BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490882
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37390.1 | Symbols: YDK1, GH3.2, BRU6, GH3-2, AUR3 | Auxin-r... 2793 0.0
AT1G59500.1 | Symbols: GH3.4 | Auxin-responsive GH3 family prot... 2410 0.0
AT2G23170.1 | Symbols: GH3.3 | Auxin-responsive GH3 family prot... 1343 0.0
> AT4G37390.1 | Symbols: YDK1, GH3.2, BRU6, GH3-2, AUR3 | Auxin-responsive
GH3 family protein | chr4:17579657-17582022 FORWARD
LENGTH=2131
Length=2131
Score = 2793 bits (1512), Expect = 0.0
Identities = 1713/1813 (94%), Gaps = 2/1813 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGTTGATTCGCCTCTTCAATCTCGGATGGTTTCACCGACGACCTCTGAGAAAGAT 60
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 66 ATGGCCGTTGATTCACCTCTTCAATCTCGGATGGTTTCAGCGACGACTTCTGAGAAAGAT 125
Query 61 GTGAAGGCTCTCAAGTTCATTGAGGAGATGACTCGGAACCCTGACTCGGTTCAAGAAAAG 120
||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 126 GTGAAAGCTCTCAAGTTCATTGAAGAAATGACTCGGAACCCTGACTCGGTTCAAGAGAAG 185
Query 121 GTTCTTGGAGAGATACTAAGTCGTAACTCGAACACCGAATATCTGAAACGGTTCGATATC 180
||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |
Sbjct 186 GTTCTTGGAGAGATACTGACTCGTAACTCTAACACCGAATATCTGAAACGGTTCGATCTT 245
Query 181 AATGGGGCCATTGATCGGAATACGTTCAAGAACAAAGTTCCGGTGGTTACTTACGAAGAT 240
|||| | | |||||||||| |||||||||| |||||||||||||||||| |||||||||
Sbjct 246 GATGGTGTCGTTGATCGGAAAACGTTCAAGAGCAAAGTTCCGGTGGTTACGTACGAAGAT 305
Query 241 TTAAAGCCGGAGATTCAACGTATATCCAACGGTGATCGTTCTCCGATCTTGTCCTCTCAC 300
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 306 TTGAAGCCGGAGATTCAACGTATATCCAACGGCGATTGTTCTCCGATCTTGTCTTCTCAC 365
Query 301 CCCATCACCGAGTTTCTCACAAGCTCTGGAACATCTGCTGGTGAGAGGAAATTAATGCCG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 366 CCCATCACCGAGTTTCTCACAAGCTCAGGAACATCTGCTGGTGAGAGGAAACTAATGCCA 425
Query 361 ACAATTGAAGAAGACTTAGACCGACGTCAGCTTTTATACAGTCTTCTCATGCCTGTGATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 ACAATTGAAGAAGACTTAGACCGACGTCAGCTTTTATACAGTCTTCTCATGCCTGTGATG 485
Query 421 AATCTGTACGTGCCGGGATTAGACAAAGGCAAAGGCTTATACTTCTTATTTGTGAAGTCG 480
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 486 AATCTCTACGTGCCGGGATTAGACAAAGGCAAAGGGTTATACTTCTTATTCGTGAAGTCG 545
Query 481 GAGTCTAAGACGTCAGGTGGGTTACCGGCTCGTCCAGTTCTCACGAGTTACTACAAAAGC 540
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 546 GAGTCAAAGACGTCAGGTGGGTTACCGGCTCGTCCGGTTCTCACGAGTTATTACAAAAGC 605
Query 541 GACCACTTCAGGAGGCGACCGTACGATCCGTACAACGTCTACACTAGTCCTAACGAAGCC 600
