BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490867
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37520.1 | Symbols: | Peroxidase superfamily protein | chr4... 1646 0.0
AT4G37530.1 | Symbols: | Peroxidase superfamily protein | chr4... 1430 0.0
> AT4G37520.1 | Symbols: | Peroxidase superfamily protein | chr4:17631562-17633249
FORWARD LENGTH=1321
Length=1321
Score = 1646 bits (891), Expect = 0.0
Identities = 974/1015 (96%), Gaps = 2/1015 (0%)
Strand=Plus/Plus
Query 87 TGGTGAACAAAACGAAtctcttattgcttcttctctctctctttctcatcctcaacctct 146
|||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||
Sbjct 150 TGGTGAACAAAACGAATCTCTTATTGCTTCTTCTCTCTCTATGTCTCACCCTCGACCTCT 209
Query 147 cctccgctcaactccGCCGCAACTTCTACGCCGGAAGTTGTCCTAACGTCGAGCAAATCG 206
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 210 CCTCCGCACAACTCCGCCGTAACTTCTACGCCGGAAGTTGTCCTAACGTCGAACAAATCG 269
Query 207 TCAGAAACGCCGTTCAGAAAAAAGTCCAACAAACTTTCACCACCATTCCCGCCACTCTCC 266
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 270 TTAGAAACGCCGTACAGAAAAAAGTCCAACAAACTTTCACCACCATTCCCGCCACTCTAC 329
Query 267 GCCTCTATTTCCACGATTGTTTCGTCAATGGGTGTGATGCATCTGTGATGATAGCGTCGA 326
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 330 GCCTCTATTTCCATGATTGTTTCGTCAATGGGTGTGATGCATCAGTGATGATAGCGTCAA 389
Query 327 CTGATAATAATAAGGCGGAGAAGGATCATGAGGAGAATCTATCGTTGGCCGGAGATGGAT 386
| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 390 CAAATAATAATAAGGCGGAGAAGGATCATGAGGAAAATTTATCGTTGGCCGGAGATGGAT 449
Query 387 TCGACACCGTCACTAAAGCTAAAGAAGCTCTCGACGCCGTCCCAAATTGTCGTAACAAAG 446
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 450 TCGACACCGTCATTAAAGCTAAAGAAGCTCTCGATGCCGTCCCAAATTGTCGTAACAAAG 509
Query 447 TTTCTTGCGCTGATATTCTCACTATGGCCACTCGTGACGTCGTTAATCTTGCGGGTGGAC 506
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 510 TTTCATGCGCTGATATTCTCACGATGGCCACTCGTGACGTCGTTAATCTTGCGGGTGGAC 569
Query 507 CAAAATACGACGTGGAATTGGGAAGGCTGGATGGATTATCGTCAACGGCGGCTAGCGTCG 566
|| ||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||
Sbjct 570 CACAATACGACGTGGAATTGGGAAGGCTAGATGGACTATCATCAACAGCGGCTAGCGTCG 629
Query 567 GAGGGAAGTTGCCTCATCCGACCGACGATGTCAATAAACTCACTTCACTTTTCGCGAAAA 626
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 630 GAGGGAAGTTGCCGCATCCGACCGACGATGTCAATAAACTCACTTCACTCTTCGCCAAAA 689
Query 627 ACGGCCTTAGCCTTAACGACATGATCGCTCTCTCCGGGGCACACACATTAGGATTCGCGC 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 ACGGCCTTAGCCTTAACGACATGATCGCTCTCTCCGGGGCACACACATTAGGATTCGCGC 749
Query 687 ATTGCACAAAAGTATTCGATCGGATATACACTTTCAACAAGACAACTAAAGTGGATCCCA 746
