BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490860
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37580.1 | Symbols: HLS1, COP3, UNS2 | Acyl-CoA N-acyltransf... 2254 0.0
AT2G23060.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1037 0.0
> AT4G37580.1 | Symbols: HLS1, COP3, UNS2 | Acyl-CoA N-acyltransferases
(NAT) superfamily protein | chr4:17658612-17660878
FORWARD LENGTH=1846
Length=1846
Score = 2254 bits (1220), Expect = 0.0
Identities = 1446/1552 (93%), Gaps = 28/1552 (2%)
Strand=Plus/Plus
Query 1 CTCCTACTTTTAAAACTCATCAT-AA-A-TAAAAAAGTAGCCGG--Gaa-aaaa-aaaaa 53
|||| |||||||||||||||||| || | ||||||||||||||| || |||| |||||
Sbjct 1 CTCCAACTTTTAAAACTCATCATAAATAGTAAAAAAGTAGCCGGAAAAATAAAATAAAAA 60
Query 54 GTCTATTTCTCTTTCCTTTAAAATCCAAATCCTATAAACTCATAGC-TTCTCTGTTCTTT 112
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 GTCTATTTCTCTTTCCTTTAAAATCCAAATCCTATAAACTCATAGCTTTCTCTGTTCTTT 120
Query 113 ACTTATACCTCACG---T---TATATATAGAGTTTCTATAAATGCTTCTCTATCCTCCCG 166
|||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 121 ACTTATACCTCACGTTATACATATATATAGAGTTTCTATAAATGCTTCTCTTTCCTCTCG 180
Query 167 AATAAATCTTCCTCACTTCTCTCATTTCCACACTCACCTTCctctctatatattaaaccc 226
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACAAATCTTCCTCACTTCTCTCATTTCCACACTCACCTTCCTCTCTATATATTAAACCC 240
Query 227 tatctacttcactcttcttctaactctaatctatctctctctctctt--tct-cttctct 283
||||||||| ||||||||||||||||||||| ||||||||| | || ||| ||||| |
Sbjct 241 TATCTACTTAACTCTTCTTCTAACTCTAATC--TCTCTCTCTAT-TTACTCTGCTTCTGT 297
Query 284 atctttctcttAAAGAAAC-AAACATGACGGTGGTTAGAGAGTACGACCCGAGCCGAGAC 342
||| |||| |||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 298 -TCTCACTCTGAAAGAACCAAAACATGACGGTGGTTAGAGAGTACGACCCGACCCGAGAC 356
Query 343 TTAGCCGGCGTAGAGGACGTGGAGCGACGGTGTGAGGTCGGACCAAGCGGCAAGCTTTCT 402
|||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 357 TTAGTCGGCGTGGAGGACGTGGAACGACGGTGTGAAGTCGGACCAAGCGGCAAGCTTTCT 416
Query 403 CTATTCACCGACCTTTTGGGTGACCCGATTTGTAGAATCCGACATTCACCTTCCTATCTC 462
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTTTTCACCGACCTTTTGGGTGACCCGATTTGTAGAATCCGACATTCACCTTCCTATCTC 476
Query 463 ATGTTGGTGGCTGAGATGGGTACGGAGAAGAAGGAGATAGTGGGCATGATTAGAGGATGT 522
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATGCTGGTGGCTGAGATGGGTACGGAGAAGAAGGAGATAGTGGGCATGATTAGAGGATGT 536
Query 523 ATCAAAACCGTTACATGTGGCAAAAAACTCGATTTAAATCATACTAAATCCCAAAACGAC 582
||||||||||||||||||||| ||||||||||||||||||| | ||||| ||||||||
Sbjct 537 ATCAAAACCGTTACATGTGGCCAAAAACTCGATTTAAATCA--C-AAATCTCAAAACGAT 593
Query 583 GTCGTTAAGCCTCTTTACACTAAACTCGCTTACGTTTTGGGCCTTCGTGTCTCTCCTTTC 642
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 594 GTCGTTAAGCCTCTTTACACTAAACTCGCTTACGTCTTGGGCCTTCGCGTCTCTCCTTTT 653