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GACCACTTCAAGAGACGACCGTACGATCCGTACAACGTCTACACTAGTCCTAACGAAGCC 665
Query 601 ATCCTCTGCTCCGACTCTTCTCAAAGCATGTATGCTCAAATGCTATGTGGTCTATTAATG 660
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 666 ATCCTCTGCTCCGACTCGTCCCAAAGCATGTATGCTCAAATGCTATGTGGTCTCTTAATG 725
Query 661 CGCCATGAAGTTCTCCGACTAGGCGCCGTGTTTGCTTCAGGTCTCCTCCGTGCCTTAAGC 720
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||
Sbjct 726 CGCCATGAAGTTCTCCGACTCGGCGCAGTGTTTGCTTCCGGTCTCCTCCGTGCCATAAGC 785
Query 721 TTTCTCCAGAACAATTGGAAGGAACTTGCTCGAGATATCTCAACGGGAACCCTAAGTTCT 780
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 786 TTCCTCCAGAACAATTGGAAGGAACTTGCTCGTGATATCTCAACCGGAACCCTAAGTTCT 845
Query 781 AGAATCTTCGATCCTACGATTAAAAACCGCATGTCAAAGATTTTGATCAAACCTGATCAA 840
|||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 846 CGAATCTTCGATCCTGCCATTAAAAACCGCATGTCCAAGATTTTGACCAAACCTGATCAA 905
Query 841 GAACTTGCTGAGTTTTTGATTGGTGTTTGTTCGCAAGAGAGTTGGGAAGGGATAATCACA 900
||||| |||||||||||| |||| |||||||| ||||||| |||||||||||||||||||
Sbjct 906 GAACTGGCTGAGTTTTTGGTTGGGGTTTGTTCACAAGAGAATTGGGAAGGGATAATCACA 965
Query 901 AAGATATGGCCTAACACGAAGTACCTTGATGTGATTGTTACTGGTGCGATGGCTCAGTAT 960
|||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||
Sbjct 966 AAGATATGGCCTAACACGAAGTACCTCGACGTGATTGTTACTGGAGCAATGGCTCAGTAT 1025
Query 961 ATCCCGACGTTGGAGTACTATAGCGGCGGATTACCGATGGCTTGCACAATGTATGCTTCG 1020
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1026 ATCCCGACGTTGGAGTACTATAGCGGTGGATTACCGATGGCTTGCACGATGTATGCTTCG 1085
Query 1021 TCCGAAAGTTACTTCGGGATTAACCTAAAGCCGATGTGTAAACCCTCAGAGGTTTCTTAC 1080
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1086 TCCGAAAGTTATTTCGGGATTAACCTAAAGCCGATGTGTAAACCCTCGGAGGTTTCTTAC 1145
Query 1081 ACAATCATGCCCAACATGGCCTACTTCGAATTTCTCCCACATAATCACGATGGAGATGGA 1140
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1146 ACAATCATGCCAAACATGGCCTACTTTGAATTCCTCCCACATAATCACGATGGAGATGGA 1205
Query 1141 GCAACAGAAGCATCATTAGACGAAACCTCACTTGTAGAGCTAGCTGATGTTGAGGTCGGA 1200
||| |||||||||||||||||||||| |||||||| ||||| ||| |||||||||| |||
Sbjct 1206 GCAGCAGAAGCATCATTAGACGAAACGTCACTTGTGGAGCTTGCTAATGTTGAGGTAGGA 1265
Query 1201 AAAGAGTATGAACTCGTGATCACAACCTACGCGGGGCTCTACCGTTACAGAGTTGGCGAC 1260
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1266 AAAGAGTACGAACTCGTGATCACGACCTACGCGGGGCTCTACCGTTACAGAGTTGGCGAC 1325
Query 1261 ATTCTCCGTGTCACGGGGTTCCATAATTCCGCTCCACAGTTCAAATTCATACGAAGAAAG 1320
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1326 ATTCTTCGTGTCACGGGGTTCCATAATTCCGCTCCACAGTTCAAATTCATACGGAGAAAG 1385
