BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490875
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37440.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1903 0.0
> AT4G37440.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G50040.1);
Has 220 Blast hits to 205 proteins in 55 species: Archae -
0; Bacteria - 15; Metazoa - 50; Fungi - 11; Plants - 76; Viruses
- 3; Other Eukaryotes - 65 (source: NCBI BLink). | chr4:17601222-17604086
FORWARD LENGTH=1828
Length=1828
Score = 1903 bits (1030), Expect = 0.0
Identities = 1390/1557 (89%), Gaps = 52/1557 (3%)
Strand=Plus/Plus
Query 1 AAAAGCCTCGACCACCTCACCGATAATGGTGGCTATGAGATCTCCGTCTTTTCTCCGTCG 60
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAAGCCTCGACCACCT-AACGATAATGGTGGCTATGAGATCTCCGTCTTTTCTCCGTCG 60
Query 61 TGTTTCTCACCGCCGATTATAAAATCCTTCTCTACTGTCATCTCCTTGCCGGAAACAGCG 120
||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||| |||
Sbjct 61 TGTTTCTCACCGCCGATTATAAAATACTTATCTACTACCATCTCCTTGTCGGAAACGGCG 120
Query 121 AGCTATTCGTCCATTA-GGATTT-A-TGTCAATTCGACGTATACTTGAGAATTTGGTATG 177
||||| ||| |||| || ||| | || || || || | || | |||||||||
Sbjct 121 AGCTA--AGTCGATTAGGGTTTTAATTGAGAA---GAAATAAAAAGGATATTTTGGTATG 175
Query 178 GAGGTGAAGAAATCGGAGATAGAAATGGATGATTCAATCAATAAGGAGATTGAGGCATTA 237
||||||||| ||||| ||||||| |||||||||||| ||||||||||||||| || ||||
Sbjct 176 GAGGTGAAGGAATCGAAGATAGATATGGATGATTCAGTCAATAAGGAGATTGGGGAATTA 235
Query 238 CCCAAAGAGATGCCTTGTACTAGTAACTATGAGGACCATAGTTTTCATAATAATGTT--- 294
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 CCAAAAGATATGCCTTGTACTAGTAACTATGAGGACCATAGTTTTCATAATCATGTTGAA 295
Query 295 GAAGATCTCACTGATGATCGTCTTTGTGGTGGTGGTGATGCTGATGCTGATGCTTCTATT 354
|||||| ||||||| |||| || ||||||||||| |||| |||||||||||||||||||
Sbjct 296 GAAGATGTCACTGAGGATCTTCCTTGTGGTGGTGATGATATTGATGCTGATGCTTCTATT 355
Query 355 AAAAAAGAGGTTGAAGACTTGGACGACGACGAGGTTGATATATTGGGATGCAATGGTGAC 414
||||||||||||| ||| || ||||| ||||||||||||||||||| |||||||| | ||
Sbjct 356 AAAAAAGAGGTTGCAGAGTTCGACGAGGACGAGGTTGATATATTGGAATGCAATGATAAC 415
Query 415 AATGAGATTCAAGTCTC-GGAATGTGACGATGGGACTGATGGATATTCGAGCTCGTTTGA 473
| ||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct 416 ATTGAGATTCAAGTCTCAGG-GTGTGATGATGGGACTGATGGATATTCGAGTTCGTTTGG 474
Query 474 TGGAACGGTTTCTGAACATGGGAGTGATGAAACTGCTTTGAATGATCAAGAAGTTGATTC 533
|||||||| |||||||| ||| | |||||||||||||||||| ||
Sbjct 475 TGGAACGGATTCTGAAC---------ATG--A-------GAATGATCAAGAAGTTGACTC 516
Query 534 CATGGTTTGTAATG-GTACTTCACCTCCTCTCTGGGTGAGAAAGAGGAAGCTGACTGATC 592
|||| ||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 517 CATGATTTGTAATGAG-ACTTCACTTCCTCTTTGGGTGAGAAAAAGGAAGCTGACTGATC 575
Query 593 ATTGGAGGAAGTCTGTACAGCCTA---TAGCGTGGCGTTGCAAATGGATTGAACTCAAAA 649
||||||||| || ||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 576 ATTGGAGGAGGTTTGTACAGCCTACTTTAATGTGGCGTTGCAAATGGATTGAACTC-AAA 634
Query 650 T-CAAAGAAATTCAGAACCAAGCACAGATGTACGACAAAGAAGTTGAAGAATTTTGCCAA 708
