BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490895
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36880.1 | Symbols: CP1 | cysteine proteinase1 | chr4:173744... 1995 0.0
> AT4G36880.1 | Symbols: CP1 | cysteine proteinase1 | chr4:17374458-17376225
REVERSE LENGTH=1410
Length=1410
Score = 1995 bits (1080), Expect = 0.0
Identities = 1303/1405 (93%), Gaps = 38/1405 (3%)
Strand=Plus/Plus
Query 1 ATCCCAAGTATTCCCAGCTATCCAAAACACATAACAATATGGCTCCTTCAACAAAAGTTC 60
|||||||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 8 ATCCCAAGTAATCCTAACTATACAAAACACATAACAATATGGCTCCTTCAACAAAAGTTC 67
Query 61 TCTCTTTACTTCTCTTATATGTCGTCGTTTCATTAGCCTCCGGTGATGAGTCCATCATCA 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 68 TCTCTTTACTTCTCTTATATGTCGTCGTGTCATTAGCCTCCGGTGATGAGTCCATCATCA 127
Query 121 ACGACCATCTCCAACTTCCATCAGACAGCTGGTGGAGAACCGATGAAGAAGTGAGGTCCA 180
|||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 128 ACGACCATCTCCAACTTCCATCGGACGGCAAGTGGAGAACCGATGAAGAAGTGAGGTCCA 187
Query 181 TCTATTTACAATGGTCCGCAGACCACGGGAAAACTAACAACAACAACAACGGTATCATCA 240
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 188 TCTACTTACAATGGTCCGCAGAACACGGGAAAACTAACAACAACAACAACGGTATCATCA 247
Query 241 ACGACCAAGACAAAAGATTCAATATTTTCAAAGACAACTTAAGATTCATTGATCTACACA 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 248 ACGACCAAGACAAAAGATTCAATATTTTCAAAGACAACTTAAGATTCATCGATCTACACA 307
Query 301 ACGAAAAGAACAAGAACGCTACTTACAAGCTTGGTCTCACCAAATTTACCGATCTCACTA 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 ACGAAAACAACAAGAACGCTACTTACAAGCTTGGTCTCACCAAATTTACCGATCTCACTA 367
Query 361 ACGAAGAGTACCGGA-GTTTATATCTCGGGGCAAGAACCGAGCCCGTCCGCCGCATCGCG 419
|||| |||||||| | ||| || |||||||||||||| ||||||| ||||||||||||
Sbjct 368 ACGATGAGTACCGCAAGTTG-TACCTCGGGGCAAGAACTGAGCCCGCCCGCCGCATCGCT 426
Query 420 AAGGCCAAGAATGTCAACCAGAAATACTCAGCCGCAGTAGACGGCAAGGAGGTTCCAGAG 479
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 427 AAGGCCAAGAATGTCAACCAGAAATACTCAGCCGCTGTAAACGGCAAGGAGGTTCCAGAG 486
Query 480 ACGGTTGATTGGAGACTGAAGGGAGCCGTTAACCCCATCAAAGACCAAGGAACTTGCGGA 539
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 487 ACGGTTGATTGGAGACAGAAAGGAGCCGTTAACCCCATCAAAGACCAAGGAACTTGCGGA 546
Query 540 AGTTGTTGGGCGTTTTCGAC-AGCTGCAGCAGTAGAAGGCATAAACAAGATCGTAACAGG 598
|||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct 547 AGTTGTTGGGCGTTTTCGACTA-CTGCAGCAGTAGAAGGTATAAACAAGATCGTAACAGG 605
Query 599 AGAACTCATATCTTTATCAGAACAAGAACTTGTCGACTGCGACAATTCCTACAATCAAGG 658
||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 606 AGAACTCATATCTCTATCAGAACAAGAACTTGTTGACTGCGACAAATCCTACAATCAAGG 665
Query 659 TTGCAACGGCGGTTTGATGGACTACGCTTTTCAATTCATCATGAAAAATGGTGGCTTAAA 718
