BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490889
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37310.1 | Symbols: CYP81H1 | cytochrome P450, family 81, su... 2444 0.0
> AT4G37310.1 | Symbols: CYP81H1 | cytochrome P450, family 81,
subfamily H, polypeptide 1 | chr4:17555927-17558943 REVERSE
LENGTH=1892
Length=1892
Score = 2444 bits (1323), Expect = 0.0
Identities = 1582/1708 (93%), Gaps = 14/1708 (1%)
Strand=Plus/Plus
Query 1 AAGTTAGAGaaaaaaaGAAGAGCAAAGGAGTTATGGAT-AATTATATTTTACTTATTCTC 59
|||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||
Sbjct 75 AAGTTAGAGAAAAAAAGAAGAGAAAAGGAGTTATATATGGATTGTATTTTACTTATTCTG 134
Query 60 ACCATC-CTTGTAACAATTCTCATCACCAAGATTTTTCTCCTATTCGCTAAACCAAACAT 118
|| | | ||||| | ||| ||||| ||||||| |||||||| || ||||||| ||||
Sbjct 135 ACTA-CTCTTGTTGCCATTTTCATCGTCAAGATTGTTCTCCTAGTCACTAAACCTAACAA 193
Query 119 AAACCTTCCACCGTCGCCACGTATCTGTTTTCCAATCATCGGACACCTTCACCTCCTCAA 178
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 194 AAACCTTCCACCGTCGCCAAATATATGTTTTCCGATCATCGGACACCTTCACCTCCTCAA 253
Query 179 ACAGCCACTGCTACACCGGACTCTCAGCCATCTCTCGCACTCCCTCGGCCCCGTCTTTTC 238
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 254 AAAGCCACTGCTACACCGGACTCTCAGCCATCTCTCCCACTCCCTCGGCCCCGTCTTTTC 313
Query 239 TATACGCCTCGGCTCTCGCCTCGCCGTTATCATCTCGTCTCCAACGGCAGCAGAAGAATG 298
| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 314 TCTACGCCTCGGCTCTCGCCTTGCCGTTATCATCTCATCTCCAACGGCAGCCGAAGAATG 373
Query 299 CTTTTTGACGAAAAACGACATCGTTTTAGCAAATCGGCCTCGTTTCATCATGGGCAAGTA 358
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 CTTCTTGACGAAAAACGACATCGTTTTAGCAAATCGGCCTCGTTTCATCATGGGCAAGTA 433
Query 359 CGTGGCTTATGACTACACCTCCATGGTTACGGCTCCTTACGGTGACCATTGGCGAAATCT 418
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 434 TGTGGCTTATGACTACACCTCCATGGTTACGGCTCCTTACGGTGACCACTGGCGAAACCT 493
Query 419 CCGTCGTATCACCGCCTTAGAAGTCTTCTCCACGAATCGACTCAACGGC-TCAGCAGAAA 477
||||||||||||||| ||||||||||||||||| |||||||||||| || ||||| ||||
Sbjct 494 CCGTCGTATCACCGCTTTAGAAGTCTTCTCCACAAATCGACTCAAC-GCTTCAGCGGAAA 552
Query 478 TCCGACAAGACGAAGTTAAGAGGCTTCTCCAAAAGCTTCACGGTTTATCTGTGGAACGCC 537
||||||| ||||||||||||| |||||||||||||||||||| ||||||||| |||||||
Sbjct 553 TCCGACATGACGAAGTTAAGATGCTTCTCCAAAAGCTTCACGATTTATCTGTCGAACGCC 612
Query 538 CGGCTAACGTGGAGTTACGACCGTTACTAACTGGTCTTACCCTAAATGTGATAATGAGAA 597
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 613 CGGCTAAAGTGGAGTTACGACAGTTACTAACGGGTCTTACCCTAAATGTGATAATGAGAA 672
Query 598 TGATGACCGGAAAGAGATTCTACGAAGAAGATGA-GAGCGGAAAGGCGGCGATGAGCTTG 656
||||||||||||||||||||| ||| |||||||| | |||||||||||| ||| || |||
Sbjct 673 TGATGACCGGAAAGAGATTCTTCGAGGAAGATGATG-GCGGAAAGGCGGGGATAAGTTTG 731
Query 657 GAGTTCCGGGAACTTGTGGCGGAGATTCTAGAGCTCTCCGCGGCCGACAATCCAGCTGAT 716
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 732 GAGTTCCGGGAACTAGTGGCGGAGATTCTAGAGCTCTCTGCGGCGGACAATCCAGCTGAT 791
Query 717 TTTTTGCCGGCTCTACGGTGGTTTGACTACAAGGGTTTGGTCAAGAGAGCAAAAAGGATT 776
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 792 TTTTTGCCGGCTCTACGGTGGTTTGACTACAAAGGTTTGGTCAAGAGAGCAAAGAGGATT 851
Query 777 GGAGAAAGGATGGATATTTTATTACAAGGGTTTTTGGATGAGCATAGAGCTAACAAAGAC 836
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GGAGAAAGGATGGATAGTTTATTACAAGGGTTTTTGGATGAGCATAGAGCTAACAAAGAC 911
Query 837 AGATTGGAGTTTAAGAACACTATGATTGGTCATTTGCTTGGTTCTCAAGAAAAAGAGCCT 896
