BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490899
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36920.1 | Symbols: AP2, FLO2, FL1 | Integrase-type DNA-bind... 2276 0.0
> AT4G36920.1 | Symbols: AP2, FLO2, FL1 | Integrase-type DNA-binding
superfamily protein | chr4:17400847-17403332 FORWARD LENGTH=1642
Length=1642
Score = 2276 bits (1232), Expect = 0.0
Identities = 1487/1600 (93%), Gaps = 58/1600 (4%)
Strand=Plus/Plus
Query 1 CATT-AAtttttttttttAATTTTCTACCAACCAAAAGCTTTTCTCTTTGGTTTCTCTTA 59
|||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATTAAAGTTTTTATTTT-ATTTTCTACCAACCAAAAGCTTTTCTCTTTGGTTTCTCTTA 59
Query 60 TTTAGCTTCTAACCTTGAGGAGAATCAAACCAGAGGATTGAAGTTTGAACCTTCAAAGAT 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 TTTAGCTTCTAACCTTGAGGAGAATCATACCAGAGGATTGAAGTTTGAACCTTCAAAGAT 119
Query 120 CAAAATCAAGAAAACaaaaaaaaaaaaaaaaaaTGTGGGATCTAAACGACGCACCACACC 179
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 CAAAATCAAGAAACCAAAAAAAAACAAAAAAAATGTGGGATCTAAACGACGCACCACACC 179
Query 180 AAACACTTAGAGAAGAAGAAGAATCTGAAGAGTTTTGTTATTCTTCACCAAGTAAACGGG 239
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAACAC--AAAG-AGAAGAAGAATCTGAAGAGTTTTGTTATTCTTCACCAAGTAAACGGG 236
Query 240 TCGGATCTTTCTCTAATTCAAGTTCCTCTGCTGTTGTCATCGAAGATGGATCCGATGACG 299
| |||||||||||||||||||| || || |||||||| ||||||||||||||||||||||
Sbjct 237 TTGGATCTTTCTCTAATTCAAGCTCTTCAGCTGTTGTTATCGAAGATGGATCCGATGACG 296
Query 300 ATGAACTTAACCGGGTCAGACCCAATAACCCACTTATCACCCATCAGTTCTTCCCTGAGA 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 297 ATGAACTTAACCGGGTCAGACCCAATAACCCACTTGTCACCCATCAGTTCTTCCCTGAGA 356
Query 360 TGGATTCTAACGGCGGTGGAGGAGATGGTGGTGTTGCTTCTGGCTTTCCTCGGGCTCACT 419
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 TGGATTCTAACGGC------------GGTGGTGTTGCTTCTGGCTTTCCTCGGGCTCACT 404
Query 420 GGTTTGGTGTTAAGTTTTGTCAGTCGGATCTAGCCACCGGATCGTCGGCGGGTAAAGCTG 479
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 405 GGTTTGGTGTTAAGTTTTGTCAGTCGGATCTAGCCACCGGATCGTCCGCGGGTAAAGCTA 464
Query 480 CCACCGTAGCCGCTGCCGTGGTGGAGCCGGCGCAGCCGTTGAAAAAGAGCCGGCGTGGAC 539
||| ||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 465 CCAACGTTGCCGCTGCCGTAGTGGAGCCGGCACAGCCGTTGAAAAAGAGTCGGCGTGGAC 524
Query 540 CAAGGTCAAGAAGTTCTCAGTATAGAGGCGTTACGTTTTACCGGCGTACTGGAAGATGGG 599
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 525 CAAGATCAAGAAGTTCTCAGTATAGAGGTGTTACGTTTTACCGGCGTACCGGAAGATGGG 584
Query 600 AATCTCATATTTGGGACTGTGGGAAACAAGTTTACTTAGGTGGATTTGACACTGCTCATG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 AATCTCATATTTGGGACTGTGGGAAACAAGTTTACTTAGGTGGATTTGACACTGCTCATG 644
Query 660 CAGCTGCTCGAGCATATGATAGAGCTGCTATTAAATTCCGTGGAGTAGAAGCGGATATCA 719
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 CAGCAGCTCGAGCATATGATAGAGCTGCTATTAAATTCCGTGGAGTAGAAGCGGATATCA 704
Query 720 ATTTCAACATCGAAGATTATGATGATGACTTGAAACAGATGACCAATTTAACCAAGGAAG 779
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 705 ATTTCAACATCGACGATTATGATGATGACTTGAAACAGATGACTAATTTAACCAAGGAAG 764