Query 1321 AATGTTTTGTTAAGCATCGAATCCGATAAAACCGACGAGGCTGAGCTACAAAAGGCAGTG 1380
|||||| || ||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1386 AATGTTCTGCTAAGCGTAGAATCCGATAAAACCGACGAGGCTGAGCTACAAAAAGCAGTG 1445
Query 1381 GAGAATGCGTCGCGGTTGTTTGCAGAGCAAGGAACACGTGTGATCGAGTACACGAGCTAC 1440
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1446 GAGAATGCGTCGAGGTTGTTTGCAGAGCAAGGAACACGTGTGATCGAGTACACAAGCTAC 1505
Query 1441 GCAGAAACGAAGACTATACCGGGTCATTACGTAATCTACTGGGAGCTACTTGGTAGAGAC 1500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 GCAGAAACGAAGACTATACCGGGTCATTACGTAATCTACTGGGAGCTACTTGGTAGAGAT 1565
Query 1501 CAAAGCAATGCTCTTCCT-AGCGAAGAAGTCATGGCTAAGTGCTGTTTGGAGATGGAGGA 1559
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 CAAAGCAATGCTCTTA-TGAGCGAAGAAGTCATGGCTAAGTGCTGTTTGGAGATGGAGGA 1624
Query 1560 ATCCCTAAACTCGGTTTATAGACAAAGCCGGGTCGCTGATAAATCGATCGGTCCATTGGA 1619
||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1625 ATCTTTAAACTCGGTTTATAGACAAAGCCGGGTCGCTGATAAATCGATCGGCCCGTTGGA 1684
Query 1620 GATACGTGTAGTGCAAAACGGTACGTTTGAGGAGCTTATGGACTATGCCATCTCGAGAGG 1679
||||||||| || | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1685 GATACGTGTGGTACGGAACGGTACGTTTGAGGAGCTCATGGACTATGCCATCTCGAGAGG 1744
Query 1680 CGCATCGATTAATCAGTATAAGGTCCCGAGGTGCGTGAGCTTCACACCGATCATGGAACT 1739
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1745 CGCATCGATTAATCAGTATAAGGTACCGAGGTGCGTGAGCTTCACACCTATCATGGAGCT 1804
Query 1740 GCTTGACTCTAGAGTTGTGTCTGCTCATTTCAGCCCTTCATTGCCGCACTGGTCACCAGA 1799
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1805 GCTTGACTCTAGAGTTGTGTCTGCTCATTTCAGCCCTTCGTTGCCGCATTGGTCACCAGA 1864
Query 1800 ACGACGTCGTTAG 1812
|||||||||||||
Sbjct 1865 ACGACGTCGTTAG 1877
> AT1G59500.1 | Symbols: GH3.4 | Auxin-responsive GH3 family protein
| chr1:21854493-21856614 REVERSE LENGTH=1794
Length=1794
Score = 2410 bits (1305), Expect = 0.0
Identities = 1652/1818 (91%), Gaps = 30/1818 (2%)
Strand=Plus/Plus
Query 1 ATGGCCGTTGATTCGCCTCTTCAATCTCGGATGGTTTCACCGACGACCTCTGAGAAAGAT 60
||||| |||||||||| |||||||||| |||||| |||||||||||| ||||||| |||
Sbjct 1 ATGGCTGTTGATTCGCTTCTTCAATCTGGGATGGCTTCACCGACGACATCTGAGACAGAG 60
Query 61 GTGAAGGCTCTCAAGTTCATTGAGGAGATGACTCGGAACCCTGACTCGGTTCAAGAAAAG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GTGAAGGCTCTCAAGTTCATTGAGGAGATTACTCGGAACCCTGACTCGGTTCAAGAAAAG 120
Query 121 GTTCTTGGAGAGATACTAAGTCGTAACTCGAACACCGAATATCTGAAACGGTTCGATATC 180
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 121 GTTCTTGGAGAGATACTTAGTCGTAACTCGAACACGGAATATCTGAAACGGTTCGATCTT 180
