BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490872
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37450.1 | Symbols: AGP18, ATAGP18 | arabinogalactan protein... 1051 0.0
> AT4G37450.1 | Symbols: AGP18, ATAGP18 | arabinogalactan protein
18 | chr4:17605758-17606755 REVERSE LENGTH=819
Length=819
Score = 1051 bits (569), Expect = 0.0
Identities = 738/814 (91%), Gaps = 34/814 (4%)
Strand=Plus/Plus
Query 1 ATTATGGATCACAAGTTCCTCCTAACAGTTACATTGATCTGCATTGTCGTCGCCGGTGTC 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 ATTATGGATCGCAATTTCCTCCTAACAGTTACATTGATCTGCATTGTCGTCGCCGGTGTC 78
Query 61 GGTGGCCAATCTCCGATCACATCTCCGACCAAATCTCCCACCACTCCTTCTGCTCCAACT 120
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 79 GGTGGCCAATCTCCTATCTCTTCTCCGACCAAATCTCCCACCACTCCTTCTGCTCCAACT 138
Query 121 ACTTCCCCTACTAAATCCCCCGCCGTTACTTCTCCCAC-AGCTGCTCCTGCGAAACCTCC 179
|||||||||||||||||||||||||||||||||||||| | | ||||| |||||| ||||
Sbjct 139 ACTTCCCCTACTAAATCCCCCGCCGTTACTTCTCCCACTA-CGGCTCCGGCGAAAACTCC 197
Query 180 GGCTTCTAT-AGCTTCTTCACCTGTAGAATCACCGAAATCTCCGGCTCCTGTT----A-- 232
|| || | ||||||||||| || || ||||| |||||||||||||||||| |
Sbjct 198 AACTGCT-TCGGCTTCTTCACCGGTTGAGTCACCAAAATCTCCGGCTCCTGTTAGCGAGT 256
Query 233 -G-------C-CCGACACCTGTTCCAGAGAGCTCTCCTCCGGCTCCTACACCAAAGGCTT 283
| | ||||||||||||||||||||||||||||||| |||| |||||| || ||
Sbjct 257 CGTCTCCACCACCGACACCTGTTCCAGAGAGCTCTCCTCCGGTTCCTGCACCAATGGTTT 316
Query 284 CTTCTCCGGTGAGCTCCCCACCGGTTCCAGCACCAGTAGCTGATTCTCCTCCAGCTCCGG 343
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CTTCTCCAGTGAGCTCTCCACCGGTTCCAGCACCAGTAGCTGATTCTCCTCCAGCTCCGG 376
Query 344 TAGCTGCTCCGGTCGCTGATGTACCGGCTCCTGCTCCAAGCAAGCATAAGAAGGCTACAA 403
|||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 377 TAGCCGCTCCGGTTGCTGATGTACCGGCTCCTGCTCCAAGCAAGCATAAGAAGACTACAA 436
Query 404 AGAAATCGAAAAAGCATCAAGCTGCACCGGCTCCGGCTCCAGAACTTCTCAGTCCACCTG 463
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 437 AGAAATCGAAAAAGCATCAAGCTGCACCTGCTCCGGCTCCGGAACTTCTCGGTCCACCTG 496
Query 464 CACCACCGGCTGAATCTCCCGGACCTAACTCCGACGCTTTTTCTCCCGGCCCTTCCACAT 523
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 497 CACCACCGACTGAATCTCCCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCC---- 552
Query 524 CCGCCGACGATCAGAGCGGAGCAGAGAGCACAAAGGTGTCGAGGAATGTGGCGGTGGGAG 583
|||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||
Sbjct 553 --GCCGACGATCAGAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAG 610
Query 584 CGGTTGCAACCGCGTGGGCCGTTCTCGTTTTGGCATTCTAAATT-T--ATCATTTCACCC 640
||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 611 CGGTTGCAACCGCATGGGCCGTTCTCGTTATGGCATTCTAAATTATTTATCATTTCACCT 670
Query 641 CTAA-AtttttttagtttttatctttttGACCCTACCATTGTCTCTTTCtttacgaattt 699
|| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 671 CTGATATTTTTT-AGTTTTTATATTTTTGACCCTACCATTGTCTCTTTCTTTACGAATTT 729
Query 700 ggtattgagtattattatttaattgattatacaatttcttttcttttattttatttatat 759
|||| ||||||||||| | ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 730 GGTAATGAGTATTATT-T--AATTGATTATACAGTTTGTTTTCTTTTATTTTATTTATAT 786
Query 760 GGAAATAATAAGAAATTCATATCTGTCAGTGATG 793
|||||||||||||| |||||||||||||||||||
Sbjct 787 GGAAATAATAAGAA-TTCATATCTGTCAGTGATG 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5