BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490869
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37490.1 | Symbols: CYC1, CYCB1;1, CYCB1 | CYCLIN B1;1 | chr... 2338 0.0
> AT4G37490.1 | Symbols: CYC1, CYCB1;1, CYCB1 | CYCLIN B1;1 | chr4:17621886-17624285
REVERSE LENGTH=1607
Length=1607
Score = 2338 bits (1266), Expect = 0.0
Identities = 1473/1571 (94%), Gaps = 21/1571 (1%)
Strand=Plus/Plus
Query 1 TTAGTCTTTTTCTACTACAAACCTGAGATTTTTAGTCTGAGAGAGAAAGAGAAGATAACA 60
|||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||
Sbjct 16 TTAGACTTTTTCTACTACAAACCTGAGA-TTTTAGTCT--GAGAGAAAGAGAAGAGAACA 72
Query 61 CAAACAAGATGATGACTTCTCGTTCGCTTGTTCCTCAACAATCTACCGAAGATGATGTTG 120
| ||||||||||||||||||||| |||||||||||||||| | || ||||||||||
Sbjct 73 C---TAAGATGATGACTTCTCGTTCGATTGTTCCTCAACAATCCA-CG--GATGATGTTG 126
Query 121 TTGTGGTAGATGGCAAAAACGTTGCGAAAGGAAGAAACCGTCAAGTTCTTGGTGATATAG 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 127 TTGTGGTAGATGGCAAAAACGTAGCGAAAGGAAGAAACCGTCAAGTTCTTGGTGATATAG 186
Query 181 GTAATGTTGTTCGAGGAAATTACCCAAAGAACAACGAACCGGCAAAGATCAATCATCGTC 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 187 GTAATGTTGTTCGAGGAAATTACCCAAAGAACAACGAACCGGAAAAGATCAATCATCGTC 246
Query 241 CTCGTACACGCTCTCAAAATGCCACACTTCTTGTGGAGGATAATCTCAAAAAACCTGTAG 300
|||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 247 CTCGTACACGATCTCAAAATCCCACGCTTCTTGTGGAGGATAATCTCAAAAAACCTGTAG 306
Query 301 TCAAGAGAATCGCAGTACCAAAGCCAAAGAAAGTAGCTGGGAAATCAAAGGTTA-TAGAA 359
||||||||| ||||||||||||||| |||||||| ||||||||| ||||||| | ||||
Sbjct 307 TCAAGAGAAACGCAGTACCAAAGCCGAAGAAAGTGGCTGGGAAACCAAAGGT-AGTAGAC 365
Query 360 GTGATTGAGATAAGTTCAGACAGTGATGAAGAACTTGGTATAGTTGCTGTTCGAGAGAAA 419
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 366 GTGATTGAGATAAGTTCAGACAGTGATGAAGAACTTGGTTTAGTTGCTGCTCGAGAGAAG 425
Query 420 AAGGCTACTAAGAAGAAAGCAACCACTTACACATCTGTTCTTACCGCTAGAAGCAAGGCT 479
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 426 AAGGCTACTAAGAAGAAAGCGACCACTTACACATCTGTTCTTACTGCTAGAAGCAAGGCT 485
Query 480 GCTTGTGGTTTAGAGAAGAAACAGAAAGAAAAGATTGTTGATATCGATTCTGCTGATGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GCTTGTGGTTTAGAGAAGAAACAGAAAGAAAAGATTGTTGATATCGATTCTGCTGATGTT 545
Query 540 AAGAATGACCTTGCAGCTGTGGAATATGTGGAAGATATCTACAGTTTCTACAAGTCTGTT 599
|||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 546 GAGAATGACCTCGCAGCTGTGGAATATGTGGAAGATATTTACAGTTTTTACAAGTCTGTT 605
Query 600 GAGAGTGAATGGAGGCCACGCGATTACATGGGATCTCAGCCTGAGATTAATGAAAAGATG 659
|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 606 GAGAGTGAATGGAGGCCACGAGATTACATGGCATCTCAGCCTGATATTAATGAAAAGATG 665
Query 660 AGATTGATTCTGGTGGAGTGGTTGATAGATGTGCATGTCAAATTCGAGCTAAACCCGGAA 719
||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 666 AGACTGATCCTGGTGGAGTGGTTGATTGATGTGCATGTCCGATTCGAGCTAAACCCGGAA 725
Query 720 ACTTTTTACCTCACTGTGAACATTCTGGATCGCTTCTTGTCGGTGAAGCCAGTGCCTCGA 779
