BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490868
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37510.1 | Symbols: | Ribonuclease III family protein | chr... 3083 0.0
AT2G48121.2 | Symbols: | LOCATED IN: mitochondrion; BEST Arabi... 697 0.0
> AT4G37510.1 | Symbols: | Ribonuclease III family protein | chr4:17626104-17628947
REVERSE LENGTH=1862
Length=1862
Score = 3083 bits (1669), Expect = 0.0
Identities = 1801/1864 (97%), Gaps = 12/1864 (1%)
Strand=Plus/Plus
Query 1 CTGTTGCAAAAATCGTGTC-TTT--GTGTTCTCGAGTCGAGTTTGATGATTTGGTTTCTT 57
||| ||||||||||||||| ||| ||||||||||||||| || |||||||| | |||||
Sbjct 1 CTGCTGCAAAAATCGTGTCTTTTGCGTGTTCTCGAGTCGAATTGGATGATTT-GATTCTT 59
Query 58 AATTTTTGTTTG--A-TAATAGTCTAAAGAAGCAATGGAGCTTTGTTCTTCATCTTCATC 114
|||||||||||| | ||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 AATTTTTGTTTGATAGTAACAGTCTAAAGAAGCAATGGAGCTTTGTTCTTCATCTCCATC 119
Query 115 ATCTTCTCTCCTTCGCATTTGTTCATCTTCAGCACCAGAAATCTCATTTTCTTCTTCAAT 174
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTCTTCTCTCCTTCGCATTTGTTCATCTTCAGCACCAGAAATCTCATTTTCATCTTCAAT 179
Query 175 TTCTCAGTTCCCATCTAAAACCCAATCGATTCTCACAAAACCCAGATTCCAAAATCTCCG 234
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 TTCTCAGTTCCCATCTAAAACCCAATCGATTCTCACAAAATCCAGATTCCAAAATCTCCG 239
Query 235 AATTTGCGCTTCCGTGGCGGCGGAGACTCAAGGTCTTCCACGAGACAGTCCTCAACGTCT 294
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 AATTTGCGCTTCCGTGACGGCGGAGACTCAAGGTCTTCCACGAGACAGCCCTCAACGTCT 299
Query 295 CCTCAAGGAGCTTGCGCAGCGTAAAACAGCGACAGGACCGAAGAAAAAGGTTCCTCCGAA 354
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 CCTCAAAGAGCTAGCACAGCGTAAAACAGCGACAGGACCGAAGAAAAAGGTTCCTCCTAA 359
Query 355 ACGATTCATCTTAAGACCACCATTAGATGATAAGAAATTAGCTGAGAGATTCCTCAATAG 414
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 ACGATTCATCTTAAGGCCACCATTAGACGATAAGAAATTAGCTGAGAGATTCCTCAATAG 419
Query 415 TCCACAATTGTCTCTCAAGTCGTTTCCTTTACTCAGCTCTTGTCTTCCATCGTCAAAGCT 474
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 TCCACAATTGTCTCTGAAGTCGTTTCCTTTACTTAGCTCTTGTCTTCCATCGTCAAAGCT 479
Query 475 TAACAACGCTGATAAAACATGGATCGATGAGTATCTTCTTGAAGTTAAACAAGCTTTAGG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAACAACGCTGATAAAACATGGATCGATGAGTATCTTCTTGAAGTTAAACAAGCTTTAGG 539
Query 535 GTATTCTCTGGAGCCTTCAGAGAGTTTAGGAGATGATAATCCAGCGAAACACTTTGATAC 594
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GTATTCTCTGGAACCTTCAGAGAGTTTAGGAGATGATAATCCGGCGAAACACTTTGATAC 599
Query 595 GTTGCTCTATCTTGCGTTCCAGCATCCGTCTTGTGATAGGGCACGTGCGAGGCATGTGAA 654
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 GTTGCTCTATCTTGCTTTCCAGCATCCGTCTTGTGATAGAGCACGTGCGAGGCATGTGAA 659
Query 655 GAATGGGCACTCGAGGCTTTGGTTTCTGGGTCAGTATGTGCTTGAGCTTGCTCTTACGGA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAATGGGCACTCGAGGCTTTGGTTTCTGGGTCAGTATGTGCTTGAGCTTGCTCTTACGGA 719
Query 715 GTTTTTCTTGCAGAGGTATCCGAGGGAATCTCCTGGACCTATGAGGGAGAGAGTGTTTGC 774
