BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490847
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1046 0.0
> AT1G64310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23866053-23867711 FORWARD LENGTH=1659
Length=1659
Score = 1046 bits (566), Expect = 0.0
Identities = 661/707 (93%), Gaps = 5/707 (1%)
Strand=Plus/Plus
Query 179 CTTATGCTAAAGCTCATCAATTTAGTACT-TCTTTGTCACTCTTCTCTCAAATGCTGAGT 237
|||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||| ||
Sbjct 239 CTTATGCTAAAGCTCATCAATTTACTACTGT-TTTGTCACTCTTCTCTCAAATACTGCGT 297
Query 238 TCTGATACGAGACCTGATAACTTCACCTATGTGTG-TGTAGCTCGTGGCTTTTCAGAGAG 296
|||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 298 TCTGATACAAGACCTGATAACTTCACCTATGCGTGCT-TAGCTCGTGGCTTTTCAGAGAG 356
Query 297 TTTCGATTCAGAGGGGCTGAGACGTATTCATGGGATTGCAGTTGTATCCGGTCTTGGTTT 356
||| ||| || |||| |||||| ||||||||||||||||| |||| || |||||||||||
Sbjct 357 TTTTGATACAAAGGGACTGAGATGTATTCATGGGATTGCAATTGTGTCTGGTCTTGGTTT 416
Query 357 TGATCAAATTTGTGGCAGTGCAATTGTTAAAGCTTATTCAAATCCTGGACTTATCGTTGA 416
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 TGATCAAATTTGTGGCAGTGCAATTGTTAAAGCTTATTCAAAAGCTGGACTTATCGTTGA 476
Query 417 AGCAAGTAAGTTGTTTTGTTCAATACCAGATCCGGATCTTGCTCTGTGGAATGTTATGAT 476
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 477 AGCAAGTAAGTTGTTTTGTTCAATACCAGATCCAGATCTTGCTCTTTGGAATGTTATGAT 536
Query 477 TCTTGGATATGGATGCTGTGGATTTTGGGATAAAGGAATCAATTTGTTTAACTTGATGCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCTTGGATATGGATGCTGTGGATTTTGGGATAAAGGAATCAATTTGTTTAACTTGATGCA 596
Query 537 ACATCGGGGACATGTACCGAATTGTTATACAATGGTAGCCCTAATGACTGGTTTGATTGA 596
|||||| ||||| ||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 597 ACATCGAGGACACCAACCTAATTGTTATACAATGGTAGCCCTAACAAGTGGTTTGATTGA 656
Query 597 TCCTAGTTTGTTACTAATTGCTTGGTCCGTTCATGGATTTTGTTTGAAAATCAATTTAGA 656
||||||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 657 TCCTAGTTTGTTACTCGTTGCTTGGTCTGTTCATGCATTTTGCTTGAAAATCAATTTAGA 716
Query 657 TTCTCATTCTTATGTTGGTTGTGCTTTCGTTACCATGTACTCGAGATGCATGTGCATAGC 716
||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||
Sbjct 717 TTCTCATTCTTATGTTGGTTGTGCTTTAGTGAACATGTACTCGAGATGCATGTGCATTGC 776
Query 717 TTCTGCTGGTAGTGTGTATAATAGCATCTGTGAGCCTGATTTAGTTGCATGTTCTTCTTT 776
||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct 777 TTCTGCTTGTAGTGTGTTTAATAGCATCTCTGAGCCTGATTTAGTTGCGTGTTCTTCTTT 836
Query 777 GATAACTGGTTATTCGAGGTGCGGGATTCACAAGGAGGCTTTGCATCTGTTTGCTGAGCT 836
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 837 GATAACTGGTTATTCGAGATGCGGGAATCACAAGGAGGCTTTGCATCTGTTTGCTGAGCT 896
Query 837 GAGAATGAGTAGTAAGAAGCCAGATTGTGTTCTTGTGGCGATT-TAT 882
