BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490856
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679279-17... 1818 0.0
> AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679279-17681202
FORWARD LENGTH=1604
Length=1604
Score = 1818 bits (984), Expect = 0.0
Identities = 1231/1345 (92%), Gaps = 38/1345 (3%)
Strand=Plus/Plus
Query 80 CGCCGCCGTTAAATGGGTGAGCCCAGTGACAGTCTCGCTCTCTTTCTCTGCCACGAATCC 139
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 207 CGCCGCCGTTAAATGGGTGAGCCTAAAGACAGTCTCGCTCTCTTCCTCTGCCACGAATCG 266
Query 140 GAGTCTTCTCTAAACGAAGACGACGA-AAGA--ATCGAGAGATCTG---AG---G-A--G 187
|||||||||||||||||||||||||| ||| || |||||||||| || | |
Sbjct 267 GAGTCTTCTCTAAACGAAGACGACGACGAGACGATTGAGAGATCTGATAAGCAAGAACCT 326
Query 188 CACTTTCCTACTACGATCGGTGATGATGAAGATTATGTGGCAGAGCTTGTTCTTAAAGAG 247
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 327 CACTTTACTACTACGATC---GATGATGAAGATTATGTGGCAGACCTTGTTCTTAAAGAG 383
Query 248 AATCGGAGATTCGAAACCGAACCCACTAAAACGACGTCGTCTGT-CGATAGATTGATTGC 306
|||| ||||||||||| |||| ||||||||||||||||| | |||||||||||||||
Sbjct 384 AATCTCCGATTCGAAACCCTACCCTCTAAAACGACGTCGTCT-TCCGATAGATTGATTGC 442
Query 307 AATCGATTGGATTCTCACTACAAGAACAAGATTTGGATTCCAACAGCAAACAGCTTACAT 366
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 443 CATCGATTGGATTCTCACTACAAGAACAAGATTTGGGTTCCAACATCAAACAGCTTACAT 502
Query 367 TGCAATCTCATACTTGGATCTGTTTCTCCAGAGAAGATTCATCGGTTTGCAGAGAGATGA 426
||||||||||||||| |||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 503 TGCAATCTCATACTTCGATCTGTTTCTCCACAAAAGATTCATCGGTTTGCAGAAAGATGA 562
Query 427 AACATGGGCGATTCGATTGTTATCAGTAGCTTGTTTATCATTAGCTGCGAAAATGGAGGA 486
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 563 AACATGGGCGATGCGATTGTTATCAGTAGCTTGTTTATCATTAGCTGCTAAAATGGAGGA 622
Query 487 ACGAATTGTTCCTGGATTATCACAATACCCTCAAGATCATGATTTTGTTTTCAAATCCGA 546
||| ||||||||||| |||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 623 ACGTATTGTTCCTGGTTTATCACAATACCCTCAAGATCATGACTTCGTTTTCAAACCCGA 682
Query 547 TGTGATTCGTAAAACTGAATTGCTGGTTCTATCGACATTGGATTGGAAAATGAACTTAAT 606
||| ||||||||||||||| || || ||||||| |||||||| ||||| |||||||| ||
Sbjct 683 TGTCATTCGTAAAACTGAACTGTTGATTCTATCCACATTGGACTGGAAGATGAACTTGAT 742
Query 607 CACTCCTTTTCATTACTTGAACTACTTCGTTGCTAAAACCTCTC---CCGACCATTCTGT 663
|||||||||||||||||| ||||||||| ||||||||| ||||| | ||||||||||
Sbjct 743 CACTCCTTTTCATTACTTCAACTACTTCCTTGCTAAAATCTCTCAGGACAACCATTCTGT 802
Query 664 TTCTAAAGAGTTGGTTTTGTTAAGATCCTCTGATTCTCTTCTTGCTCTAACTAAAGAGAT 723
||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 803 TTCTAAAGACTTGGTGTTGTTAAGATCCTCTGATTCTCTTCTTGCTTTAACTAAAGAGAT 862
Query 724 AAGTTTTACGGATTATCGACAGTTCGTTGTTGCTGCTGTTACTACAATGTTAG---CTTC 780