| ||||||| |||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 635 TACAAAGAACTTCAGAACCAAGCACAGAAGTACGACAAAGAAGTTGAAGAATATTACCAA 694
Query 709 GCCAAGAAACTGGAGTTAGAAAATGTCAAATCAGAAGAACTTGGAATAAAGGCATTGCCT 768
|||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 695 GCCAAGAAGTTGGAGTTAGAAAATGTCAAATCAGAAGAACTTGGAGTAAAGGCTTTACCT 754
Query 769 CCTCTTCCATGTTATACTCAGAAAACCCAACTCAGGAAGAGGAAAAAGAGAAAGCGAGTT 828
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 755 CCTCTTCCATGTTATACTCAGAAAACCCGACTCATGAAGAGGAAAACGAGAAAGCGAGTT 814
Query 829 GAAGAGACCGCAGATGTTCA-ATCCTATGCATCAAACCATAATCTCTTCTCTTATTATGA 887
||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAAGAGACCGCTGATGTT-ACATCCTATGCATCAAACCATAATCTCTTCTCTTATTATGA 873
Query 888 TTGTCGGAAATCTTTGGCCGATATTGCTCTTAATGACAACTCCCGTAACCTAGATAA-AC 946
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 874 TTGTCGGAAATCTTTGGCCGATATTGCTCTTAATGACAACTCCCGCAACCTAGATAAGA- 932
Query 947 GGAATAAGAGCGCCAAGGATGAGTCAGCATTCTCTGAAGAGTTACCGCCTCTCGAGTTTA 1006
|||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct 933 AGAATAAGAGCGCCAAGGATGAGACAGCTTTCTCTGAAGAGACACCGCCTCTCGAGTTTA 992
Query 1007 GAGAAGGCGATGCGTACTTGGAACAGATACTTTTGAAGATTGAAGCAGCAAAGTCAGAAG 1066
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 993 GAGAAGGCGATGCGTACTTGGAACAGATACTTTTGAAAATTGAAGCAGCAAAGTCAGAAG 1052
Query 1067 CCCGTAACTTGAAGAACCGAGTAGACAAGGTTTTGAGTGAAAATCCCATTACGTTCTCTC 1126
||||||||||||||| ||| |||||||||||||||||||||||||| | || ||| |||
Sbjct 1053 CCCGTAACTTGAAGATCCGCGTAGACAAGGTTTTGAGTGAAAATCCAAGTATATTCCCTC 1112
Query 1127 TGGCTAACACAGTGAATCTACTTGGAGCTGCTGGTGCTGCTGGTGTATACACCAGCTCAG 1186
|||||||||||||||||| |||||||||||||| || | ||||||||||||||
Sbjct 1113 TGGCTAACACAGTGAATCCACTTGGAGCTGCTGATG-T--------ATACACCAGCTCAG 1163
Query 1187 AACaaaaaaaGCCCCTACTTGCTATCAAAAACGAAGATGAGAAATCGATCATTTCTGAAG 1246
||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1164 AACAACAAAAGCCCCTGCTGGCTATCAAAAACGAAGATGAGAAATCGATCATCTCTGAAG 1223
Query 1247 AAAAACCAGTGAAATCTGCTTCAGTTTCATCTCATCACGACACACCTGAAGATGATGAGA 1306
||||||| ||||||||||||||||||||||||||||||| | |||||||||| || ||||
Sbjct 1224 AAAAACCGGTGAAATCTGCTTCAGTTTCATCTCATCACGTCTCACCTGAAGACGACGAGA 1283
Query 1307 CAACAGATATTTTGCTGTCTGAAATCCTGGCATCAAGGCGAAGGGAAGGGAAAGCTATTG 1366
||||||||||||| |||||||| || || ||||||| |||||||||||||||| |||||
Sbjct 1284 CAACAGATATTTTACTGTCTGAGATTCTAGCATCAAAGCGAAGGGAAGGGAAATCTATTA 1343
Query 1367 TTCCCGATAAGAATCTACAGAAGACAGAACAAACTTCAGTTGAGGAAGGTCCATCAAGAC 1426
||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1344 TTCCCGATAAGAATCTAGTGAAGACAGAACAAGCTTCAATTGAGGAAGGTCCATCAAGAC 1403
Query 1427 CTGTAAGGAAAAGAACACCGCGCAATCGTGAAGTGATGACGAAGGAAGAGACTAGCCCAA 1486
|||||||||||||||||||||||||||||||| | || ||||||||||||| || |||||
Sbjct 1404 CTGTAAGGAAAAGAACACCGCGCAATCGTGAAATCATTACGAAGGAAGAGAGTAACCCAA 1463
Query 1487 AGAGACGTAGAGTTTCAAGAGAGAAGCCAAAGTCTAATGCTGTGATGGCTTCTAGGT 1543
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 AGAGGCGTCGGGTTTCAAGAGAGAAGCCAAAGTCTAATGCTGTGATGGCTTCTAGGT 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5