BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490875 Length=1545 Score E Sequences producing significant alignments: (Bits) Value AT4G37440.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1903 0.0 > AT4G37440.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50040.1); Has 220 Blast hits to 205 proteins in 55 species: Archae - 0; Bacteria - 15; Metazoa - 50; Fungi - 11; Plants - 76; Viruses - 3; Other Eukaryotes - 65 (source: NCBI BLink). | chr4:17601222-17604086 FORWARD LENGTH=1828 Length=1828 Score = 1903 bits (1030), Expect = 0.0 Identities = 1390/1557 (89%), Gaps = 52/1557 (3%) Strand=Plus/Plus Query 1 AAAAGCCTCGACCACCTCACCGATAATGGTGGCTATGAGATCTCCGTCTTTTCTCCGTCG 60 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 2 AAAAGCCTCGACCACCT-AACGATAATGGTGGCTATGAGATCTCCGTCTTTTCTCCGTCG 60 Query 61 TGTTTCTCACCGCCGATTATAAAATCCTTCTCTACTGTCATCTCCTTGCCGGAAACAGCG 120 ||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||| ||| Sbjct 61 TGTTTCTCACCGCCGATTATAAAATACTTATCTACTACCATCTCCTTGTCGGAAACGGCG 120 Query 121 AGCTATTCGTCCATTA-GGATTT-A-TGTCAATTCGACGTATACTTGAGAATTTGGTATG 177 ||||| ||| |||| || ||| | || || || || | || | ||||||||| Sbjct 121 AGCTA--AGTCGATTAGGGTTTTAATTGAGAA---GAAATAAAAAGGATATTTTGGTATG 175 Query 178 GAGGTGAAGAAATCGGAGATAGAAATGGATGATTCAATCAATAAGGAGATTGAGGCATTA 237 ||||||||| ||||| ||||||| |||||||||||| ||||||||||||||| || |||| Sbjct 176 GAGGTGAAGGAATCGAAGATAGATATGGATGATTCAGTCAATAAGGAGATTGGGGAATTA 235 Query 238 CCCAAAGAGATGCCTTGTACTAGTAACTATGAGGACCATAGTTTTCATAATAATGTT--- 294 || ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 236 CCAAAAGATATGCCTTGTACTAGTAACTATGAGGACCATAGTTTTCATAATCATGTTGAA 295 Query 295 GAAGATCTCACTGATGATCGTCTTTGTGGTGGTGGTGATGCTGATGCTGATGCTTCTATT 354 |||||| ||||||| |||| || ||||||||||| |||| ||||||||||||||||||| Sbjct 296 GAAGATGTCACTGAGGATCTTCCTTGTGGTGGTGATGATATTGATGCTGATGCTTCTATT 355 Query 355 AAAAAAGAGGTTGAAGACTTGGACGACGACGAGGTTGATATATTGGGATGCAATGGTGAC 414 ||||||||||||| ||| || ||||| ||||||||||||||||||| |||||||| | || Sbjct 356 AAAAAAGAGGTTGCAGAGTTCGACGAGGACGAGGTTGATATATTGGAATGCAATGATAAC 415 Query 415 AATGAGATTCAAGTCTC-GGAATGTGACGATGGGACTGATGGATATTCGAGCTCGTTTGA 473 | ||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||| Sbjct 416 ATTGAGATTCAAGTCTCAGG-GTGTGATGATGGGACTGATGGATATTCGAGTTCGTTTGG 474 Query 474 TGGAACGGTTTCTGAACATGGGAGTGATGAAACTGCTTTGAATGATCAAGAAGTTGATTC 533 |||||||| |||||||| ||| | |||||||||||||||||| || Sbjct 475 TGGAACGGATTCTGAAC---------ATG--A-------GAATGATCAAGAAGTTGACTC 516 Query 534 CATGGTTTGTAATG-GTACTTCACCTCCTCTCTGGGTGAGAAAGAGGAAGCTGACTGATC 592 |||| ||||||||| | ||||||| |||||| ||||||||||| |||||||||||||||| Sbjct 517 CATGATTTGTAATGAG-ACTTCACTTCCTCTTTGGGTGAGAAAAAGGAAGCTGACTGATC 575 Query 593 ATTGGAGGAAGTCTGTACAGCCTA---TAGCGTGGCGTTGCAAATGGATTGAACTCAAAA 649 ||||||||| || ||||||||||| || ||||||||||||||||||||||||| ||| Sbjct 576 ATTGGAGGAGGTTTGTACAGCCTACTTTAATGTGGCGTTGCAAATGGATTGAACTC-AAA 634 Query 650 T-CAAAGAAATTCAGAACCAAGCACAGATGTACGACAAAGAAGTTGAAGAATTTTGCCAA 708 | ||||||| |||||||||||||||||| ||||||||||||||||||||||| || |||| Sbjct 635 