Query 181 AATGGGGCCATTGATCGG-AATACGTTCAAGAACAAAGTTCCGGTGGTTACT-TACGAAG 238
||||| ||| ||||| || ||| ||||||||| |||||||||||||| || | |||||||
Sbjct 181 AATGGTGCCGTTGATAGGAAAT-CGTTCAAGAGCAAAGTTCCGGTGG-TAATCTACGAAG 238
Query 239 ATTTAAAGCCGGAGATTCAACGTATATCCAACGGTGATCGTTCTCCGATCTTGTCCTCTC 298
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 ATTTGAAGACGGATATTCAACGTATATCCAACGGTGATCGTTCTCCGATCTTGTCTTCTC 298
Query 299 ACCCCATCACCGAGTTTCTCACAAGCTCTGGAACATCTGCTGGTGAGAGGAAATTAATGC 358
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 ATCCCATCACCGAGTTTCTCACAAGCTCTGGAACATCTGCTGGCGAGAGGAAATTAATGC 358
Query 359 CGACAATTGAAGAAGACTTAGACCGACGTCAGCTTTTATACAGTCTTCTCATGCCTGTGA 418
||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 359 CGACAATTGAAGAAGACATAAACCGACGTCAGCTTTTAGGCAATCTTCTCATGCCTGTGA 418
Query 419 TGAATCTGTACGTGCCGGGATTAGACAAAGGCAAAGGCTTATACTTCTTATTTGTGAAGT 478
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 TGAATCTCTACGTGCCGGGATTAGACAAAGGCAAAGGTTTATACTTCTTATTTGTGAAGT 478
Query 479 CGGAGTCTAAGACGTCAGGTGGGTTACCGGCTCGTCCAGTTCTCACGAGTTACTACAAAA 538
||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 479 CGGAGTCTACGACATCAGGTGGGTTACCGGCTCGTCCAGCTCTCACTAGTTACTACAAAA 538
Query 539 GCGACCACTTCAGGAGGCGACCGTACGA-TCCGTACAACGTCTACACTAGTCCTAACGAA 597
||||| ||||||||| || || || || | ||| |||||||||||||||||| |||
Sbjct 539 GCGACTACTTCAGGA--CG-TCG---GATTCAG-ACAGCGTCTACACTAGTCCTAAGGAA 591
Query 598 GCCATCCTCTGCTCCGACTCTTCTCAAAGCATGTATGCTCAAATGCTATGTGGTCTATTA 657
||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||| |||
Sbjct 592 GCCATCCTCTGCTGTGACTCGTCTCAAAGCATGTATACGCAAATGCTATGTGGTCTCTTA 651
Query 658 ATGCGCCATGAAGTTCTCCGACTAGGCGCCGTGTTTGCTTCAGGTCTCCTCCGTGCCTTA 717
||||||||||||||| |||||| || || |||||| |||| ||||||||||||||| ||
Sbjct 652 ATGCGCCATGAAGTTAACCGACTCGGTGCGGTGTTTCCTTCTGGTCTCCTCCGTGCCATA 711
Query 718 AGCTTTCTCCAGAACAATTGGAAGGAACTTGCTCGA-GATATCTCAA-CGGGAACCCTAA 775
||||| |||||||||||||||||||||||| ||| | |||||||||| |||| |||||||
Sbjct 712 AGCTTCCTCCAGAACAATTGGAAGGAACTTTCTC-AGGATATCTCAACCGGG-ACCCTAA 769
Query 776 GTTCTAGAATCTTCGATCCTACGATTAAAAAC-CGCATGTCAAAGATTTTGATCAAACCT 834
|||||| |||||| |||| | ||||| ||||| || ||||| || ||||||| |||||||
Sbjct 770 GTTCTAAAATCTTTGATCATGCGATT-AAAACTCGAATGTCGAATATTTTGAACAAACCT 828
Query 835 GATCAAGAACTTGCTGAGTTTTTGATTGGTGTTTGTTCGCAAGAGAGTTGGGAAGGGATA 894
||||||||||| |||||||||||||| || |||||||||||||||| ||||||||| |||
Sbjct 829 GATCAAGAACTGGCTGAGTTTTTGATAGGGGTTTGTTCGCAAGAGAATTGGGAAGGAATA 888
