BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490858
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37610.1 | Symbols: BT5 | BTB and TAZ domain protein 5 | chr... 1832 0.0
AT4G37608.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 139 6e-32
> AT4G37610.1 | Symbols: BT5 | BTB and TAZ domain protein 5 | chr4:17670481-17672353
REVERSE LENGTH=1438
Length=1438
Score = 1832 bits (992), Expect = 0.0
Identities = 1239/1352 (92%), Gaps = 42/1352 (3%)
Strand=Plus/Plus
Query 49 TTATCACCAGAGGAT-A--ATAATAA-TCAGAACAATCA-TAGT--TTTAGTGGTGAAGT 101
|||||| |||||||| | |||| || ||||||||||| || | ||||||||||||||
Sbjct 106 TTATCAACAGAGGATAAGGATAA-AACCCAGAACAATCATTA-TAATTTAGTGGTGAAGT 163
Query 102 TGAACAAATTTATAAACTGAT-CAATATTCGAATTCAAAAAAGA-ATGGAGAACATTGAC 159
||| ||||||||||||||||| |||| || || || || ||| ||||||||||| |||
Sbjct 164 TGACCAAATTTATAAACTGATCCAAT-TTTAAAATC-TAAGAGATATGGAGAACATGGAC 221
Query 160 GATTTCTCACCGGAAAAAGCCTCAGCACCACCAACACCACCAACACCTCCTCCGGT-AA- 217
|||||||||||||| || | | ||||||| | ||||| | |||||||||| | ||
Sbjct 222 GATTTCTCACCGGAGAATGTTTTAGCACCA-C--CACCA-C--CACCTCCTCCAATGAAG 275
Query 218 AA-TCAATGGATCTGTTTATGCAAAGAAGCAATAGTTTTGTTTCTAAAGCTACAAGAGAT 276
|| |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 276 AAGTCAACGGATCTGTTTATGCAAAGAAGCAATAGCTTTGTTTCTAAAGCTACGAGAGAT 335
Query 277 TCATGGGATCGTATGTTTGATGGAGCTCATGGAGCTGATGTTTTGATTCATACTGATCAT 336
||||||||||||||||| || | |||||||||||||||||||||||||||||||||| ||
Sbjct 336 TCATGGGATCGTATGTTCGACGAAGCTCATGGAGCTGATGTTTTGATTCATACTGATGAT 395
Query 337 AATGGTTTGATTTACGCGCATTCTAATGTCATCGGAATGGCTTCAGATGTAATCAGAGGA 396
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AATGGTTTGATTTACGCACATTCTAATGTCATCGGAATGGCTTCAGATGTAATCAGAGGA 455
Query 397 ATGATGAAGCAAGATAAGAGAAAATCTCATCGTAAATCGATTTCAATCCTCGGTGTCCCT 456
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 456 ATGATGAAGCAACATAAGAGAAAATCTCATCGTAAATCGATTTCAATCCTCGGTGTTCCT 515
Query 457 CACGATGCTGTTCGAGTTTTCATTCGATTCTTATACTCTTCTTGCTATGAGAAACAAGAT 516
||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CACCACGCTCTTCGAGTTTTCATTCGATTCTTATACTCTTCTTGCTATGAGAAACAAGAT 575
Query 517 ATGGAAGATTTCGCAATGCATCTTCTTGTGCTATCACATGTCTACGTGGTTCCGCATTTG 576
||||| ||||| ||||| ||||| |||||| |||||||||||||||| || |||||||||
Sbjct 576 ATGGAGGATTTTGCAATACATCTACTTGTGTTATCACATGTCTACGTTGTACCGCATTTG 635
Query 577 AAACGAGTGTGCGAATCAGAATTCGAAAACATTTTGCTCAACAAAGAGAATGTGATTGAT 636
|| ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 636 AAGCGAGTCTGCGAATCAGAATTCGAAAGTAGTTTGCTCAACAAAGAGAATGTGATTGAT 695
Query 637 GTGTTTCAGCTAGCTCTTCTCTGTGATGCTCCTCGTCTCGGTCTTCTCTGTCACAGAATG 696
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 696 GTGTTTCAGCTAGCTCTTCTATGTGATGCTCCTCGTCTCGGTCTTCTCTGTCATAGAATG 755
Query 697 ATTCTAAAGAACTTTGAAGAAGTTTCTACTTCTGAAGGATGGCAAGCAATGAAAGAGAGC 756
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 ATTCTAAACAACTTTGAAGAAGTTTCTACTTCTGAAGGATGGCAAGCAATGAAAGAGAGC 815
Query 757 CATCCTAGACTTCAAAAGGAGCTTTTACGCTCTGTCGCTTACGAGCTTAATAGCTTGAAG 816