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 726 ACATTTTACCTCACTGTTAACATTCTGGATCGGTTCTTGTCGGTTAAGCCAGTGCCTCGA 785
Query 780 AAAGAATTGCAG-TTAGTTGGTCTCAGTGCTCTTCTCATGTCATCCAAGTACGAAGAAAT 838
|||||| ||||| || |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 786 AAAGAACTGCAGCTT-GTTGGTCTCAGTGCTCTTCTCATGTCGGCCAAGTATGAAGAAAT 844
Query 839 TTGGCCACCACAGGTGGAAGATCTAGCTGATATTGCAGACCATGCATACAGTCACAAACA 898
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 845 TTGGCCACCACAGGTGGAGGATCTAGTTGATATTGCAGACCATGCATACAGTCACAAACA 904
Query 899 GATTCTGGTGATGGAGAAGACAATACTGTCTGCACTTGAGTGGTACTTGACAGTTCCGAC 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 905 GATTCTGGTGATGGAGAAGACAATACTGTCTACACTTGAGTGGTACTTGACAGTTCCGAC 964
Query 959 TCATTATGTCTTCCTGGCTCGTTTCATCAAAGCTTCCATTGCAGACGAAAAGATGGAGAA 1018
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TCATTATGTCTTCCTAGCTCGTTTCATCAAAGCTTCCATTGCAGACGAAAAGATGGAGAA 1024
Query 1019 TATGGTGCACTATTTGGCAGAGTTAGGTGTAATGCATTACGATACAATGATAATGTTTAG 1078
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1025 TATGGTGCACTATTTGGCTGAGTTAGGCGTAATGCATTACGATACGATGATAATGTTCAG 1084
Query 1079 TCCATCTATGGTAGCTGCTTCTGCAATCTACGCAGCAAGATCTTCTCTTCGCCAAGTTCC 1138
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1085 TCCATCAATGGTAGCTGCTTCTGCAATCTACGCAGCAAGATCTTCTCTCCGCCAAGTTCC 1144
Query 1139 CATTTGGACCAACACTCTCAAGCATCACACTGGCTATTCCGAGACCCAGCTCATGGACTG 1198
||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1145 CATATGGACCAGCACTCTCAAGCATCACACTGGCTATTCTGAGACTCAGCTCATGGACTG 1204
Query 1199 TGCAAAGCTGTTGGCGTATCAGCAATGGAAACAACAACAAGAAGGGAGTGAGAGTAGTAC 1258
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||
Sbjct 1205 TGCAAAGCTGTTGGCGTATCAGCAATGGAAGCAACAAGAAGAAGGGAGTGAGAGCAGTAC 1264
Query 1259 TACTACTAAGGGAGCTTTACGAAAGAAATACTCCAAGGATGAACGCTTCGCTGTGGCTTT 1318
|| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1265 TA--A----GGGAGCTTTACGAAAGAAATACTCCAAGGACGAACGCTTCGCTGTGGCTTT 1318
Query 1319 GATCCCTCCGGCCAAAGCTTTGTTGACCGGAACTGAATCTGCCTAGGAGCTGGGAGCCTT 1378
|||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||
Sbjct 1319 GATCCCTCCGGCCAAAGCTTTGTTGACCGGAACTGAATCTGCTTAGGAGTTAGGACCCTT 1378
Query 1379 TAAGAAGACGGAGAAGCTGAAGAACCAAGTCTAGTTTCATTTTCCTTCTGAAAATCAAGT 1438
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1379 TAAGAAGACGAAGAAGCTGAAGAACCAAGCCTAGTTTCATTTTCCTTCTGAAAATCAAGT 1438
Query 1439 CAAGTTTCATTAGATAATAATATTTTGTACAAGTCTAATGAGTCGCTTTGAAACCAAGTT 1498
| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct 1439 CTAGTTTCATTAGATAATGGTATTTTGAACAAGTCTAATGAGTCGCTTTGAAACCTAGTC 1498
Query 1499 CTTTAGCATAATTTATTCCCCAACACAAAGCATATCTTGTGAGAAGTCAGTTTCTTCTGA 1558
||||||||| ||| |||||| ||||| ||||||||||| |||||||||||||||| ||
Sbjct 1499 CTTTAGCATGATTCATTCCCAAACACT--GCATATCTTGTAAGAAGTCAGTTTCTTCCGA 1556
Query 1559 GTAGTTTAATT 1569
| |||||||||
Sbjct 1557 GAAGTTTAATT 1567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5