Query 643 CACAGGAGACAAGGGATTGGGTTTAAGCTCGTGAAGATGATGGAGGAATGGTTTAGACAA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CACAGGAGACAAGGGATTGGGTTTAAGCTCGTGAAGATGATGGAGGAATGGTTTAGACAA 713
Query 703 AACGGTGCTGAATATTCGTATATTGCTACTGAGAACGATAATCAAGCTTCTGTGAATTTG 762
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 714 AACGGAGCTGAGTATTCGTATATTGCAACTGAGAACGATAATCAAGCTTCTGTGAATTTG 773
Query 763 TTCACCGGAAAATGTGGTTATTCTGAGTTTCGTACGCCGTCGATTTTGGTTAATCCGGTT 822
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 774 TTCACCGGGAAATGTGGTTATTCGGAGTTTCGTACACCGTCGATTTTGGTTAACCCGGTT 833
Query 823 TACGCTCATCGAGTTAATGTCTCTCGGCGAGTCACCGTTATTAAACTAGACCCGGTTGAT 882
|||||||||||||||||||| || ||||||||||| ||||| || |||| |||||||||
Sbjct 834 TACGCTCATCGAGTTAATGTTTCGCGGCGAGTCACGGTTATCAAGTTAGAGCCGGTTGAT 893
Query 883 GCTGAGACGTTGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGAT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GCTGAGACGTTGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGAT 953
Query 943 TCTGTTCTCAATAACAAACTCTCGCTCGGGACATTCGTAGCAGTGCCACGTGGAAGCTGT 1002
|| || || ||||||||||||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 954 TCGGTACTTAATAACAAACTCTCGCTTGGGACTTTCGTCGCGGTGCCACGTGGAAGCTGT 1013
Query 1003 TATGGATCCGGGTCTGGATCATGGCCCGGTTCGGCTAAATTCCTCGAATACCCGCCCGAG 1062
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1014 TATGGATCCGGGTCTGGATCATGGCCCGGTTCGGCTAAATTCCTCGAATATCCACCCGAG 1073
Query 1063 TCTTGGGCCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCGGTTAGAAGTACGTGGC 1122
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1074 TCATGGGCCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCTGTTAGAAGTACGTGGA 1133
Query 1123 GCGTCGAGATTAAGACGCGTGGTGGCTAAAACGACTCGCGTGGTTGATAAAACGTTGCCG 1182
||||||||||| ||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct 1134 GCGTCGAGATTGAGACGTGTGGTGGCTAAAACGACGCGAGTAGTTGATAAAACGTTGCCG 1193
Query 1183 TTTTTGAAACTCCCTTCGATACCATCTGTTTTTGAGCCTTTTGGGCTTCACTTTATGTAT 1242
||| ||||||| ||||||||||| || ||||| || |||||||| ||||| |||||||||
Sbjct 1194 TTTCTGAAACTACCTTCGATACCGTCCGTTTTCGAACCTTTTGGACTTCATTTTATGTAT 1253
Query 1243 GGAATTGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCGTTGTGTGCTCACGCG 1302
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1254 GGAATCGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCCTTGTGTGCTCACGCG 1313
Query 1303 CATAACTTGGCTAAAGAAGGAGGTTGTGGTGTTGTGGCGGCGGAAGTTGCCGGAGAAGAG 1362
|||||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1314 CATAACTTGGCTAAGGCAGGTGGTTGTGGTGTCGTGGCGGCGGAAGTTGCCGGAGAAGAC 1373
Query 1363 CCGTTACGGCGAGGGATACCACATTGGAAAGTGTTATCGTGTGCCGAGGATCTTTGGTGT 1422
||||| |||||||| |||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1374 CCGTTGCGGCGAGGAATACCACATTGGAAAGTGCTATCGTGTGACGAGGATCTTTGGTGT 1433
Query 1423 ATTAAA-CGGCTTGGGGATGATTATAGTGATGGTGTTGTTGGTGATTGGACTAAATCGCC 1481
|| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1434 AT-AAAGCGGCTTGGAGATGACTATAGTGATGGTGTTGTTGGTGATTGGACTAAATCGCC 1492
Query 1482 ACCTGGCGTTTCAATTTTTGTAGACCCTAGAGAAttttaaa-cttttttttt 1532
|||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1493 ACCTGGCGTTTCCATTTTTGTAGACCCTAGAGAATTTTAAAACTTTTTTTTT 1544
Score = 193 bits (104), Expect = 6e-48
Identities = 120/127 (94%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 1548 tttttgcttttcttgt-ttttgtttttgTGGGTG-T-TAAATTAGTGGTAAGAGGCAATA 1604
|||||| |||| || | ||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 1661 TTTTTG-TTTTGTTTTGTTTTGTTTTTGTGGGTGTTATAAATTAGTGGTAAGAGGTAATA 1719
Query 1605 TCTCCTACTTTTGGGTTTGTGTCTTCTTGTCTTGTAAATGGATCTAGCTTTTTAAGATAC 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 TCTCCTACTTTTGGGTTTGTGTCTTCTTGTCTTGTAAATGGATCTAGCTTTTTAAGATAC 1779
Query 1665 TTTTTCT 1671
|||||||
Sbjct 1780 TTTTTCT 1786
> AT2G23060.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr2:9812834-9814724 REVERSE LENGTH=1338
Length=1338
Score = 1037 bits (561), Expect = 0.0
Identities = 1023/1241 (82%), Gaps = 52/1241 (4%)
Strand=Plus/Plus
Query 315 GGTTAGAGAGTACGACCCGAGCCGAGACTTAGCCGGC-GTAGAGGACGTGGAGCGACGGT 373
||||||||| |||||||| || |||||||||| | ||||| || || || || ||||
Sbjct 109 GGTTAGAGAATACGACCCAAGTAAAGACTTAGCC-ACTGTAGAAGATGTTGAACGGCGGT 167
Query 374 GTGAGGTCGGACCAAG-CGGCAAGCTTTCTCTATTCACCGACCTTTTGGGTGACCCGATT 432
| || || || || || ||| || |||||||| |||||||| || || |||||||| |||
Sbjct 168 GCGAAGTTGG-CCCAGCCGGAAAACTTTCTCTCTTCACCGATCTCTTAGGTGACCCTATT 226
Query 433 TGTAGAATCCGACATTCACCTTCCTATCTCATGTTGGTGGCTGAGATGGGTACG---GAG 489
|| | |||||||||||||||| || |||||| ||||||||||||| ||| || |||
Sbjct 227 TGCCGTGTCCGACATTCACCTTCTTACCTCATGCTGGTGGCTGAGATTGGTCCGAAAGAG 286
Query 490 AAGAAGGAGATAGTGGGCATGATTAGAGGATGTATCAAAACCGTTACATGTGG------C 543
||||| ||| |||| || |||||| | |||||||||||||||||||||||||| |
Sbjct 287 AAGAAAGAGTTAGTTGGAATGATTCGGGGATGTATCAAAACCGTTACATGTGGTATCACC 346
Query 544 A--AAAA-ACTCGATTTAAATCAT-ACTAAATCCCAAAACGACGTCG---TT---AAGCC 593
| |||| ||| ||||||| |||| || |||||||||||||| |||| || || ||
Sbjct 347 ACCAAAAGACTTGATTTAACTCATAAC-AAATCCCAAAACGATGTCGTTATTACCAAACC 405
Query 594 TCTTTACACTAAACTCGCTTACGTTTTGGGCCTTCGTGTCTCTCCTTTC-CACAGGAGAC 652
||||||||||||||||||||| ||||||| || || || ||||| | | ||| ||||||
Sbjct 406 ACTTTACACTAAACTCGCTTACATTTTGGGTCTCCGCGTTTCTCC-TACACACCGGAGAC 464
Query 653 AAGGGATTGGGTTTAAGCTCGTGAA-GATGATGGAGGAATGGTTTAGACAAAACGGTGCT 711
||||||| ||||||||||||||||| | | ||||| || |||||||| |||||||| |||
Sbjct 465 AAGGGATAGGGTTTAAGCTCGTGAAGGCT-ATGGAAGATTGGTTTAGTCAAAACGGGGCT 523
Query 712 GAATATTCGTATATTGCTACTGAGAACGATAATCAAGCTTCTGTGAAT-TTGTTCACCGG 770
|||||||| ||| |||| ||||| ||||| ||||| ||||| || ||| || ||||||||
Sbjct 524 GAATATTCCTATTTTGCAACTGAAAACGACAATCACGCTTCCGTCAATCTT-TTCACCGG 582