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 GTTTTTCTTGCAGAGGTATCCGAGGGAATCTCCGGGACCTATGAGGGAGAGAGTGTTTGC 779
Query 775 TTTGATTGGGAAGAGGTATCTCCCCAAATGGATTAAAGCAGCGAGCTTGCAAAATCTCAT 834
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 TTTGATTGGGAAGAGGTATCTCCCGAAATGGATTAAAGCAGCGAGCTTGCAAAATCTCAT 839
Query 835 CTTTCCTTATGATGATATGGATAAGTTGATTAGAAAAGAGCGTGAGCCACCGGTTAAATC 894
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 CTTTCCTTATGATGATATGGATAAGTTGATTAGGAAAGAGCGTGAGCCACCGGTTAAATC 899
Query 895 TGTGTTCTGGGCTTTGTTTGGTGCCATCTATCTATGCTATGGGATGCCGGAAGTGTATCG 954
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 900 TGTGTTCTGGGCTTTGTTTGGTGCCATCTATCTATGTTTTGGGATGCCGGAAGTGTATCG 959
Query 955 TGTACTTTTTGAGGTGTTTGGGATGGATCCAGATGCTGATGAGTGTCAGCCTCGAAGCAG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGTACTTTTTGAGGTGTTTGGGATGGATCCAGATGCTGATGAGTGTCAGCCTCGAAGCAG 1019
Query 1015 GAGACAGCTCGAGGATGTAGATTATGTTTCTGTTGAATTTGAAGGCAAAAAGCTAGGTTG 1074
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 GAGACAGCTCGAGGATGTAGATTATGTTTCTGTTGAATTTGAAGGGAAAAAGCTAGGTTG 1079
Query 1075 GCAAGATATTGCTACTTACAAGCCTCCTGAAGATGCTTTATTCGCACACCCAAGGCTATT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 GCAAGATATTGCTACTTACAAGCCTCCTGAAGATGCTTTATTCGCACACCCTAGGCTATT 1139
Query 1135 CAGAGCTTGTGTTCCTCCGGGAATGCATCGTTTCAGAGGGAACATATGGGATTTTGACAG 1194
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CAGAGCTTGTGTTCCACCGGGAATGCATCGTTTCAGAGGGAACATATGGGATTTTGACAG 1199
Query 1195 CAAACCAAAAGTTATGCAGACCCTCGGATACCCCTTACCGATGAATGATAGAATCAAGGA 1254
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1200 CAAACCAAAAGTTATGCAGACCCTCGGATACCCTTTAACGATGAATGATAGAATCAAGGA 1259
Query 1255 GATAACTGAAGCAAGAAACATCGAACTTGGACTCGGGTTACAGCTCTGCTTCTTGCATCC 1314
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 GATAACTGAAGCAAGAAACATCGAACTTGGACTCGGTTTACAGCTCTGCTTCTTGCATCC 1319
Query 1315 TTCGAAGCATAAGTTTGAACACCCACGGTTTTGTTTTGAGCGGCTGGAATACGTAGGACA 1374
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1320 TTCAAAGCATAAGTTTGAACACCCGCGGTTTTGTTTTGAGCGGCTGGAATATGTAGGACA 1379
Query 1375 GAAGATACAGGACATAGCAATGGCTGAACGTTTGTTAATGAAGCACTTGGACGCACCAGG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GAAGATACAGGACATAGCAATGGCTGAACGTTTGTTAATGAAGCACTTGGACGCACCAGG 1439
Query 1435 GAAGTGGTTGCAAGAGAAGCATCGGCGTCTATTAATGAACAAATTCTGCGGGCGGTATCT 1494
|||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 1440 GAAGTGGTTGCAAGAGAAGCATAGACGTCTATTAATGAACAAATTCTGCGGCCGGTATCT 1499
Query 1495 GAGAGAAAAACGTCTTCACAACTTTATAATATACTCAGAGGAGGTTCATGATCGGTATGA 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TAGAGAAAAACGTCTTCACAACTTTATAATATACTCAGAGGAGGTTCATGATCGGTATGA 1559
Query 1555 ACATAACCGGAGACTTAGGAATCCGGCGACAACCGCTGTTCAACAAGCCATTCACGGCCT 1614
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1560 ACATAACCGGAGACTTAGGAATCCGGCGACAACCGCTGTCCAACAAGCCATTCACGGCCT 1619