|||||||||||| ||||||||||| ||||||||||||||||||||| || ||| ||||
Sbjct 863 AAGTTTTACGGAGTATCGACAGTTTGTTGTTGCTGCTGTTACTACATTGCTAGCTTCTTC 922
Query 781 TTCTACTTCATCGGATATTAGATTGACGAGAGAAGAGATAGCGAACAAGTTTGGATCGAT 840
|||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 923 TTCTACCTCATCGGATATTAGATTGACTAGAGAAGAGATAGCTAACAAGTTTGGTTCGAT 982
Query 841 TTCTTGGTGGACGTCTAATGAAAATGATAATGTATATTTGTGTTATCAGAGAATGCTAGA 900
||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 983 CTCTTGGTGGACTTCTAATGAGAATGAAAATGTATATTTGTGTTATCAGAGAACGCTAGA 1042
Query 901 GATTGAGGAGAGGAAACATATGACACCGCCGCCGGAAATAGCGGTTCCCCGCGAACCACC 960
||||||||||||||||||||||||||| || ||||||||||||||| | |||||||| ||
Sbjct 1043 GATTGAGGAGAGGAAACATATGACACCTCCACCGGAAATAGCGGTTTCTCGCGAACCGCC 1102
Query 961 GGCTTCAGGAAGTGGCGCTAAACGCCGATTGTCTTTTGATGATCCTGATCAAACTTCTCC 1020
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1103 GGCTTCAGGAAGTGGCGCTAAACGCCGATTGTCTTTTGATGATTCTGATCAAAGTTCTCC 1162
Query 1021 TCCAGCCAAGAGAACGCGTAGGCTCTG-A-AGAGAGTTACTTTCTTCTTGAAGttttggc 1078
||||||||||||| ||||||||| || | |||||||| |||||||||| ||||||||||
Sbjct 1163 ACCAGCCAAGAGAATGCGTAGGCTATGAAGAGAGAGTTTCTTTCTTCTTCAAGTTTTGGC 1222
Query 1079 ttatattgatttggtttcttttttggcaacatattgatttggtttttatattCAATCATT 1138
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1223 TTATATTGATTTGGTTTCTTTTTTGGCAACATATTGATTTGG-TTTTATATTCAATCATT 1281
Query 1139 TGATTATAGAGaaaaaaaTGGTCTGAATACAAT-GGTTATTTCAATTTTTATGAAGTAAC 1197
||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1282 TGATTATAGAG-AAAAAATGGTCTGAATAC-ATCGGTTATTTCAATTTTTATGAAGTAAC 1339
Query 1198 TCATATAGGTTCTTCTTATGAAGGTCTTTGGATTTTACTTTTGGGG-TGAAATGTGACT- 1255
||||||||||||||| |||||||||||||||| ||| | |||||| ||||||||||||
Sbjct 1340 TCATATAGGTTCTTCGTATGAAGGTCTTTGGA-TTT-C--TTGGGGATGAAATGTGACTA 1395
Query 1256 TTCAAAACATTAGGGGCTTTTTTGAGAGAAT-TAATGAAATAAGAGGAGTGAATGTAAAT 1314
|| |||||||||||||||| | ||||||||| | | |||||| |||||||||||||||||
Sbjct 1396 TT-AAAACATTAGGGGCTTCTCTGAGAGAATCT-AGGAAATATGAGGAGTGAATGTAAAT 1453
Query 1315 AAATAAGAAAAACAGAAAGGGTGAATAGTTTTAGGCCAATAGTTGCAGTGCCAGTGATTT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 AAATAAGAAAAACAGAAAGGGTGAATAGTTTTAGGCCAATAGTTGCAGTGCCAGTGATTT 1513
Query 1375 GGTTTCACATCCTCTTTTATTTTTT 1399
|||||||||||||||||||||||||
Sbjct 1514 GGTTTCACATCCTCTTTTATTTTTT 1538
Score = 67.6 bits (36), Expect = 3e-10
Identities = 43/46 (93%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 20 TTTATAATT-CCC-TTTGATGTGTACGGACACACCACCGAAGAAGA 63
||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 106 TTTATAATTCCCCTTTTGATGTGTACGGACACACCACCGAAGCAGA 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68925348285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5