BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490890 Length=541 Score E Sequences producing significant alignments: (Bits) Value AT4G37295.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 776 0.0 > AT4G37295.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17553560-17554105 FORWARD LENGTH=546 Length=546 Score = 776 bits (420), Expect = 0.0 Identities = 504/543 (93%), Gaps = 12/543 (2%) Strand=Plus/Plus Query 1 ATCAATCACCAAAACACATTCATTGTCTTAAACCCTAAACCCCAAGAACCGAACAACCAC 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATCAATCACCAAAACACATTCATTGTCTTAAACCCTAAACCTCAAGAACCGAACAACCAC 60 Query 61 ACCaaaaaaaaTGAGACCATTTGGCTTGATCTTTACGGTCATGTTCTTGGTCTCGGCCTT 120 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACC--AAAAAATGAGACCGGTTGGCTTGATCTTTACGGTCATGTTCTTGGTCTCGGCCTT 118 Query 121 TTCGGAATCAAGAACCGCCGATTGCAGAGTTCTCCTTGGTGGTTCGACGGAGGATATTGA 180 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 119 TTCGGAATCAAGAACCGCGGATTGCAGAGTTCTCCTTGGTGGTTCGACGGAGGAAATCGA 178 Query 181 TCAATCTAAAATTCATGGGGTCGATTTGCGAGGCGAAGACTTATTAGGGGTCGTGATACA 240 ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| Sbjct 179 TCAATCTAAAATTCATGGGGTCGATTTACGAAGTGAAGACTTATTAGGGGTCGTGATACA 238 Query 241 TGGTTATAAGAAGTTAAGGTGGCTCTCTTCGGCTGGAGAGAGGATGCATACAATGGCTTC 300 ||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 239 TGGTTATAAGAAGCTAAGGTGGCTCTCATCGGCCGGGGAGAGGATGCATACAATGGCTTC 298 Query 301 AGGACCGAGCAGGAGAGGTGCTGGTCACTAAAATACTAACCCAAAACAAAACATTATTTC 360 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 299 AGGACCGAGCAGGAGAGGTGCTGGTCACTAAAATACGAACCCAAA-CAAAACATTAT--- 354 Query 361 GTATACTTCGatatttatttagcttaggttatagaattatatttt-catttgttatagat 419 | ||||||||||| ||||||| |||| ||||||| ||||||| ||||| |||||||| Sbjct 355 --A--CTTCGATATTTGTTTAGCTCAGGTCATAGAATCATATTTTTCATTTTTTATAGAT 410 Query 420 tattatatttat-CAGTCGTTAAAGATCAATGTAAAGTTTAGAAGGGTGATATTCTTTGA 478 |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 411 TATTATATTTATTCAGTCGCTAAAGATCCATGTAAAGTTTAGAAGGGTGATATTCTTTGA 470 Query 479 TCATACAATAGTCGGTTTCCTTCTCATAAGCACCAATGTATATTACGTGCCAATAAATTG 538 ||||||||||||||||||||||||||||| ||||||| |||| |||||||| || ||| | Sbjct 471 TCATACAATAGTCGGTTTCCTTCTCATAAACACCAATTTATAGTACGTGCCCATTAATCG 530 Query 539 ATA 541 ||| Sbjct 531 ATA 533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25920819852 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5