BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490862
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37550.1 | Symbols: | Acetamidase/Formamidase family protei... 2302 0.0
AT4G37560.1 | Symbols: | Acetamidase/Formamidase family protei... 1836 0.0
AT4G37553.1 | Symbols: | Potential natural antisense gene, loc... 453 2e-126
> AT4G37550.1 | Symbols: | Acetamidase/Formamidase family protein
| chr4:17643570-17645830 FORWARD LENGTH=1574
Length=1574
Score = 2302 bits (1246), Expect = 0.0
Identities = 1403/1479 (95%), Gaps = 10/1479 (1%)
Strand=Plus/Plus
Query 1 TTTTTACTGTAACAAGGACaaaagaaagagagaaaataaaagagatatatagaga-aaaa 59
|||| |||||| |||||||||||||||||||||||| ||||||| |||| ||||| ||||
Sbjct 12 TTTTCACTGTATCAAGGACAAAAGAAAGAGAGAAAACAAAAGAGTTATACAGAGAGAAAA 71
Query 60 tcgtgaatagagagaTCACTGTACTTATTGGGTTTTGATGTTTGATGGCTCCACTGAGTC 119
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 72 -CGTGAATAGAGAGATCACTGTACTTATTGGGTTTTGATCTTTGATGGCTCCACTGAGTC 130
Query 120 CAAGAGTGGTGGTGAAGGTGGATTTGAAGAAGAAGCCATGGCAGCAGAACCAGCCACTGC 179
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 131 CAAGAGTAGTGGTGAAGGTGGATTTGAAGAAGAAGCCATGGCAGCAGGACCAGCCATTGC 190
Query 180 ACAATAGATGGCATCCGGAGATACCACCAGTAGCAGAGGTCAAGGCTGGTGAGTTTTTCC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 ACAATAGATGGCATCCGGAGATACCACCAGTAGCAGAGGTCAAGGCTGGTGAGTTTTTCC 250
Query 240 GGGTGGAAATGATTGATTG-TATGGGAGGTGTTGTCAAAGACAATGACTCTGCAAGCGAT 298
|||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 251 GGGTAGAAATGATTGA-TGCAATGGGAGGTGTTATCAAAGACAATGACTCTGCAAGCGAT 309
Query 299 ATCAAGAACGC-AGACCTAACCACTACTCATCACCTAAGTGGGCCGATTAGGGTTGTGGA 357
||||||||| | || |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 310 ATCAAGAAC-CTAGTCCTAACTACTACTCATCACCTAAGTGGGCCGATTAGGGTTGTAGA 368
Query 358 TGAGGATGGTGTTGCAGCT-AAGCCAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGG 416
|||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 369 TGAGGAAGGTGTTGCAGCTAAAG-CAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGG 427
Query 417 GTCCTCTTCCAGGAGATGAATGGGGATTCACTGGTTCGTTTGATAGAGAGAATGGCGGCG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 428 GTCCTCTTCCAGGAGATGAATGGGGATTCACTGGTTCGTTTGATAGAGAGAATGGTGGCG 487
Query 477 GTTTCTTGACTGACCATTTCCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATCT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GTTTCTTGACTGACCATTTCCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATCT 547
Query 537 ATGCCTACTCTCCTCAAATTCCTGGAGTACGATTTCCGGGTTTGACACACCCAGGAGTCA 596
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 ATGCCTACTCTCCTCAGATTCCTGGAGTACGATTTCCGGGTTTGACACACCCAGGAGTCA 607
Query 597 TTGGCACCGCGCCATCGA-TGGAACTCCTGAGAATATGGAATGAAAGGGAAAGACAATTA 655
||||||| || ||||||| || ||||| |||||||||||||||| |||||||||||||||
Sbjct 608 TTGGCACTGCACCATCGAATG-AACTCTTGAGAATATGGAATGATAGGGAAAGACAATTA 666
Query 656 GAAGAAAGTGGTCTCAAGTCCCCAACACTATGTGAGGTTGTGCATCAACGGCCATTGGCA 715
|||||||||||| | |||||| ||||||||||||||| |||||||| |||||||| |||
Sbjct 667 GAAGAAAGTGGTGTTGAGTCCCTAACACTATGTGAGGTAGTGCATCAGCGGCCATTAGCA 726
Query 716 AACCTACCAACAGCTAAAGGATGCCTCCTAGGGAACATTGAAGAAGGAACACCAGAATGG 775
|||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 727 TGCCTACCAACAACTAAAGGATGTCTCCTCGGGAATATTGAAGAAGGAACACCAGAATGG 786
