BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490844

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37710.1 | Symbols:  | VQ motif-containing protein | chr4:17...   597    3e-170


> AT4G37710.1 | Symbols:  | VQ motif-containing protein | chr4:17718128-17718742 
FORWARD LENGTH=615
Length=615

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 410/450 (91%), Gaps = 14/450 (3%)
 Strand=Plus/Plus

Query  1    ATCAATATATATCAGAAG-ACATAAC-TTCACA-TCTACAGAATTTTAAGCGATATCTCT  57
            ||||||| |||||||||| ||||||| |||||| || | |||||||||||||| ||||| 
Sbjct  41   ATCAATAAATATCAGAAGAACATAACTTTCACATTC-AAAGAATTTTAAGCGACATCTCA  99

Query  58   AGTCTCAATGGAAGCAACATCACAGCAATTTATGTCTCAGAGTTACCTTAACGCTCAAGA  117
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  100  AGTCTCAATGGAAGCAACATCACAACAATTTATGTCTCAGAGTTACCTTAACGCTCAAGA  159

Query  118  AACCGCGACAAGGACAACGAAAAATTACCTAACATCGCTCCATTCGACCCGTAAACAACC  177
            |||| | |||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  160  AACCACCACAAGGGCAACGAAAAATTACCTAACTTCGCTCCATTCGACACGTAAACAACC  219

Query  178  TTCAAAGCCCTTGAAGAGGCCTGCAATATCATCATCATCCCCTTTGAATCCAATGCACCC  237
            |||||||||||||||||||||||||||||||||| |  |   ||||||||||||||| ||
Sbjct  220  TTCAAAGCCCTTGAAGAGGCCTGCAATATCATCA-C--C---TTTGAATCCAATGCATCC  273

Query  238  CCATGTGTACCGAGTCGAGCCAGTAAACTTCAAAGAGTTGGTTCAGAGGCTAACCGGTGC  297
             ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  274  TCATGTCTACCGAGTCGAGCCAGTAAACTTCAAAGTGTTGGTTCAGAGGCTAACCGGTGC  333

Query  298  ACCTGAGCATAAG-CTTGTGCAGGCTGAACCGCTCAAGAGTTTGGATGATGCAGCAAAGC  356
            |||||||||  || || ||||||||| |||||||||||| || |||||||||||||||||
Sbjct  334  ACCTGAGCACGAGACT-GTGCAGGCTAAACCGCTCAAGACTTCGGATGATGCAGCAAAGC  392

Query  357  AGAGTTCTTCATCATCTGCGTTTGATC-AGTCGTCTTCTTGGGGAGATTTCTCATTTCAA  415
            |||||||||| |||| ||||||||||| | || || |||||||||||||||||||| |||
Sbjct  393  AGAGTTCTTCGTCATTTGCGTTTGATCCA-TCATCATCTTGGGGAGATTTCTCATTCCAA  451

Query  416  AATCCTCCAAATCTTTCCAGATGGTAGCTT  445
            |||||| ||||| |||||||||||||||||
Sbjct  452  AATCCTGCAAATATTTCCAGATGGTAGCTT  481



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25669649117


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5