|||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 897 GAGAATGAGTGGTAAGAAGCCAGATTGTGTTCTTGTGGCGATTGTAT 943
Score = 279 bits (151), Expect = 3e-74
Identities = 170/179 (95%), Gaps = 1/179 (1%)
Strand=Plus/Plus
Query 1051 ATCACTTTCTCTGCTCTTCTTTGTAATTGTTGCCATTCGGGTCTTTTAGACAAAGGTCAA 1110
||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 1228 ATCACTTTCTCTGCTCTTCTTTGTACTTGTTGCCATTCAGGTCTTTTAAACAAAGGTCAA 1287
Query 1111 GAGATCTTCGAGAGGATGAAGAGTGAGTTTGGTATTGAGCCGCAAACAGAGCATTATGTT 1170
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 GAGATCTTTGAGAGGATGAAGAGTGAGTTTGGTATTGAGCCGCAAACAGAGCATTATGTT 1347
Query 1171 TACATGGTGAAGCTAATGGGAATGGCTGGAAAACTGGAAGAAGCATTTGAATTTG-AAT 1228
|||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| |||
Sbjct 1348 TACATGGTTAAGCTAATGGGAATGGCAGGAAAACTAGAAGAAGCATTTGAGTTTGTAAT 1406
Score = 195 bits (105), Expect = 1e-48
Identities = 130/142 (92%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 38 ATACCCAGAAACTGCATAGCTTTGTTACCAAGTCCAAACTCTCGCGTGACCCGTATTTCG 97
|||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 68 ATACCCAGAAGCTGCATAGCTTTGTTACCAAGTCCAAACTCGCGCGCGACCCATATTTCG 127
Query 98 CGGCGCAACTTGTTAGATTCTATGCGTTAAACGATGATCT-ACTGTCTGCTCGCAAACTA 156
|| ||||||||| |||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 128 CGACGCAACTTGCCAGATTCTATGCGTTAAACGATGATCTTA-TATCTGCTCGCAAACTG 186
Query 157 TTCGACGTATTTCTTGAGAGAA 178
||||||||||||| ||||||||
Sbjct 187 TTCGACGTATTTCCTGAGAGAA 208
Score = 141 bits (76), Expect = 2e-32
Identities = 132/158 (84%), Gaps = 8/158 (5%)
Strand=Plus/Plus
Query 900 GGTGTGCTCTGGTCTTATAGACATGTACTCAAAATGTGGGCTTCTGGATT-CTGCGATGA 958
||| ||||||| ||||||||||||||||||||||||||||||||| | | | |||||||
Sbjct 1032 GGTTTGCTCTGCTCTTATAGACATGTACTCAAAATGTGGGCTTCTAAAATGC-GCGATGA 1090
Query 959 ATCTTTTTGCGGGGATTCCAGAGAAACACATTGTTTCATTCAACTCCGTTATTTCA---C 1015
|||||| || || |||||||||||| |||||||||| ||||||||| |||||| |
Sbjct 1091 GTCTTTTCGCAGGAATTCCAGAGAAAAACATTGTTTCTTTCAACTCCCTTATTTTGGGTC 1150
Query 1016 --GGTTTACACGGTTTTGCTTCCTCTGCGTTAGGAAAA 1051
|| || ||||||||||||||| ||||||| | ||||
Sbjct 1151 TTGGCTTGCACGGTTTTGCTTCCACTGCGTTTG-AAAA 1187
Score = 104 bits (56), Expect = 2e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1225 GAATTTTGGGAGCACTATTGTCATGTTGTGAAGTTCATGAGAACACTCATTTGGCTGAA 1283
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1433 GAATTTTGGGAGCACTATTGTCATGTTGCGAAGTTCATGAGAACACTCATTTGGCTGAA 1491
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1 ATGGCCTCGCAGACGCAGTTACGTTTGATTATCTATGA 38
||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTCGCAGACGCAGTTACGTTTGATTATCTATGA 38
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63102085065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5