Query 776 GAAAGGATTGCTAACGAGGCTGCGAGGACGATACCAGGAAGAGAAAACGGAGGAAACTGT 835
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 787 GAAAGGATTGCAAACGAGGCTGCGAGGACAATACCAGGAAGAGAAAACGGAGGAAACTGT 846
Query 836 GACATTAAAAACCTAAGCAGAGGCTCTAAAATATATCTTCCAGTGTTTGTAGAAGGGGCT 895
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 847 GACATTAAAAACCTAAGCAGAGGCTCTAAAATATATCTTCCAGTATTTGTTGAAGGGGCT 906
Query 896 AATCTAAGCACAGGAGACATGCATTTCTCGCAAGGTGATGGTGAGATCTCATTCTGTGGA 955
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 907 AATCTAAGCACAGGAGACATGCATTTCTCACAAGGTGATGGTGAGATCTCGTTCTGCGGA 966
Query 956 GCCATCGAGATGAGTGGATTTCTAGAACTCAAGTGTGAAATCATAAGGAATGGGATGCAA 1015
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 967 GCCATCGAGATGAGTGGATTTCTAGAACTCAAGTGTGAAATCATAAGAAATGGGATGCAA 1026
Query 1016 GAATACCTTACGCCAATGGGACCGACCCCGCTCCATGTAAACCCAATCTTTGAGATAGGG 1075
|| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1027 GAGTACCTTACGCCAATGGGACCTACCCCTCTCCATGTAAACCCAATCTTTGAGATAGGA 1086
Query 1076 CCAGTTGAACCGAGATTCTCAGAATGGCTTGTCTTCGAAGGTATCAGTGTCGATGAGAGC 1135
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1087 CCAGTGGAACCGAGGTTCTCAGAGTGGCTTGTCTTCGAAGGTATCAGTGTCGATGAGAGC 1146
Query 1136 GGGAGACAACATTACCTGGATGCAACAGTTGCTTACAAACGGGCAGTTCTCAACGCCATA 1195
|| | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GGAAAACAGCATTACCTAGATGCAACAGTTGCTTACAAACGGGCAGTTCTCAACGCCATA 1206
Query 1196 GACTATCTCTTCAAATTTGGTTACTCAAAAGAACAGGTGTACCTCTTGCTCTCATGTTGT 1255
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1207 GACTATCTTTTCAAATTTGGTTACTCAAAAGAACAGGTGTACCTCTTACTCTCATGTTGT 1266
Query 1256 CCATGTGAAGGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTTGCA 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1267 CCATGTGAAGGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTAGCA 1326
Query 1316 ATACCTACTGCCATCTTTGATCAGGATATTCGGCCAAAGACCCGAAAGGTTCCAGCAGGA 1375
|||||||| ||||||||||||||||||||| ||||||||| || |||||||||| ||||
Sbjct 1327 ATACCTACAGCCATCTTTGATCAGGATATTAGGCCAAAGAATCGGAAGGTTCCAGTAGGA 1386
Query 1376 CCTCGGATAGTGAGGAAACCAGACGTACTGAAGAGCACATATGATGGAAAGCTTCCAATT 1435
|||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1387 CCTCGGGTTGTGAGGAAACCAGATGTACTGAAGAGCACATATGATGGAAAGCTTCCAATT 1446
Query 1436 ACAAAGAATCCAAGTTCTTCCTCTTAGCTTCTACAAAAA 1474
|||||||||||||||||||||||||||||||||||||||
Sbjct 1447 ACAAAGAATCCAAGTTCTTCCTCTTAGCTTCTACAAAAA 1485
> AT4G37560.1 | Symbols: | Acetamidase/Formamidase family protein
| chr4:17646408-17648684 FORWARD LENGTH=1667
Length=1667
Score = 1836 bits (994), Expect = 0.0
Identities = 1269/1402 (91%), Gaps = 17/1402 (1%)
Strand=Plus/Plus
Query 80 GTACTTATTGGGTTTTGATGTTTGATGGCTCCA-CTGAGTCCAAGAGTGGTGGTGAAGGT 138
|||||||||||| || | |||||||||||||| | |||||| ||||||||||||||||
Sbjct 61 GTACTTATTGGG-TTCG--GTTTGATGGCTCCAGC-AAGTCCACGAGTGGTGGTGAAGGT 116
Query 139 GGATTTGAAGAAGAAGCCATGGCAGCAGAAC-CAGCCACTGCACAATAGATGGCATCCGG 197
|||||||||||||| ||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 117 GGATTTGAAGAAGAGGCCATGGCAGCAG-ACTCAGCCACTGCACAATAGATGGCATCCTG 175
Query 198 AGATACCACCAGTAGCAGAGGTCAAGGCTGGTGAGTT-TTTCCGGGTGGAAATGATTGAT 256
|||||||| |||| |||||||||||| |||||||||| ||| ||||||||||| ||||