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 ATTGCACAAAAGTGTTCAATCGGATATACACTTTCAACAAGACAACTAAAGTGGATCCCA 809
Query 747 CGGTTAACAAAGATTACGTGACAGAGCTAAAAGCGTCGTGTCCTCAAAACATAGATCCAA 806
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 810 CGGTTAACAAAGATTACGTGACAGAGCTAAAAGCGTCGTGTCCTCGAAACATAGATCCAA 869
Query 807 GAGTGGCTATAAACATGGACCCAACAACACCAAGACAATTCGACAACGTTTACTACAAAA 866
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GAGTGGCTATTAACATGGACCCAACAACACCAAGACAATTCGACAACGTTTACTACAAAA 929
Query 867 ACTTGCAACAAGGGAAAGGATTGTTCACGTCTGATCAAGTCTTATTCACAGATCGTCGGT 926
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 930 ACTTGCAACAAGGGAAAGGATTGTTCACGTCGGATCAAGTCTTATTCACGGATCGTCGGT 989
Query 927 CAAAGCCAACCGTTGACTTATGGGCTAGTAATGGACAGTTGTTTAATCAAGCTTTTATTA 986
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 990 CAAAGCCAACCGTTGACTTATGGGCTAATAATGGACAGTTGTTTAATCAAGCTTTTATTA 1049
Query 987 ACTCGATGATCAAGCTTGGTCGTGTTGGTGTTAAAACCGGTAGTAATGGTAATATCCGTC 1046
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1050 ACTCGATGATCAAGCTTGGTCGTGTTGGTGTTAAAACTGGTAGTAATGGTAATATCCGTC 1109
Query 1047 GTGATTGTGGAGCTTTTAATTAATTTGAATATATCTGGT-TTAGATTTTGTTTAT 1100
||||||||||||||||||||| |||| |||||||||| | |||||||||||||||
Sbjct 1110 GTGATTGTGGAGCTTTTAATTGATTTAAATATATCTG-TATTAGATTTTGTTTAT 1163
> AT4G37530.1 | Symbols: | Peroxidase superfamily protein | chr4:17634784-17636288
FORWARD LENGTH=1198
Length=1198
Score = 1430 bits (774), Expect = 0.0
Identities = 939/1018 (92%), Gaps = 14/1018 (1%)
Strand=Plus/Plus
Query 90 TGAACAAAACGAAtctcttattgcttcttctctctctctttctcatcc-tcaacctctcc 148
||||||||||||||||||| |||||| |||||||||| |||||| || |||||||||||
Sbjct 13 TGAACAAAACGAATCTCTTGTTGCTTATTCTCTCTCTTTTTCTC-GCCATCAACCTCTCC 71
Query 149 tccgctcaactccGCCGCAACTTCTACGCCGGAAGTTGTCCTAACGTCGAGCAAATCGTC 208
||||||||||||||| || ||||||||||||||| |||||| ||||||||||||||||||
Sbjct 72 TCCGCTCAACTCCGCGGCGACTTCTACGCCGGAACTTGTCCGAACGTCGAGCAAATCGTC 131
Query 209 AGAAACGCCGTTCAGAAAAAAGTCCAACAAACTTTCACCACCATTCCCGCCACTCTCCGC 268
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 132 AGAAACGCCGTACAGAAAAAAATCCAACAAACTTTCACCACCATTCCCGCCACTCTACGC 191
Query 269 CTCTATTTCCACGATTGTTTCGTCAATGGGTGTGATGCATCTGTGATGATAGCGTCGACT 328
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 192 CTCTATTTCCATGATTGTTTCGTCAATGGATGTGATGCATCAGTGATGATAGCGTCGACA 251
Query 329 GATAATAATAAGGCGGAGAAGGATCATGAGGAGAATCTATCGTTGGCCGGAGATGGATTC 388
||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 252 AATACTAATAAGGCGGAGAAGGATCATGAGGATAATTTATCGTTGGCCGGAGATGGATTC 311
