGCTTTGCTCTCAGGTTTGAACCCGCGACCTATG 1450
||||| |||| ||| || || ||||| || |||||||| ||||| ||||| || ||| ||
Sbjct 1495 GGAGGTGTTTTCTCATCTGGTCCAGTTGCATTGCTCTCTGGTTTAAACCCTCGTCCTCTG 1554
Query 1451 AGCCTT-GTTCTTCATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGTTTGCTTG-TAC 1508
|| || ||||| || ||||| || || ||||| | || ||| ||||||| | | |||
Sbjct 1555 AGT-TTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGTTTAAT-GCTAC 1612
Query 1509 C-TCTCCCTTCCG-TCAA-ACGGTTATGGCTCGGAGCGAG-ACTAATCTCGAGTGCTTCA 1564
| | ||| ||| | | | | | || ||||| ||||| || | |||||||||||||||||
Sbjct 1613 CATTTCC-TTC-GATTGAGA-GCTTTTGGCTTGGAGCTAGGA-TAATCTCGAGTGCTTCA 1668
Query 1565 GGGATAATATTTCCAATAATAAAAGCAGAAGGTGTGAGGCAAATGTTCTTCCCTCGAACT 1624
| || || ||||||||||| |||||||| || || || ||||||||||||||||| ||
Sbjct 1669 AGCATCATCTTTCCAATAATTAAAGCAGAGGGAGTTAGACAAATGTTCTTCCCTCGTACA 1728
Query 1625 ATTCCTGCCATTTACAGAGCTCCTCCT 1651
|| |||||||| ||| | |||||||||
Sbjct 1729 ATCCCTGCCATATACCGTGCTCCTCCT 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87800753205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5