Sbjct 176 AGATACCATCAGTTGCAGAGGTCAAGACTGGTGAGTTGTTT-AGGGTGGAAATGGTTGAC 234
Query 257 TGTATGGGAGGTGTTGTCAAAGACA-ATGACTCTGCAAGCGATATCAAGAACGCAGACCT 315
|| | |||||||| |||||||| | ||| |||||| ||||||| |||| | ||||||
Sbjct 235 TGGACGGGAGGTGCAGTCAAAGA-AGATGGCTCTGCTGGCGATATTAAGAGCATAGACCT 293
Query 316 AACCACTACTCATCACCTAAGTGGGCCGATTAGGGTTGTGGATGAGGATGGTGTTGCAGC 375
| ||| |||| |||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 294 CTCTACTGTTCATTACCTGAGTGGGCCGATCAAAGTTGTGGATGAGGATGGTGTTGCAGC 353
Query 376 TAAGCCAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGGGTCCTCTTCCAGGAGATGA 435
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TAGGCCAGGTGATCTTCTTGCTGTTGAGATATGCAACTTGGGTCCTCTTCCAGGAGATGA 413
Query 436 ATGGGGATTCACTGGTTCGTTTGATAGAGAGAATGGCGGCGGTTTCTTGACTGACCATTT 495
|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 414 ATGGGGATTCACTGCTTCATTTGATAGAGAGAATGGCGGTGGTTTCTTGACTGACCATTT 473
Query 496 CCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATCTATGCCTACTCTCCTCAAAT 555
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 CCCTTGTGCGACCAAAGCTATTTGGTACTTTGAAGGGATTTATGCCTACTCTCCTCAAAT 533
Query 556 TCCTGGAGTACGATTTCC-GGGTTTGACACACCCAGGAGTCATTGGCACCGCGCCATCGA 614
|||||||||||||||||| ||||| |||||| |||||| |||||||||| || ||||| |
Sbjct 534 TCCTGGAGTACGATTTCCAGGGTT-GACACATCCAGGAATCATTGGCACTGCACCATCAA 592
Query 615 TGGAACTCCTGAGAATATGGAATGAAAGGGAAAGACAATTAGAAGAAAGTGGTCTCAAGT 674
|||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 593 AAGAACTCTTGAGAATATGGAATGAAAGGGAAAGACAATTAGAAGAAAAAGGTGTTGAGT 652
Query 675 CCCCAACACTATGTGAGGTTGTGCATCAACGGCCATTGGCAAACCTACCAACAGCTAAAG 734
||| |||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||
Sbjct 653 CCCTAACACTATGTGAGGTTGTGCATCAGCGGCCATTAGCAAGCCTACCAACAACTAAAG 712
Query 735 GATGCCTCCTAGGGAACATTGAAGA-AGGAACACCAGAATGGGAAAGGATTGCTAACGAG 793
|||| || ||||| || |||||||| |||| || ||||||||||||| ||||| || |||
Sbjct 713 GATGTCTACTAGGAAATATTGAAGAGAGGA-CATCAGAATGGGAAAGAATTGCAAAGGAG 771
Query 794 GCTGCGAGGACGATACCAGGAAGAGAAAACGGAGGAAACTGTGACATTAAAAACCTAAGC 853
||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 772 GCTGCTAGGACAATACCAGGAAGGGAAAATGGAGGAAACTGTGACATAAAAAACCTAAGC 831
Query 854 AGAGGCTCTAAAATATATCTTCCAGTGTTTGTAGAAGGGGCTAATCTAAGCACAGGAGAC 913
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 832 AGTGGCTCTAAAATATATCTTCCAGTGTTTGTAGAAGGAGCTAATCTAAGCACCGGTGAC 891
Query 914 ATGCATTTCTCGCAAGGTGATGGTGAGATCTCATTCTGTGGAGCCATCGAGATGAGTGGA 973
||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 892 ATGCATTTCTCACAGGGTGATGGCGAGATCTCATTCTGTGGAGCCATAGAGATGAGTGGA 951
Query 974 TTTCTAGAACTCAAGTGTGAAATCATAAGGAATGGGATGCAAGAATACCTTACGCCAATG 1033
|||||||||||||||||||||||||| || || |||||||| || |||||||| ||||||
Sbjct 952 TTTCTAGAACTCAAGTGTGAAATCATTAGAAACGGGATGCAGGAGTACCTTACACCAATG 1011
Query 1034 GGACCGACCCCGCTCCATGTAAACCCAATCTTTGAGATAGGGCCAGTTGAACCGAGATTC 1093
||||| ||| | ||||| |||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 1012 GGACCAACCACTCTCCACGTAAACCCGATCTTTGAGATAGGGCCAGTGGAACCAAGATTC 1071
Query 1094 TCAGAATGGCTTGTCTTCGAAGGTATCAGTGTCGATGAGAGCGGGAGACAACATTACCTG 1153
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1072 TCAGAGTGGCTTGTCTTCGAGGGTATCAGTGTCGATGAGAGCGGAAGACAACATTACCTA 1131
Query 1154 GATGCAACAGTTGCTTACAAACGGGCAGTTCTCAACGCCATAGACTATCTCTTCAAATTT 1213