TACAAAGAACTTCAGAACCAAGCACAGAAGTACGACAAAGAAGTTGAAGAATATTACCAA 694 Query 709 GCCAAGAAACTGGAGTTAGAAAATGTCAAATCAGAAGAACTTGGAATAAAGGCATTGCCT 768 |||||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||| Sbjct 695 GCCAAGAAGTTGGAGTTAGAAAATGTCAAATCAGAAGAACTTGGAGTAAAGGCTTTACCT 754 Query 769 CCTCTTCCATGTTATACTCAGAAAACCCAACTCAGGAAGAGGAAAAAGAGAAAGCGAGTT 828 |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| Sbjct 755 CCTCTTCCATGTTATACTCAGAAAACCCGACTCATGAAGAGGAAAACGAGAAAGCGAGTT 814 Query 829 GAAGAGACCGCAGATGTTCA-ATCCTATGCATCAAACCATAATCTCTTCTCTTATTATGA 887 ||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 815 GAAGAGACCGCTGATGTT-ACATCCTATGCATCAAACCATAATCTCTTCTCTTATTATGA 873 Query 888 TTGTCGGAAATCTTTGGCCGATATTGCTCTTAATGACAACTCCCGTAACCTAGATAA-AC 946 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 874 TTGTCGGAAATCTTTGGCCGATATTGCTCTTAATGACAACTCCCGCAACCTAGATAAGA- 932 Query 947 GGAATAAGAGCGCCAAGGATGAGTCAGCATTCTCTGAAGAGTTACCGCCTCTCGAGTTTA 1006 |||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| Sbjct 933 AGAATAAGAGCGCCAAGGATGAGACAGCTTTCTCTGAAGAGACACCGCCTCTCGAGTTTA 992 Query 1007 GAGAAGGCGATGCGTACTTGGAACAGATACTTTTGAAGATTGAAGCAGCAAAGTCAGAAG 1066 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 993 GAGAAGGCGATGCGTACTTGGAACAGATACTTTTGAAAATTGAAGCAGCAAAGTCAGAAG 1052 Query 1067 CCCGTAACTTGAAGAACCGAGTAGACAAGGTTTTGAGTGAAAATCCCATTACGTTCTCTC 1126 ||||||||||||||| ||| |||||||||||||||||||||||||| | || ||| ||| Sbjct 1053 CCCGTAACTTGAAGATCCGCGTAGACAAGGTTTTGAGTGAAAATCCAAGTATATTCCCTC 1112 Query 1127 TGGCTAACACAGTGAATCTACTTGGAGCTGCTGGTGCTGCTGGTGTATACACCAGCTCAG 1186 |||||||||||||||||| |||||||||||||| || | |||||||||||||| Sbjct 1113 TGGCTAACACAGTGAATCCACTTGGAGCTGCTGATG-T--------ATACACCAGCTCAG 1163 Query 1187 AACaaaaaaaGCCCCTACTTGCTATCAAAAACGAAGATGAGAAATCGATCATTTCTGAAG 1246 ||||| |||||||||| || |||||||||||||||||||||||||||||||| ||||||| Sbjct 1164 AACAACAAAAGCCCCTGCTGGCTATCAAAAACGAAGATGAGAAATCGATCATCTCTGAAG 1223 Query 1247 AAAAACCAGTGAAATCTGCTTCAGTTTCATCTCATCACGACACACCTGAAGATGATGAGA 1306 ||||||| ||||||||||||||||||||||||||||||| | |||||||||| || |||| Sbjct 1224 AAAAACCGGTGAAATCTGCTTCAGTTTCATCTCATCACGTCTCACCTGAAGACGACGAGA 1283 Query 1307 CAACAGATATTTTGCTGTCTGAAATCCTGGCATCAAGGCGAAGGGAAGGGAAAGCTATTG 1366 ||||||||||||| |||||||| || || ||||||| |||||||||||||||| ||||| Sbjct 1284 CAACAGATATTTTACTGTCTGAGATTCTAGCATCAAAGCGAAGGGAAGGGAAATCTATTA 1343 Query 1367 TTCCCGATAAGAATCTACAGAAGACAGAACAAACTTCAGTTGAGGAAGGTCCATCAAGAC 1426 ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1344 TTCCCGATAAGAATCTAGTGAAGACAGAACAAGCTTCAATTGAGGAAGGTCCATCAAGAC 1403 Query 1427 CTGTAAGGAAAAGAACACCGCGCAATCGTGAAGTGATGACGAAGGAAGAGACTAGCCCAA 1486 |||||||||||||||||||||||||||||||| | || ||||||||||||| || ||||| Sbjct 1404 CTGTAAGGAAAAGAACACCGCGCAATCGTGAAATCATTACGAAGGAAGAGAGTAACCCAA 1463 Query 1487 AGAGACGTAGAGTTTCAAGAGAGAAGCCAAAGTCTAATGCTGTGATGGCTTCTAGGT 1543 |||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1464 AGAGGCGTCGGGTTTCAAGAGAGAAGCCAAAGTCTAATGCTGTGATGGCTTCTAGGT 1520 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76254627855 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5