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TTGCAACGGCGGTTTAATGGACTACGCTTTTCAATTCATCATGAAAAATGGTGGCTTAAA 725
Query 719 AACCGAGAAAGATTATCCTTACCGTGGATTCGGCGGCAAATGCAATTCTTTCTTGAAGAA 778
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 726 CACTGAGAAAGATTATCCTTACCGTGGATTCGGCGGAAAATGCAATTCTTTCTTGAAGAA 785
Query 779 TGCTAAAGTTGTGAGTATTGATGGGTACGAAGATGTTCCTACAAAAGACGAGACGGCGTT 838
| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 786 TTCTAGAGTTGTGAGTATTGATGGGTACGAAGATGTTCCTACTAAAGACGAGACTGCGTT 845
Query 839 GAAGAGAGCAATTTCATTGCAACCGGTTAGTGTAGCTATTGAAGCCGGTGGAAGAATTTT 898
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GAAGAAAGCTATTTCATACCAACCGGTTAGTGTAGCTATTGAAGCCGGTGGAAGAATTTT 905
Query 899 CCAACATTACCAAACCGGAATCTTCACGGGAAATTGTGGTACGAATCTTGATCACGCGGT 958
|||||||||||| | || || || || |||| ||||||||| |||||||||||||||||
Sbjct 906 TCAACATTACCAATCGGGTATTTTTACCGGAAGTTGTGGTACAAATCTTGATCACGCGGT 965
Query 959 GGTTGCGGTCGGGTACGGGTCAGAGAACGGTGTTGACTATTGGATCGTGAGGAACTCTTG 1018
|||||| ||||||||||| |||||||||||||||||||| ||||| || |||||||||||
Sbjct 966 GGTTGCTGTCGGGTACGGATCAGAGAACGGTGTTGACTACTGGATTGTAAGGAACTCTTG 1025
Query 1019 GGGTCCACGTTGGGGTGAGGAAGGTTACATTAGGATGGAGAGAAACTTGGCGGCTTCTAA 1078
||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||
Sbjct 1026 GGGTCCACGTTGGGGTGAGGAAGGTTACATTAGAATGGAGAGAAACTTGGCAGCCTCCAA 1085
Query 1079 ATCCGGTAAGTGTGGGATTGCGGTTGAAGCCTCGTACCCGGTTAAGTACAGCCCAAACCC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 ATCCGGTAAGTGTGGGATTGCGGTTGAAGCCTCGTACCCGGTTAAGTACAGCCCAAACCC 1145
Query 1139 GGTTCGTGGAAGTA-T--CAGCAGTGTTTGAGAATGAAGACGCTCGATAAAAAATATTCG 1195
||||||||||| || | ||||||||||||| ||| ||||||||||||||| | | || |
Sbjct 1146 GGTTCGTGGAAATACTATCAGCAGTGTTTGA-AATCAAGACGCTCGATAAACA-T-TT-G 1201
Query 1196 GGATTCTTATAATTGAATT-AATCTCGTATT---ATTATTGTTTGTATGTATAGTA---- 1247
|||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1202 GGATTCTTATAACTGAATTTAATCTCGTATTGTTATTATTGTTTGTATGTATAGTATTTC 1261
Query 1248 AA-AAG--T---A-------GTTGATTCATCATAAGGATATAAACTTTATAAATCCTTAT 1294
|| || | | |||||||||||||||||||||||| |||||||||||||||
Sbjct 1262 AACAACAATTTCAAAAATTAGTTGATTCATCATAAGGATATAAAATTTATAAATCCTTAT 1321
Query 1295 GTCGATCAATTTCTTTTT-ATTCAAAGAAAGATTG----CTTGTTT-ATGTATTAAGAGA 1348
|||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||
Sbjct 1322 GTCGATCAATTTCTTTTTTATTCAAAGAAAGATTGTTTGCTTGTTTTATGTATTAAGAGA 1381
Query 1349 AATATAATAAAATGATATATTTCTT 1373
|||||||||||||||||||||||||
Sbjct 1382 AATATAATAAAATGATATATTTCTT 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67620134115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5