BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490890

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37295.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   776    0.0  


> AT4G37295.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, 
leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 
four leaves visible; Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; 
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr4:17553560-17554105 FORWARD 
LENGTH=546
Length=546

 Score =  776 bits (420),  Expect = 0.0
 Identities = 504/543 (93%), Gaps = 12/543 (2%)
 Strand=Plus/Plus

Query  1    ATCAATCACCAAAACACATTCATTGTCTTAAACCCTAAACCCCAAGAACCGAACAACCAC  60
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATCAATCACCAAAACACATTCATTGTCTTAAACCCTAAACCTCAAGAACCGAACAACCAC  60

Query  61   ACCaaaaaaaaTGAGACCATTTGGCTTGATCTTTACGGTCATGTTCTTGGTCTCGGCCTT  120
            |||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACC--AAAAAATGAGACCGGTTGGCTTGATCTTTACGGTCATGTTCTTGGTCTCGGCCTT  118

Query  121  TTCGGAATCAAGAACCGCCGATTGCAGAGTTCTCCTTGGTGGTTCGACGGAGGATATTGA  180
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct  119  TTCGGAATCAAGAACCGCGGATTGCAGAGTTCTCCTTGGTGGTTCGACGGAGGAAATCGA  178

Query  181  TCAATCTAAAATTCATGGGGTCGATTTGCGAGGCGAAGACTTATTAGGGGTCGTGATACA  240
            ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct  179  TCAATCTAAAATTCATGGGGTCGATTTACGAAGTGAAGACTTATTAGGGGTCGTGATACA  238

Query  241  TGGTTATAAGAAGTTAAGGTGGCTCTCTTCGGCTGGAGAGAGGATGCATACAATGGCTTC  300
            ||||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct  239  TGGTTATAAGAAGCTAAGGTGGCTCTCATCGGCCGGGGAGAGGATGCATACAATGGCTTC  298

Query  301  AGGACCGAGCAGGAGAGGTGCTGGTCACTAAAATACTAACCCAAAACAAAACATTATTTC  360
            |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||   
Sbjct  299  AGGACCGAGCAGGAGAGGTGCTGGTCACTAAAATACGAACCCAAA-CAAAACATTAT---  354

Query  361  GTATACTTCGatatttatttagcttaggttatagaattatatttt-catttgttatagat  419
              |  ||||||||||| ||||||| |||| ||||||| ||||||| ||||| ||||||||
Sbjct  355  --A--CTTCGATATTTGTTTAGCTCAGGTCATAGAATCATATTTTTCATTTTTTATAGAT  410

Query  420  tattatatttat-CAGTCGTTAAAGATCAATGTAAAGTTTAGAAGGGTGATATTCTTTGA  478
            |||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  411  TATTATATTTATTCAGTCGCTAAAGATCCATGTAAAGTTTAGAAGGGTGATATTCTTTGA  470

Query  479  TCATACAATAGTCGGTTTCCTTCTCATAAGCACCAATGTATATTACGTGCCAATAAATTG  538
            ||||||||||||||||||||||||||||| ||||||| |||| |||||||| || ||| |
Sbjct  471  TCATACAATAGTCGGTTTCCTTCTCATAAACACCAATTTATAGTACGTGCCCATTAATCG  530

Query  539  ATA  541
            |||
Sbjct  531  ATA  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25920819852


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5