Query 895 ATCACAAAGATATGGCCTAACACGAAGTACCTTGATGTGATTGTTACTGGTGCGATGGCT 954
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 889 ATCACAAAGATATGGCCTAACACAAAGTACCTTGATGTGATTGTTACTGGTGCAATGGCT 948
Query 955 CAGTATATCCCGACGTTGGAGTACTATAGCGGCGGATTACCGATGGCTTGCACAATGTAT 1014
|||||||||| | |||||||||||||||||| || ||||| ||||| ||| || |||
Sbjct 949 GAGTATATCCCAATGTTGGAGTACTATAGCGGTGGGTTACCAATGGCAAGCATGATTTAT 1008
Query 1015 GCTTCGTCCGAAAGTTACTTCGGGATTAACCTAAAGCCGATGTGTAAACCCTCAGAGGTT 1074
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1009 GCTTCATCCGAAAGTTACTTCGGGATTAACCTAAATCCGATGTGTAAACCCTCGGAGGTT 1068
Query 1075 TCTTACACAATCATGCCCAACATGGCCTACTTCGAATTTCTCCCACATAATCACGATGGA 1134
|||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1069 TCTTACACAATCTTCCCCAACATGGCCTACTTCGAATTCCTCCCACATAATCACGATGGA 1128
Query 1135 GATGGAGCAACAGAAGCATCATTAGACGAAACCTCACTTGTAGAGCTAGCTGATGTTGAG 1194
||||||| | || |||| | |||||||||||| ||||||||||||||||||
Sbjct 1129 GATGGAG-----G-AG------TAGAAGCAACCTCACTTGTGGAGCTAGCTGATGTTGAG 1176
Query 1195 GTCGGAAAAGAGTATGAACTCGTGATCACAACCTACGCGGGGCTCTACCGTTACAGAGTT 1254
|| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1177 GTTGGAAAGGAGTATGAACTTGTGATCACGACCTACGCGGGGCTCTACCGTTACAGAGTT 1236
Query 1255 GGCGACATTCTCCGTGTCACGGGGTTCCATAATTCCGCTCCACAGTTCAAATTCATACGA 1314
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1237 GGCGACATTCTTCGTGTCACGGGGTTTCATAATTCCGCTCCACAGTTCAAATTCATACGG 1296
Query 1315 AGAAAGAATGTTTTGTTAAGCATCGAATCCGATAAAACCGACGAGGCTGAGCTACAAAAG 1374
||| ||||||||||| ||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 1297 AGAGAGAATGTTTTGCTAAGCATTGAATCTGATAAAACAGACGAGGCTGATTTACAAAAG 1356
Query 1375 GCAGTGGAGAATGCGTCGCGGTTGTTTGCAGAGCAAGGAACACGTGTGATCGAGTACACG 1434
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1357 GCAGTGGAGAATGCGTCGAGGTTGCTTGCAGAGCAAGGAACACGTGTGATCGAGTATACG 1416
Query 1435 AGCTACGCAGAAACGAAGACTATACCGGGTCATTACGTAATCTACTGGGAGCTACTTGGT 1494
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1417 AGCTACGCAGATACGAAGACTATACCTGGTCATTACGTAATCTACTGGGAGCTACTTAGT 1476
Query 1495 AGAGACCAAAGCAATGCTCTTCCTAGCGAAGAAGTCATGGCTAAGTGCTGTTTGGAGATG 1554
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1477 AGAGACCAAAGCAATGCTCTTCCTAGTGACGAAGTCATGGCTAAGTGCTGTTTGGAGATG 1536
Query 1555 GAGGAATCCCTAAACTCGGTTTATAGACAAAGCCGGGTCGCTGATAAATCGATCGGTCCA 1614
|||||||| || ||| |||||||||||||||| ||||| | |||||||| ||||||||
Sbjct 1537 GAGGAATCGCTGAACGCGGTTTATAGACAAAGTCGGGTTTCAGATAAATCTATCGGTCCG 1596