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CATCCTAGACTTCAAAAAGAGCTTTTACGCTCTGTCGCTTACGAGCTTAATAGCTTGAAG 875
Query 817 CAAAGAAACAGGAAACAGAAAGAGATACAGACATACACACAGCTATATGAAGCAATGGAA 876
|||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||
Sbjct 876 CAAAGAAACAGGAAACAGAAGGAGATACAGACTTATACACAGCTCTATGAAGCAATGGAG 935
Query 877 GCTTTTGTTCATATTTGTAGAGATGGATGCAGAGAAATAGGTCCAACAAAGACCGAAACC 936
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 GCTTTTGTTCATATATGTAGAGATGGATGCAGAGAAATAGGTCCAACAAAGACCGAAACC 995
Query 937 CCGCATGTCTCGTGTGGATTTCAAGCGTGCAACGGTTTAGAGCAGCTATTGAAACATTTG 996
|||||| | || || |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 996 CCGCATATGTCATGCGGATTTCAAGCGTGTAATGGTTTAGAGCAGCTATTGAAACATTTG 1055
Query 997 GCGGGATGCAAACTAAGATCAATCCCTGGTGGTTGCAGCCGTTGCAAGAGAATGTGGCAG 1056
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1056 GCGGGATGCAAACTAAGATCAATCCCTGGTGGTTGTAGCCGTTGCAAGAGAATGTGGCAG 1115
Query 1057 CTTCTTGAGCTTCATTCGCGTATTTGCGTAGACTCGGAACAATGTAAAGTCCCTCTTTGC 1116
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1116 CTTCTTGAGCTTCATTCGCGCATTTGCGTAGACTCGGAACAATGCAAAGTCCCTCTTTGC 1175
Query 1117 AGTAGTTTGAAGGAGAGGATGAAGACACAAAGCAGGAAAGATGAGAAAAGATGGAAACTT 1176
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1176 AGTAGTTTGAAAGAGAGGATGAAGACACAGAGCAGGAAAGATGAGAAAAGATGGAAACTT 1235
Query 1177 TTAGTGAAGAATGTTTTGAGCACCAAGAGAATTGGAGGATCGCCATTCTTTTTGCAGGCT 1236
|| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1236 TTGGTGAGGAATGTTTTGAGCACCAAGAGAATTGGAGGATCTCCATTCTTTTTGCAAGCA 1295
Query 1237 ATTGATGTTACTTTATGA-------CATTATT-TT--ATCGCTTTTAGATATAGAGATTG 1286
|||||||||||||||||| ||||||| || || |||||||||| |||| |||
Sbjct 1296 ATTGATGTTACTTTATGAGTTATGACATTATTATTTGATTGCTTTTAGATGTAGAAATTA 1355
Query 1287 CATATTTATACATTGTACATAGGTTGCAGATTCTTTGTAAAGATAGATCCGAGGTTCAAA 1346
||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 1356 CATATTTATACAT-GTACATAGGTTGCAGATTCTTTGTAAAGATAGAT------T-CAAA 1407
Query 1347 ATTT-CAATACCTAAGATCCAATCTTTGGCCC 1377
|||| ||| |||||||||||||||||||||||
Sbjct 1408 ATTTTCAA-ACCTAAGATCCAATCTTTGGCCC 1438
> AT4G37608.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 22 Blast hits
to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:17668951-17670631 FORWARD
LENGTH=665
Length=665
Score = 139 bits (75), Expect = 6e-32
Identities = 116/133 (87%), Gaps = 13/133 (10%)
Strand=Plus/Minus
Query 1249 TTATGACATTA-T-TTT-ATCGCTTTTAGATATAGAGATTGCATATTTATACATTGTACA 1305
||||||||||| | ||| || |||||||||| |||| ||| |||||||||||| ||||||
Sbjct 638 TTATGACATTATTATTTGATTGCTTTTAGATGTAGAAATTACATATTTATACA-TGTACA 580
Query 1306 TAGGTTGCAGATTCTTTGTAAAGATAGATCCGAGGTTCAAAATTT-CAATACCTAAGATC 1364
||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||
Sbjct 579 TAGGTTGCAGATTCTTTGTAAAGATAGAT------T-CAAAATTTTCAA-ACCTAAGATC 528
Query 1365 CAATCTTTGGCCC 1377
|||||||||||||
Sbjct 527 CAATCTTTGGCCC 515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5