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1132 GATGCAACAGTTGCATACAAACGAGCAGTTCTCAACGCTATAGACTATCTCTTCAAATTC 1191
Query 1214 GGTTACTCAAAAGAACAGGTGTACCTCTTGCTCTCATGTTGTCCATGTGAAGGAAGACTA 1273
|||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||| ||
Sbjct 1192 GGTTACTCAAAAGAACAGGTATATCTCTTACTCTCATGCTGTCCATGCGAAGGAAGAATA 1251
Query 1274 TCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTTGCAATACCTACTGCCATCTTT 1333
|| || ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1252 TCCGGTATAGTCGATTCTCCAAATGCCGTTGCTACACTTGCAATACCCACTGCCATCTTT 1311
Query 1334 GATCAGGATATTCGGCCAAAGACCCGAAAGGTTCCAGCAGGACCTCGGATAGTGAGGAAA 1393
|||||||||||||| |||||||||||||| |||||| ||||| |||||||||||| |||
Sbjct 1312 GATCAGGATATTCGTCCAAAGACCCGAAAAGTTCCAACAGGAGCTCGGATAGTGAAGAAG 1371
Query 1394 CCAGACGT-ACTGAAGAGCACATATGATGGAAAGCTTCCAATTACAAAGAATCCAAGTTC 1452
|||||||| | |||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1372 CCAGACGTTA-TGAAGAGCACATATGATGGAAAACTTCCAATTACAAAGAATTCAAGTTC 1430
Query 1453 TTCCTCTTAGCTTCTACAAAAA 1474
||||||||||||||||||||||
Sbjct 1431 TTCCTCTTAGCTTCTACAAAAA 1452
> AT4G37553.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT4G37550 and AT4G37560 | chr4:17644898-17649055
REVERSE LENGTH=773
Length=773
Score = 453 bits (245), Expect = 2e-126
Identities = 339/380 (89%), Gaps = 24/380 (6%)
Strand=Plus/Minus
Query 988 GTGTGAAATCATAAGGAATGGGATGCAAGAATACCTTACGCCAATGGGACCGACCCCGCT 1047
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 686 GTGTGAAATCATAAGAAATGGGATGCAAGAGTACCTTACGCCAATGGGACCTACCCCTCT 627
Query 1048 CCATGTAAACCCAATCTTTGAGATAGGGCCAGTTGAACCGAGATTCTCAGAATGGCTTGT 1107
||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct 626 CCATGTAAACCCAATCTTTGAGATAGGACCAGTGGAACCGAGGTTCTCAGAGTGGCTTGT 567
Query 1108 CTTCGAAGGTATCAGTGTCGATGAGAGCGGGAGACAACATTACCTGGATGCAACAGTTGC 1167
|||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||
Sbjct 566 CTTCGAAGGTATCAGTGTCGATGAGAGCGGAAAACAGCATTACCTAGATGCAACAGTTGC 507
Query 1168 TTACAAACGGGCAGTTCTCAACGCCATAGACTATCTCTTCAAATTTGGTTACTCAAAAGA 1227
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 506 TTACAAACGGGCAGTTCTCAACGCCATAGACTATCTTTTCAAATTTGGTTACTCAAAAGA 447
Query 1228 ACAGGT----GTA----C--CT--------CTTGC----T-CTCATGTTGTCCATGTGAA 1264
|||||| || | || ||| | | |||||||||||||||||||
Sbjct 446 ACAGGTACTTGTCTTTGCAGCTTGATGTTTCTTCCAGAATTCTCATGTTGTCCATGTGAA 387
Query 1265 GGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTTGCAATACCTACT 1324
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 386 GGAAGACTATCTGGGATAGTTGATTCTCCGAATGCCGTTGCTACACTAGCAATACCTACA 327
Query 1325 GCCATCTTTGATCAGGATAT 1344
|||||||||||||||| |||
Sbjct 326 GCCATCTTTGATCAGG-TAT 308
Score = 148 bits (80), Expect = 1e-34
Identities = 86/89 (97%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 1377 CTCGGATAGTGAGGAAACCAGACGTACTGAAGAGCACATATGATGGAAAGCTTCCAATTA 1436
||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 205 CTCGGGTTGTGAGGAAACCAGATGTACTGAAGAGCACATATGATGGAAAGCTTCCAATTA 146
Query 1437 CAAAGAATCCAAGTTCTTCCTCTTAGCTT 1465
|||||||||||||||||||||||||||||
Sbjct 145 CAAAGAATCCAAGTTCTTCCTCTTAGCTT 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74196405510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5