Query 1615 TTGGAGATACGTGTAGTGCAAAACGGTACGTTTGAGGAGCTTATGGACTATGCCATCTCG 1674
|||||||||||||| ||||| ||||| |||||||||||||| ||||||| | ||||||||
Sbjct 1597 TTGGAGATACGTGTGGTGCAGAACGGCACGTTTGAGGAGCTCATGGACTTTTCCATCTCG 1656
Query 1675 AGAGGCGCATCGATTAATCAGTATAAGGTCCCGAGGTGCGTGAGCTTCACACCGATCATG 1734
||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1657 AGAGGTTCATCGATTAATCAGTATAAGGTCCCGAGGTGCGTAAGCCTCACACCGATCATG 1716
Query 1735 GAACTGCTTGACTCTAGAGTTGTGTCTGCTCATTTCAGCCCTTCATTGCCGCACTGGTCA 1794
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1717 AAACTGCTTGACTCTAGAGTTGTGTCTGCTCATTTCAGCCCTTCGTTGCCGCATTGGTCG 1776
Query 1795 CCAGAACGACGTCGTTAG 1812
||||||||||||| ||||
Sbjct 1777 CCAGAACGACGTCATTAG 1794
> AT2G23170.1 | Symbols: GH3.3 | Auxin-responsive GH3 family protein
| chr2:9863855-9866562 REVERSE LENGTH=2118
Length=2118
Score = 1343 bits (727), Expect = 0.0
Identities = 1487/1844 (81%), Gaps = 92/1844 (5%)
Strand=Plus/Plus
Query 1 ATGGCCGTTGATTC-GCCTCTTCAATCTCGGATGGTTTCAC-CGA-CGACCTCTGAGAAA 57
||| |||||||||| | |||| | ||||| ||| | | ||| | | || || || ||
Sbjct 61 ATGACCGTTGATTCAG-CTCTGCGATCTCCGAT-GATGCACTC-ACCGTCCACT---AAG 114
Query 58 GATGTGAAGGCTCTCAA-GTTCATTGAGGAGATGACTCGGAACCCT-GA-CTCGGTTCAA 114
|| ||||||||||| || |||||||||||||||||| || || | | || || |||| |
Sbjct 115 GACGTGAAGGCTCT-AAGGTTCATTGAGGAGATGACACGTAA-CGTCGATTTC-GTTC-A 170
Query 115 GAA-AAGGTTCTTGGAGAGATACTAAGTCGTAACTCGAACACCGAATATCTGAAACGGTT 173
||| || || || |||||||||| |||||||||||| |||| || || |||||||||||
Sbjct 171 GAAGAAAGTGATTAGAGAGATACTTAGTCGTAACTCGGACACTGAGTACCTGAAACGGTT 230
Query 174 CGATATCAATGGG-GCCATTGATCGGAATACGTTCAAGAACAAAGTTCCGGTGGTTACT- 231
| | |||| ||| || ||| || || || || |||| ||||||||||||||||| |
Sbjct 231 TGGTCTCAA-GGGATTCACTGACCGTAAAACATTTAAGACCAAAGTTCCGGTGGTTA-TC 288
Query 232 TACGAAGAT-TTAAAGCCGGAGATTCAACGTATAT-CCAACGGTGATCGTTCTCCGATCT 289
||||| ||| ||||| ||||||||||||||||| | |||| ||||| || || |||||
Sbjct 289 TACGATGATCTTAAA-CCGGAGATTCAACGTAT-TGCCAATGGTGACCGGTCAATGATCT 346
Query 290 TGTCCTCTCACCCCATCACCGAGTTTCTCACAAGCTCTGGAACATCTGCTGGTGAGAGGA 349
|||| ||| |||||||||| ||||| |||||||||||||| ||||| |||||||| ||||
Sbjct 347 TGTCTTCTTACCCCATCACAGAGTTCCTCACAAGCTCTGGGACATCAGCTGGTGAAAGGA 406
Query 350 AATTAATGCCGACAATTGAAGAAGACTTAGACCGACGTCAGCTTTTATACAGTCTTCTCA 409
| || ||||| || ||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 407 AGTTGATGCCAACCATTGATGAAGACATGGACCGACGTCAGCTTTTATACAGTCTTCTCA 466
Query 410 TGCCTGTGATGAATCTGTACGTGCCGGGATTAGACAAAGGCAAAGGCT-TATACTTCTTA 468
|||||||||||||||| |||||||| ||||||||||||||||| |||| |||| || ||