Query 771 AAAATGTGGTTATTCTGAGTTTCGTACGCCGTCGATTTTGGTTAATCCGGTTTACGCTCA 830
|||||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 583 AAAATGTGGTTACGCCGAGTTTCGTACACCGTCTATTTTGGTTAACCCGGTTTACGCACA 642
Query 831 TCGAGTTAATGTCTCTCGGCGAGTCACCGTTATTAAACTAGACCCGGT-TGATGCTGAG- 888
|| || || | ||||| || || ||||| ||||| || || || || ||||||||||
Sbjct 643 CCGGGTCAACATTTCTCGTCGGGTTACCGTAATTAAGCTTGAACC-GTCTGATGCTGAGT 701
Query 889 -ACGTTGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGATTCTGT 947
|| | ||||| | |||||||||||||| ||||||||||| || || ||||| |||||
Sbjct 702 TAC--TATACCGGCTTCGGTTTAGCACAACCGAGTTTTTCCCTCGCGACATTGACTCTGT 759
Query 948 TCTCAATAACAAACTCTCGCTCGGGACATTCGTAGCAGTGCCACGTGGAAGCTGTTATGG 1007
| | ||||||||||||||| | || |||||||| || || |||||||| || ||||| ||
Sbjct 760 TTTGAATAACAAACTCTCGTTAGGAACATTCGTCGCGGTTCCACGTGGCAGTTGTTACGG 819
Query 1008 ATCCGGGTCT-GGATCATGGCCCGGTTCGGCTAAATTCCTCGAATACCCGCCCGAGTCTT 1066
|||||||||| || |||||||||||||||||||| ||| | || || || || || || |
Sbjct 820 ATCCGGGTCTAGG-TCATGGCCCGGTTCGGCTAAGTTCTTGGAGTATCCACCGGACTCGT 878
Query 1067 GGGCCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCGGTTAGAAGTACGTGGCGCGT 1126
|||| || |||||||||||||||||||||||||||||| | |||||||| || |||||||
Sbjct 879 GGGCGGTTTTAAGCGTGTGGAATTGTAAAGACTCGTTTAGATTAGAAGTTCGCGGCGCGT 938
Query 1127 CGAGATTAAGACGCGTGGTGGCTAAAA-CGACTCGCGTGGTTGATAAAACGT-TGCCGTT 1184
||||||| || |||||||| | |||| |||| ||| ||||||||||||| | | |||||
Sbjct 939 CGAGATTGAGGCGCGTGGTTTC-AAAAGCGACGCGCATGGTTGATAAAAC-TCTACCGTT 996
Query 1185 TTTGAAACTCCCTTCGATACCATCTGTTTT-TGAGCCTTTTGGGCTTCACTTTATGTATG 1243
||||||| | || ||||| || | ||||| | ||| |||||||| || |||||||| |
Sbjct 997 TTTGAAAATACCGTCGATCCCGGCGGTTTTCCG-GCCGTTTGGGCTGCATTTTATGTACG 1055
Query 1244 GAATTGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCGTTGTGTG-CTCACGCG 1302
|||| || |||||||| |||||||||| ||| |||||||| | ||||||| | || ||
Sbjct 1056 GAATCGGCGGAGAAGGACCACGCGCGGAGAAAATGGTGAAGGCATTGTGTGAC-CATGCA 1114
Query 1303 CATAACTTGGCTAAA-GAAGGAGGTTGTGGTGTTGTGGCGGCGGAAGTTGCCGGAGAAGA 1361
||||| ||||| ||| |||||||| || || || |||||||| ||||| ||||| |||||
Sbjct 1115 CATAATTTGGC-AAAGGAAGGAGGATGCGGCGTGGTGGCGGCAGAAGTCGCCGGCGAAGA 1173
Query 1362 GCCGTTACGGCGAGGGATACCACATTGGAAAGTGTTATCGTGTGCCGAGGATCTT-TGGT 1420
|||| | |||||||||||||| |||||||||||| ||||||| || |||||| || ||||
Sbjct 1174 GCCGCTCCGGCGAGGGATACCGCATTGGAAAGTGCTATCGTGCGCTGAGGAT-TTGTGGT 1232
Query 1421 GTATTAAACGGCTTGGGGATGATTATAGTGATGGTGT-TGTTGGTGATTGGACTAAATCG 1479
|||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||
Sbjct 1233 GTATTAAACGGCTTGGAGAAGATTATAGTGATGGT-TCTGTTGGTGATTGGACTAAATCG 1291
Query 1480 CCACCTGGCGTTTCAATTTTTGTAGACCCTAGAGAAtttta 1520
|||||||||| ||| |||||||| |||||||||||||||||
Sbjct 1292 CCACCTGGCGATTCTATTTTTGTTGACCCTAGAGAATTTTA 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5