|||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||
Sbjct 912 AGATTGGAGTTTAAGAACACCATGATTGCTCATTTACTTGATTCTCAAGAAAAAGAGCCT 971
Query 897 CATTACTACAGTGATCAAACCATCAAAGGTCTTATACTGATGATGGCAATAGGAGGTACG 956
||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 972 CATAACTACAGTGATCAAACCATCAAAGGTCTTATACTGATGATGGTAGTAGGAGGCACA 1031
Query 957 GATACATCGGCCTTAACCGTAGAATGGGCAATGTCAAATTTATTGAATCATCCACAAGTA 1016
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1032 GATACATCGGCCTTAACCGTGGAATGGGCAATGTCAAATTTATTGAATCATCCACAAATA 1091
Query 1017 CTAGAGACCACGAGAAAAAACATTGATACTCAAATGGAATCATCAAGTACTCGTCAATTG 1076
||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 1092 CTAGAGACCACGAGACAAAACATTGATACTCAAATGGAAACATCAAGTAGTCGTCGTTTG 1151
Query 1077 TTGAAAGAAGAAGATTTGGTGAACATGAACTACTTGAACAATGTTGTGTCCGAGACACTA 1136
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1152 TTGAAAGAAGAAGATTTGGTAAACATGAACTACTTGAAAAATGTTGTGTCGGAGACACTA 1211
Query 1137 AGGCTTTATCCTGTGGCACCACTTATGGTTCCTCATTTGCCATCTTCTGATTGTGTAATT 1196
|| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1212 AGACTTTACCCTGTGGCACCACTTATGGTTCCTCATGTGCCATCTTCTGACTGTGTAATC 1271
Query 1197 GGTGGGTTTGATGTTCCACGTGATACGATCGTGTTGGTTAACTTGTGGGCTATACATCGA 1256
||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GGTGGATTCAACGTTCCACGTGATACGATCGTGTTGGTTAACTTGTGGGCTATACATCGA 1331
Query 1257 GATCCAAGCGTGTGGGATGATCCGACGTCGTTCAAGCCAGAGAGATTTGAAGGGAGGGAT 1316
||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||
Sbjct 1332 GATCCAAGCGTGTGGGATGATCCAACGTCATTTAAGCCGGAGAGATTTGAAGGGAGTGAT 1391
Query 1317 CAGTTTGGACATTACAATGGTAAGATGATGCCCTTTGGGTTAGGGAGACGGGTTTGTCCC 1376
||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||
Sbjct 1392 CAGTTTGGACATTACAATGGTAAAATGATGCCGTTTGGGTTAGGAAGACGGGCTTGTCCT 1451
Query 1377 GGGATGAGTTTGGCTAACCGGGTTGTTGGGTTGTTGTTGGGTTCGATGGTTCAGTGTTTT 1436
||| |||||||||||||||||||||||||||| || |||||||||||| ||||||| |||
Sbjct 1452 GGGTTGAGTTTGGCTAACCGGGTTGTTGGGTTATTATTGGGTTCGATGATTCAGTGCTTT 1511
Query 1437 GAATGGGAAAGTGACTCAGGAGGTCAGGTTGATATGACTGAAGGTCCAGGACTTAGTATG 1496
|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1512 GAGTGGGAAAGCGGCTCAGGAGGTCAGGTTGATATGACTGAAGGTCCAGGACTTAGTTTG 1571
Query 1497 CCTAAGGCTGAACCATTGGTTGTCACGTGCAGACCACGTGAGATGGCTTCCGAGTTGTTG 1556
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1572 CCTAAGGCTGAACCATTGGTTGTCACGTGCAGAACACGTGAGATGGCTTCCGAGTTGTTG 1631
Query 1557 TTCTTCGGATCAGAGCCAAGCAATAAGAATGTCTAGATTGGATTTTGTAAAACTATAAGT 1616
||||||||||||||||||||||||||||||||||||||| |||||| |||| | |||||
Sbjct 1632 TTCTTCGGATCAGAGCCAAGCAATAAGAATGTCTAGATTTGATTTTATAAATTTGTAAGT 1691
Query 1617 TAATACATTTTTACATTATATGCATATGATTCAGTGATTTGGATTATA-CAGCAAAATGG 1675
||||||||| |||||| || ||||||||||||||||| |||| | ||||||||||
Sbjct 1692 TAATACATTATTACATGC-AT--ATATGATTCAGTGATTT--ATTA-AGCAGCAAAATGT 1745
Query 1676 TTGGAGACACTCAttttttttttttGGC 1703
||||||||||| |||||||||||||||
Sbjct 1746 TTGGAGACACTTTTTTTTTTTTTTTGGC 1773
Score = 80.5 bits (43), Expect = 5e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1703 CTTTATTGTAATCATGTAATGTCATATGCAATGTTGGTTGAGA 1745
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 CTTTATTGTAATCATGTAATGTCATATGCAATGTTGGTTGAGA 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86294736855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5