Sbjct 467 TGCCTGTGATGAATCTCTACGTGCCCGGATTAGACAAAGGCAA-GGCTCTATATTTTTTG 525
Query 469 TTTGTGAAGTCGGAGTCTAAGACGTCA-GGTGGGTTACCGGCTCGTCCAGTTCTCACGAG 527
|| |||||| |||| || ||||| || ||||| ||||| || ||||| || ||||||||
Sbjct 526 TTCGTGAAGACGGAATCGAAGAC-TCCCGGTGGATTACCAGCACGTCCGGTGCTCACGAG 584
Query 528 TTACTACAAAAGCGACCACTTCAGGAGGCGACCGTA-CGATCCGTACAACGTCTACACTA 586
||| ||||||||||| || |||| ||| || || || ||||||||||||||| ||||| |
Sbjct 585 TTATTACAAAAGCGAACAATTCAAGAGACGTCC-TAACGATCCGTACAACGTGTACACGA 643
Query 587 GTCCTAACGAAGCCATCCTCTGCTCC-GACTCTTCTCAAAGCATGTATGCTCAAATGCTA 645
| ||||||||||||||||| || ||| ||||| || ||||||||||| | || |||||
Sbjct 644 GCCCTAACGAAGCCATCCTTTG-TCCAGACTCATCCCAAAGCATGTACACGCAGATGCTT 702
Query 646 TGTGGTCTA-TTAATGCGCCATGAAGTTCTCCGACTAGGCGCCGTGTTTGCTTCAGGTCT 704
|||||||| ||| |||| || ||||| ||||| || |||||||| || ||||| |||||
Sbjct 703 TGTGGTCTCCTTA-TGCGTCACGAAGTCCTCCGTCTCGGCGCCGTCTTCGCTTCTGGTCT 761
Query 705 CCTCCGTGCC-TTAAGCTTTCTCCAGAAC-AATTGGAAGGAACTTGCTCGA-GATATCTC 761
|||||||||| || | || || || ||| |||||||| ||||| || ||| ||||||||
Sbjct 762 CCTCCGTGCCATTG-GATTCCTTCA-AACCAATTGGAAAGAACTCGC-CGACGATATCTC 818
Query 762 AACGGGAACCCTAAGTTCTAGAATCT-TCGATCCTACGATTAAAAACCGCATGTCAAAGA 820
|| || ||| ||||||| ||||||| | || || | |||||| | ||||||| ||||
Sbjct 819 CACCGGTACCTTAAGTTCAAGAATCTCT-GACCCGGCCATTAAAGAGAGCATGTCCAAGA 877
Query 821 TTTTGATCAAACCTGATCAAGAACTTGCTGAGTTTT-TGA-TT-GGTGTTTGTTC--G-C 874
| |||| |||||| || |||||||| ||||| ||| | | || ||| | || || | |
Sbjct 878 TCTTGACCAAACCGGACCAAGAACTGGCTGA-TTTCATAACTTCGGTATGTGGTCAAGAC 936
Query 875 AAGAGAGTTGGGAAGGGATAATCACAAAGATATGGCCTAACACGAAGTACCTTGATGTGA 934
|| || ||||||||| || || || ||||| ||||||||||| ||||||||||| || |
Sbjct 937 AATAG--TTGGGAAGGTATTATTACTAAGATTTGGCCTAACACTAAGTACCTTGACGTCA 994
Query 935 TTGTTACTGGTGCGATGGCTCAGTATATCCCGACG-TTGGAGTACTATAGCGGCGGATTA 993
| |||||||| || ||||||||||||||||||| | ||| |||||||||||||||| |||
Sbjct 995 TCGTTACTGGAGCCATGGCTCAGTATATCCCGATGCTTG-AGTACTATAGCGGCGGGTTA 1053
Query 994 CCGATGGCTTGCACAATGTATGCTTCGTCCGAAAGTTACTTCGGGATTAACCT-AAAGCC 1052
|||||||||||||| |||||||| |||||||| |||||||| ||||| ||| | ||| ||
Sbjct 1054 CCGATGGCTTGCACGATGTATGCATCGTCCGAGAGTTACTTTGGGATCAACTTGAAA-CC 1112
Query 1053 GATGTGTAAACCCTCAGAGGTTTCTTACACAATCATGCCCAACATGGCCTACTTCGAATT 1112
||||||||||| || ||||||||||| || || ||||| |||||||| |||||||| ||
Sbjct 1113 AATGTGTAAACCTTCTGAGGTTTCTTATACCATTATGCCAAACATGGCATACTTCGAGTT 1172
Query 1113 TCTCCCACATAATCACGATGGAGATGGAGCAACAGAAGCATCATTAGACGAAACCTCACT 1172
|||||| ||| || || || | |||| ||| ||| |||| | | |
