BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490898
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36910.1 | Symbols: LEJ2, CDCP2 | Cystathionine beta-synthas... 1759 0.0
> AT4G36910.1 | Symbols: LEJ2, CDCP2 | Cystathionine beta-synthase
(CBS) family protein | chr4:17390626-17393339 REVERSE LENGTH=1222
Length=1222
Score = 1759 bits (952), Expect = 0.0
Identities = 1142/1228 (93%), Gaps = 36/1228 (3%)
Strand=Plus/Plus
Query 2 GTTTAGCCATTAAAGTCACAGTCACACTTTCGCTTTTCCCAATACAAACAAGCGGTGACG 61
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 8 GTTTAGCCATTAAAGTCACAGTCACACTTTCGCTTTTCCCAATACGAACAAGCGGTGACG 67
Query 62 CATATCTCCTCCT-CCATCACTCTTTTACTTCCGGCGATCTCTCTCCGACGGCCAATGGA 120
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 CATATCTCCT-GTATCATCACTCTTTTACTTCCGGCGATCTCTCTCCGACGGCCAATGGA 126
Query 121 CGCCGTCCTATACTCTGTTCCACTCTCCTTCACGCGCCTACGCGCATCATCCTCTCCTTC 180
||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 127 CGCCGTCCTTTACTCTGTTCCACTCTCCTTCACTCCCCTACGCGCATCATCCTCTCCTTC 186
Query 181 CTCGCCGTATCTTCTTCCGCCGAGGTTTCTCTCCGTTCAGCCATGTCACAAATTCACCTT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CTCGCCGTATCTTCTTCTGCCGAGGTTTCTCTCCGTTCAGCCATGTCACAAATTCACCTT 246
Query 241 CTCTCGAAGCTTCCCTTCCAAATCCAGGATTCCTTCAGCTTCTTCCGCCGCCGGTTCCAC 300
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 247 CTCTCGAAGCTTCCCTTCCAAATCCCGGATTCCCTCAGCTTCTTCCGCCGCCGGTTCCAC 306
Query 301 GTTGATGAAGAATTCCTCTTCGCCAAGAAGTGGAGTGTACACTGTTGGTGAGTTCATGAC 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GTTGATGACGAATTCCTCTTCGCCAAGAAGTGGAGTGTACACTGTTGGTGAGTTCATGAC 366
Query 361 AAAGAAGGATGACTTGCACGTGGTGAAACCTACGACTACTGTGGATCAAGCTCTGGAACT 420
|||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 367 AAAGAAAGAGGACTTGCACGTGGTGAAACCTACGACTACTGTGGATGAAGCTCTGGAACT 426
Query 421 CCTTGTGGAGAATAGAATTACAGGATTTCCTGTGATAGATGACGACTGGAAATTGGTTGG 480
|||||||||||||||||| || ||||||||||| || || || |||||||||||||||||
Sbjct 427 CCTTGTGGAGAATAGAATCACTGGATTTCCTGTAATTGACGAAGACTGGAAATTGGTTGG 486
Query 481 GCTTGTTTCAGATTATGACTTGTTGGCTTTGGACTCCATATCTGGTAGTGGAAGAACAGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GCTTGTTTCAGATTATGACTTGTTGGCTTTGGACTCCATATCTGGTAGTGGAAGAACAGA 546
Query 541 GAATTCCATGTTCCCTGAGGTTGACAGCACTTGGAAAACTTTCAATGCAGTGCAAAAGCT 600
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 547 AAATTCCATGTTCCCTGAGGTTGACAGCACCTGGAAAACTTTCAATGCTGTGCAAAAGCT 606
Query 601 ACTCAGCAAAACCAATGGGAAGCTTGTTGGAGATTTAATGACACCGGCTCCACTAGTTGT 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 607 ACTCAGCAAAACCAATGGGAAGCTTGTTGGAGATTTAATGACACCAGCTCCACTAGTTGT 666
Query 661 TGAGGAAAAAACCAACCTCGAAGATGCTGCTAAAATATTGCTTGAGACAAAATATCGCCG 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGAGGAAAAAACCAACCTGGAAGATGCTGCTAAAATATTGCTTGAGACAAAATATCGCCG 726
Query 721 GCTCCCTGTGGTAGATTCTGATGGCAAATTGGTCGGTATTATCACAAGAGGAAACGTGGT 780
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 727 GCTCCCTGTGGTAGATTCTGATGGCAAATTGGTTGGTATCATCACAAGAGGAAACGTGGT 786
Query 781 TAGAGCCGCGCTTCAAATAAAGCGTTCTGGTGATAGGAATGCTTGATTAAG--A-TATAT 837
|||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 787 TAGAGCCGCGCTTCAAATAAAGCGCTCTGGTGATAGGAATGCTTGATTAAGGTAGTATAT 846
Query 838 ATCAC-AAAGAAGAAAATAGCTTTGTAGAAGAAAGCAATGATCAAACCTTCTCCAGAGAA 896
|| || ||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 847 AT-ACCAAACAAGAAAATGGCTTTGTAGAGGAAAGCAATGATCAAACATTCTCCAGAGAA 905
Query 897 TAAAAGTGAGAAACCGTGACAATTGTATCATGTATTAGTAGAATAAGAACCATAACTTGT 956
|||||||||||||||| |||||||||| |||||||||| | | ||||| ||||||||| |
Sbjct 906 TAAAAGTGAGAAACCGCGACAATTGTACCATGTATTAG-A-A-TAAGAGCCATAACTTAT 962
Query 957 ATTACAGTTTGCATCGAAGTTAAGCCTGCCTAGTAATCTCGAGAAGAATCAAAGGTAAGT 1016
| ||| |||||| ||||||||| |||| || || ||| ||||| |||||||||||||
Sbjct 963 ACGACATTTTGCAACGAAGTTAAACCTGG-TA--AA-CTCTAGAAGCATCAAAGGTAAGT 1018
Query 1017 -----T-T---TTT---CTATTTTTGCAGAATCAGCTTCTCTGTTTGTTTGATGGGTTAG 1064
| | ||| ||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1019 GCACATCTAACTTTTTGCTATTTTAGCAGAATCAGCTTCTCTGTTTGTTTGATAAGTTAG 1078
Query 1065 GTTATCAGATTCTTTGGGTATTTGATTCTCATCCAATTATGCTTTC-TTA-GA-AAGaaa 1121
|||||||||| |||||||||||||| ||||||||||| |||||||| || || || |||
Sbjct 1079 GTTATCAGATGCTTTGGGTATTTGACTCTCATCCAAT-ATGCTTTCATTTCGAGAA-AAA 1136
Query 1122 aaaaaaCTTGTTTC-CTACTTTCTACATTTGGTTAACCACCAAAGTAACAG-CCTTTT-A 1178
|||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1137 AAAAAA-TTGTTTCAC-ACTTTCTACATTTGGTTAACCACCAAAGTAACAAACCTTTTTA 1194
Query 1179 AGGTATTTTAATTGATTTTGGTTCAACC 1206
||||||||||||||||||||||||||||
Sbjct 1195 AGGTATTTTAATTGATTTTGGTTCAACC 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5