BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490873

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37445.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   880    0.0  


> AT4G37445.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Calcium-binding EF hand family protein (TAIR:AT1G64850.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr4:17604094-17604933 REVERSE LENGTH=551
Length=551

 Score =  880 bits (476),  Expect = 0.0
 Identities = 501/513 (98%), Gaps = 2/513 (0%)
 Strand=Plus/Plus

Query  1    TAACTTCTAGACAATATGGG-AGGTTCAATGGGCTTTCTCGGAAAAGGGGTACCACCGAC  59
            |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  1    TAACTTCTAGACAATATGGGTA-GTTCAATGGGCTTTCTCGGAAAAGGGGTACCACCGAC  59

Query  60   GCAGATGATGAATATGGTAATGGGTTCACTCTACAAACAATTTACCCAAAAAGCTATCAA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GCAGATGATGAATATGGTAATGGGTTCACTCTACAAACAATTTACCCAAAAAGCTATCAA  119

Query  120  CAGCTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAACAACTTCAACTCGGCTTT  179
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAACAACTTCAACTCGGCTTT  179

Query  180  ACCAGGCAGACACTTCGATTTCCCGACCCCGGACCAAATAAAGGCTTGTTTCGCGCGGTG  239
            ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct  180  ACCAGGCAGGCACTTCGATTTCCCAACCCCGGACCAAATAAAGGTTTGTTTCGCGCGGTG  239

Query  240  GAAGGAAGCGAAAGATGAAGAAGAGAAGAAAAAATTGTTCATAGAGTTCATGTCAAAGAG  299
            ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct  240  GAAGGAAGCGAAAGACGAAGAAGAGAAGAAAAAATTGTTCATTGAGTTCATGTCAAAGAG  299

Query  300  CGTGAAGCCAAGTAAACTCGATGATGTCACTATGATCACCGGAATAGTGTCTCCACCGGC  359
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  300  CGTGAAGCCAAGTAAACTCGATGATGTCACTATGATCACCGGAATAGTATCTCCACCGGC  359

Query  360  GGCAATGGCGGCTAAGAGAGCAGGAGAGAATGTTCCTCAGTTAAAATTAATCAAACTCAT  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  360  GGCAATGGCGGCTAAGAGAGCAGGAGAGAATGTTCCTCAGTTAAAATTAATCAAACTTAT  419

Query  420  ACCTGATGTTATATTCGTCCCTACGGTCACCATTTTAGCCATTGTCTCGGCCAAACTCTC  479
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  420  ACCTGATGTTATATTCGTCCCTACGGTCACCATTTTAGCCATTGTCTCTGCCAAACTCTC  479

Query  480  TAGACGAATGTATTTGAAATAATGTTTTAACTA  512
            ||||||||||||||||||||| |||||||||||
Sbjct  480  TAGACGAATGTATTTGAAATAGTGTTTTAACTA  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24464029589


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5