Query 389 GACACCGTCACTAAAGCTAAAGAAGCTCTCGACGCCGTCCCAAATTGTCGTAACAAAGTT 448
|||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 312 GACACCGTCATTAAAGCTAAAGAAGCTGTTGACGCCGTCCCAAATTGTCGTAACAAAGTT 371
Query 449 TCTTGCGCTGATATTCTCACTATGGCCACTCGTGACGTCGTTAATCTTGCGGGTGGACCA 508
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 372 TCTTGCGCTGATATTCTCACGATGGCCACTCGTGACGTCGTTAATCTTGCGGGTGGACCA 431
Query 509 AAATACGACGTGGAATTGGGAAGGCTG-GATGGA-TTATCGTCAACGGCGGCTAGCGTCG 566
|||||| ||| ||||||||||||| | |||||| || ||||| |||| ||||||||
Sbjct 432 CAATACGCCGTAGAATTGGGAAGGC-GAGATGGACTT-TCGTCGTCGGCTTCTAGCGTCA 489
Query 567 GAGGGAAGTTGCCTC-ATCCGACCGACGATGTCAATAAACTCACTTCACTTTTCGCGA-A 624
||||||| | || | | |||||| ||| |||| |||||| | |||||||||| | |
Sbjct 490 CAGGGAAGCTACC-CAAACCGACCTTTGATCTCAACCAACTCAATGCACTTTTCGC-AGA 547
Query 625 AAACGGCCTTAGCCTTAACGACATGATCGCTCTCTCCGGGGCACACACATTAGGATTCGC 684
|||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AAACGGTCTTAGCCCTAATGACATGATCGCTCTCTCCGGGGCACACACATTAGGATTCGC 607
Query 685 GCATTGCACAAAAGTATTCGATCGGATATACACTTTCAACAAGACAACTAAAGTGGATCC 744
||||||||||||||| ||| ||||| |||||| |||||||||||||| ||| ||||||||
Sbjct 608 GCATTGCACAAAAGTTTTCAATCGGCTATACAATTTCAACAAGACAAATAACGTGGATCC 667
Query 745 CACGGTTAACAAAGATTACGTGACAGAGCTAAAAGCGTCGTGTCCTCAAAACATAGATCC 804
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CACGATTAACAAAGATTACGTGACAGAGCTAAAAGCGTCGTGTCCTCAAAACATAGATCC 727
Query 805 AAGAGTGGCTATAAACATGGA-CCCAACAACACCAAGACAATTCGACAACGTTTACTACA 863
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 728 AAGAGTGGCTATTAACATGGATCCCAA-TACACCAAGACAATTCGACAACGTTTACTACA 786
Query 864 AAAACTTGCAACAAGGGAAAGGATTGTTCACGTCTGATCAAGTCTTATTCACAGATCGTC 923
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 787 AAAACTTGCAACAAGGGAAAGGATTGTTCACGTCTGATCAAGTCTTATTCACCGATAGTC 846
Query 924 GGTCAAAGCCAACCGTTGACTTATGGGCTAGTAATGGACAGTTGTTTAATCAAGCTTTTA 983
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 847 GGTCAAAGCCAACCGTTGACTTATGGGCTAATAATGGACAGTTGTTTAATCAAGCTTTTA 906
Query 984 TTAACTCGATGATCAAGCTTGGTCGTGTTGGTGTTAAAACCGGTAGTAATGGTAATATCC 1043
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 907 TTAGCTCGATGATCAAGCTTGGTCGTGTTGGTGTTAAAACTGGTAGTAATGGTAATATTC 966
Query 1044 GTCGTGATTGTGGAGCTTTTAATTAATTTGAATATATCTGGTTTA-GATTTTGTTTAT 1100
|||||||||| |||||||| ||||||||| |||||||||| |||| ||| ||||||||
Sbjct 967 GTCGTGATTGCGGAGCTTTCAATTAATTTAAATATATCTG-TTTAAGATATTGTTTAT 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5