Sbjct 1173 TCTCCCTCATCAT---GA---AG-TCC--CAACCGAAAAATC------CGAA-C-T---T 1212
Query 1173 TGTAGAGCTAGCTGATGTTGAGGTCGGAAAAGAGTATGAACTCGTGATCACAACCTACGC 1232
|| |||||||||||||| |||||||| |||||||| || || |||||||||||||| ||
Sbjct 1213 -GTGGAGCTAGCTGATGTCGAGGTCGGGAAAGAGTACGAGCTTGTGATCACAACCTATGC 1271
Query 1233 GGGGCTCTA-CCGTTACAGAGTTGGCGACATTCTCC-GTGTCACGGGGTTCCATAATTCC 1290
||||| || |||||| |||||||| || ||||| | | || || || ||| | ||||||
Sbjct 1272 TGGGCT-TAACCGTTATAGAGTTGGTGATATTCTTCAG-GTGACTGGATTCTACAATTCC 1329
Query 1291 GCTCCACAGTTCAAATTCATACGAAGAAAGAATGTTTTG-TTAAGCATCGAATCCGATAA 1349
|||||||||||||| || | || || ||||| |||||| ||| |||| || || |||||
Sbjct 1330 GCTCCACAGTTCAAGTTTGTGCGGAGGAAGAACGTTTTGCTTA-GCATTGAGTCGGATAA 1388
Query 1350 AACCGACGAGGCTGAGCTACAAAAG-GCAGTGGAGAATGCGTCGCGGTTGTTTGCAGAGC 1408
|||||| || |||||||| |||| | || || ||||| || |||| || ||| |||||
Sbjct 1389 AACCGATGAAGCTGAGCTCCAAA-GCGCGGTTGAGAACGCATCGCTCTTACTTGGAGAGC 1447
Query 1409 AAGGAACACGTGTGATCGAGTACACGAGCTACGCAGAAACGAAGACTATACCGGGTCATT 1468
||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||
Sbjct 1448 AAGGAACTCGTGTTATCGAGTACACGAGCTATGCAGAGACGAAGACTATACCTGGCCATT 1507
Query 1469 ACGTAATCTACTGGGAGCTACTTG-GTAGAGACCAAAGCAATGCTCTTCCTAGCGAAGAA 1527
| || || ||||||||||| || | | || || |||| |||| | || || | || |||
Sbjct 1508 ATGTCATTTACTGGGAGCTTCTAGTGAAG-GATCAAACCAAT-C-CT-CCAAATGACGAA 1563
Query 1528 GTCATGGCTAAGTGCTGTTTGGAGATGGAGGAATCCCTAAACTCGGTTTATAGACAAAGC 1587
||||||||| |||||| ||||| |||||||| || | ||||| || |||||||||||
Sbjct 1564 GTCATGGCTCGGTGCTGCTTGGAAATGGAGGAGTCGTTGAACTCTGTGTATAGACAAAGT 1623
Query 1588 CGGGTCGCTGATAAATCGATCGGTCCATTGGAGATACGTGTAGTGCAA-AACGGTACGTT 1646
||||| || ||||| ||||| || ||| | ||||||||||| ||| || || || |||||
Sbjct 1624 CGGGTTGCGGATAAGTCGATAGGACCACTCGAGATACGTGTTGTG-AAGAATGGAACGTT 1682
Query 1647 TGAGGAGCTTATGGACTATGCCATCTCGAGAGGCGCATCGATTAATCAGTATAAGGTCCC 1706
|||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct 1683 CGAGGAGCTCATGGACTATGCCATCTCCAGAGGCGCATCGATCAATCAGTACAAGGTGCC 1742
Query 1707 GAGGTGCGTGAGCTTCACACCGATCATGGAACTGCTTGACTCTAGAGTTGTGTCTGCTCA 1766
|||||| ||||| ||||| || || ||||| || |||||||| || ||||| ||| | ||
Sbjct 1743 GAGGTGTGTGAGTTTCACGCCAATAATGGAGCTTCTTGACTCAAGGGTTGTATCTACACA 1802
Query 1767 TTTCAGCCCTTCATTGCCGCACTGGTCACCAGAACGACGTCGTT 1810
|||||||| | ||||| || |||||||||||||| |||||||
Sbjct 1803 CTTCAGCCCAGCTTTGCCACATTGGTCACCAGAACGTCGTCGTT 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89658173370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5