Query 1615 CGCCTACACCATCTACGGGAAACCCGATGTTCGGCGGCTCATGTTTGAGGTTTTCGACTT 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CGCCTACACCATCTACGGGAAACCCGATGTTCGGCGGCTCATGTTTGAGGTTTTCGACTT 1679
Query 1675 CGAACAAATCCAACCTAAAGCTGTGTGAAAATCAGA-G-TGTCTCTCTCATTTGTCTTAA 1732
|||||||||||||||||||||||| |||||||| || | |||||||||||||||||| ||
Sbjct 1680 CGAACAAATCCAACCTAAAGCTGTCTGAAAATC-GAAGCTGTCTCTCTCATTTGTCT-AA 1737
Query 1733 TGTCTTTTAGTATACTACTGGATATGATTTATGTAGTTAAATACTTCATTACCTTTTGGT 1792
||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||| |||
Sbjct 1738 TGTCTTTTAGTATACTACTGGGTTTGATTTATGTAGTTAAATGCTTAATTACCTTT-GGT 1796
Query 1793 GAAATGTTGAAAACTTGAAACTAGCAAAATGAGCTTCATAAGTATAATCTCAGGTTCATC 1852
|||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1797 GAAAAGTTGAAAACTTTAAACTAGCAAAATGAGCTTCATCAGTATAATCTTAGGTTCATC 1856
Query 1853 AGTT 1856
||||
Sbjct 1857 AGTT 1860
> AT2G48121.2 | Symbols: | LOCATED IN: mitochondrion; BEST Arabidopsis
thaliana protein match is: Ribonuclease III family
protein (TAIR:AT4G37510.1). | chr2:19681817-19682391 FORWARD
LENGTH=479
Length=479
Score = 697 bits (377), Expect = 0.0
Identities = 444/473 (94%), Gaps = 18/473 (4%)
Strand=Plus/Plus
Query 1294 ACAGCTCTGCTTCTTGCATCCTTCGAAGCATAAGTTTGAACACCCACGGTTTTGTTTTGA 1353
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 23 ACAGCTCTGCTTCTTGCATCCTTCAAAGCATAAGTTTGAACACCCGCGGTTTTGTTTTGA 82
Query 1354 GCGGCTGGAATACGTAGGACAGAAGATACAGGACATAGCAATGGCTGAACGTTTGTTAAT 1413
|||||||||||| ||||||||||||||||||||||||||||||||||||| | | |
Sbjct 83 GCGGCTGGAATATGTAGGACAGAAGATACAGGACATAGCAATGGCTGAAC----G-T--T 135
Query 1414 GAAGCACTTGGACGCACCAGGGAAGTGGTTGCAAGAGAAGCATCGGCGTCTATTAATGAA 1473
|||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 136 -------TTGGACGCACCAGGGAAGTGGTTGCAAGAGAAGCATAGATGTCTATTAATGAA 188
Query 1474 CAAATTCTGCGGGCGGTATCTGAGAGAAAAACGTCTTCACAACTTTATAATATACTCAGA 1533
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 189 CAAATTCTGCGGCCGGTATCTTAGAGAAAAACGTCTTCACAACTTTATAATATACTCAGA 248
Query 1534 GGAGGTTCATGATCGGTATGAACATAACCGGAGACTTAGGAATCCGGCGACAACCGCTGT 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GGAGGTTCATGATCGGTATGAACATAACCGGAGACTTAGGAATCCGGCGACAACCGCTGT 308
Query 1594 TCAACAAGCCATTCACGGCCTCGCCTACACCATCTACGGGAAACCCGATGTTCGGCGGCT 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCAACAAGCCATTCACGGCCTCGCCTACACCATCTACGGGAAACCCGATGTTCGGCGGCT 368
Query 1654 CATGTTTGAGGTTTTCGACTTCGAACAAATCCAACCTAAAGCTGTGTGAAAATCAGA-G- 1711
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 369 CATGTTTGAGGTTTTCGACTTCGAACAAATCCAACCTAAAGCTGTCTGAAAATC-GAAGC 427
Query 1712 TGTCTCTCTCATTTGTCTTAATGTCTTTTAGTATACTACTGGATATGATTTAT 1764
|||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 428 TGTCTCTCTCATTTGTCT-AATGTCTTTTAGTATACTACTGGGTTTGATTTAT 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91866997350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5