BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490864
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37540.1 | Symbols: LBD39 | LOB domain-containing protein 39... 1319 0.0
> AT4G37540.1 | Symbols: LBD39 | LOB domain-containing protein
39 | chr4:17639533-17640665 REVERSE LENGTH=995
Length=995
Score = 1319 bits (714), Expect = 0.0
Identities = 840/901 (93%), Gaps = 8/901 (1%)
Strand=Plus/Plus
Query 66 ttttttttttAACAAGTAGAGTTTCCCAAAATATTGGATATCACTTCTTTTTCAAATTTC 125
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 89 TTTTTGTTTTAACAAGTAGAGTTTCCCAAAATATTGGATAT-ATTTCTTTTTCAAATTTC 147
Query 126 GGaaaaaaaaTGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGCGAAACATGC 185
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 148 GGAAAAGAAATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGTGAAACATGC 207
Query 186 ATCCTTCGACCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCCATGCCACTGTC 245
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 208 ATCCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCCACGCCACCGTC 267
Query 246 TTCGTCGCTAAATTCTTTGGCCGTGCCGGTCTCATGTCTTTCATCTCCGGCGTACCCGAA 305
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||
Sbjct 268 TTCGTCGCTAAATTCTTTGGTCGTGCTGGTCTCATGTCTTTCATCTCCTCCGTACCTGAA 327
Query 306 CTCCAACGTCCAGCTTTGTTTCAGTCGTTGTTGTTTGAAGCGTGTGGGAGAACGGTGAAT 365
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CTCCAACGTCCTGCTTTGTTTCAGTCGTTGTTGTTTGAAGCGTGTGGGAGAACGGTGAAT 387
Query 366 CCAGTTAACGGAGCGGTTGGTATGTTATGGACTGGGAACTGGCACGTGTGCCAAGCGGCG 425
|| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 388 CCGGTTAACGGAGCGGTTGGTATGTTGTGGACCAGGAACTGGCACGTATGCCAAGCGGCG 447
Query 426 GTTGAGACTGTTCTTCGCGGCGGAACTTTAAGACCGTTCTCAGATCTTCTTGAATCTCCG 485
|||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 448 GTTGAGACTGTTCTTCGCGGCGGAACTTTACGACCGATATCAGATCTTCTTGAATCTCCG 507
Query 486 CCGTTAATGCTATCCTCCGATGAGTCTTCCGAGATTTGGCATCAAGACGTTTCAAGAAAC 545
|||| ||| | |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 508 TCGTTGATGATCTCCTGTGATGAGTCTTCAGAGATTTGGCATCAAGACGTTTCAAGAAAC 567
Query 546 AAAAACAACCATTGTCACTTCTCCACCTCCAGATCTAAGACGGAGATGAAAGACTCTCTG 605
||| | ||||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 568 CAAACCCACCATTGTCGCTTCTCCACCTCCAGATCCACGACGGAGATGAAAGACTCTCTG 627
Query 606 GTTAACCGGAAACGATTGAAGTCCGATTCGGATCTTGATCTCCAAATGAACGACGATTTA 665
|||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 628 GTTAACCGAAAACGATTGAAGTCCGATTCGGATCTTGATCTCCAAGTGAACCACGGTTTA 687
Query 666 ACCCTAACCGCTCAGGCTGTACCGGTTCCTTTTCTTCCTCCGTCGACGTTTTGTAAGGCG 725
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 688 ACCCTAACCGCTCCGGCTGTACCGGTTCCTTTTCTTCCTCCGTCGTCGTTTTGTAAGGTG 747
Query 726 GTTAACGGTGATCGGCCGGGAAGTCCATCGGAGGAATCTGTAACGACGTCGTGTTGGGAG 785
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 GTTAAGGGTGATCGTCCGGGAAGTCCATCGGAGGAATCTGTAACGACGTCGTGTTGGGAA 807
Query 786 AATGGTATGAGAGGAGATAACAAACAAAGAAGAAACAAAGGAGAGAAAAAGTTGTTAAAC 845
||||| |||||||||||||| ||||||| |||||||||||||||||||||||| || |||
Sbjct 808 AATGGGATGAGAGGAGATAATAAACAAAAAAGAAACAAAGGAGAGAAAAAGTTATTGAAC 867
Query 846 CTTTTTGTTTAAAACCGACGACGCAAAACACTCAAAGATTTTGAGGCTCTTTTTTAGGGT 905
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 868 CTTTTTGTTTAAAACCGACGACGCAAAACACTCAAAGATTTTGAGGCTCTCTTTT----T 923
Query 906 TATGAGTTATGAGTGGGAATGGATATTTAGTTAATTATTTT-CTCTATCGAGAAATACTG 964
|| | ||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 924 TAGG-GTTTTGAGTGGGAATGGATATTTAGTTAATGATTTTTCTCTATCGAGAAATA-TG 981
Query 965 A 965
|
Sbjct 982 A 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5