Query 780 AGTTCGTACACGTACTTCGCCGACAAAGCACAGGCTTCCCTCGAGGAAGTTCTAAGTATA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 765 AGTTCGTACACGTACTTCGCCGACAAAGCACAGGCTTCCCTCGAGGAAGTTCGAAGTATA 824
Query 840 GAGGTGTTACTTTGCATAAGTGTGGTCGATGGGAAGCTCGAATGGGTCAATTCTTAGGCA 899
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 825 GAGGTGTCACTTTGCATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCA 884
Query 900 AAAAGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGAGCTTACGATA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 AAAAGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGAGCTTACGATA 944
Query 960 AAGCTGCAATCAAATGTAATGGCAAAGACGCCGTGACTAACTTTGATCCGAGTATTTACG 1019
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 945 AAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACG 1004
Query 1020 ACGAGGAACTCAATGCTGAGTCATCAGGGAATCCTACT-C-C-ACAAGATCACAACCTCG 1076
| |||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1005 ATGAGGAACTCAATGCCGAGTCATCAGGGAATCCTACTACTCCACAAGATCACAACCTCG 1064
Query 1077 ATTTGAGTTTGGGAAATTCGGCTAATTCGAAGCATAAGAGTCAAGATATGCGGCTCAAGA 1136
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1065 ATTTGAGCTTGGGAAATTCGGCTAATTCGAAGCATAAAAGTCAAGATATGCGGCTCAGGA 1124
Query 1137 TGACCCAACAACAACAAGATTCTCTCCACTCTAATGAAGTTCTCGGATTAGGTCAAACCG 1196
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1125 TGAACCAACAACAACAAGATTCTCTCCACTCTAATGAAGTTCTTGGATTAGGTCAAACCG 1184
Query 1197 GAATGCTTAACCA-A-T-----TT-----------T--C-GGGCAGCAGCAGCATTGGTG 1235
||||||||||||| | | || | | ||||||||||| |||||||
Sbjct 1185 GAATGCTTAACCATACTCCCAATTCAAACCACCAATTTCCGGGCAGCAGCAACATTGGTA 1244
Query 1236 GCGGAGGCGGATTCTCACTGTTTCCGGTGGCTGAGAACCACCGGTTTGATGATCGGGCCA 1295
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1245 GCGGAGGCGGATTCTCACTGTTTCCGGCGGCTGAGAACCACCGGTTTGATGGTCGGGCCT 1304
Query 1296 CGACGAACCAAGTGTTGACAAATGCTGCAGCATCATCAGGATTCTCTCCTCATCATCATA 1355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1305 CGACGAACCAAGTGTTGACAAATGCTGCAGCATCATCAGGATTCTCTCCTCATCATCACA 1364
Query 1356 ATCAGATTTTTAATTCTACTTCTTCTTCTCATCAAAATTGGCTGCAGACAAATGGCTTCC 1415
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1365 ATCAGATTTTTAATTCTACTTCTACTCCTCATCAAAATTGGCTGCAGACAAATGGCTTCC 1424
Query 1416 AACCTCCTCTCATGAGACCTTCTTGAATCTTT-AT-T----A---TT-AT-AT-ATA-A- 1461
|||||||||||||||||||||||||||||||| || | | || || || ||| |
Sbjct 1425 AACCTCCTCTCATGAGACCTTCTTGAATCTTTTATATTTTTAAGGTTTATTATTATATAA 1484
Query 1462 GaaaaaaaaaaaTGAACCTTTGAA-TCTCCCATATTTTCTTGGTCATTCCATTAATCGTC 1520
|||||| ||||||||||||||||| || |||| || |||||||||||| |||||||| ||
Sbjct 1485 GAAAAACAAAAATGAACCTTTGAAATC-CCCACATGTTCTTGGTCATTTCATTAATCATC 1543
Query 1521 GGCTTATCTTTTGTTTATTG-CCCTTAAAACCTCTTGTTA 1559
||||||| ||||| ||||| ||| |||| ||||||||||
Sbjct 1544 GGCTTATATTTTGCTTATTTTCCCCTAAATCCTCTTGTTA 1583
Score = 62.1 bits (33), Expect = 2e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1561 AAAAATTAATGGAAATCTTTTTCCCTCCATCGG 1593
|||||||||||||||||||||||||||||||||
Sbjct 1599 AAAAATTAATGGAAATCTTTTTCCCTCCATCGG 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5