BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490904
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2278 0.0
> AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17426921-17429765 FORWARD LENGTH=1572
Length=1572
Score = 2278 bits (1233), Expect = 0.0
Identities = 1378/1445 (95%), Gaps = 22/1445 (2%)
Strand=Plus/Plus
Query 1 ATCTTCGCTTGCTTCCTCCTCTAAAGATGAAAAATTAGAGC---A-AG--AGCGAGAGAT 54
||||||||||||||||||||| |||| |||||||||||||| | || || |||||||
Sbjct 1 ATCTTCGCTTGCTTCCTCCTCAAAAGGTGAAAAATTAGAGCGAGAGAGATAGAGAGAGAT 60
Query 55 TTCAAAACGAAAATCCAGAAAAAGGGTC-TGACCAATTTAGGGTATCCTTGTGGgagaga 113
||||||||||||||||||| |||||||| || ||| ||||||| ||||||||||| ||||
Sbjct 61 TTCAAAACGAAAATCCAGAGAAAGGGTCTTG-CCAGTTTAGGGCATCCTTGTGGGTGAGA 119
Query 114 gagaga--gagggatttcaaaagaggaggaagaggaagaagatacgagtgt--gagagat 169
||| || ||| |||||| ||| |||||||||| | |||||||||||||| |||||||
Sbjct 120 GAGCGATTGAGAGATTTC-AAA-AGGAGGAAGA-G--GAAGATACGAGTGTGAGAGAGAT 174
Query 170 ttagagggagagaagaaaagagagatt-tttttGAGTGTATTAGGGTTTCAGTTCCTTTC 228
||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 175 TTAGAGGGAGAGAAG-AAAGAGAGATTCTTTTTGAGTGTGTTAGGGTTTCATTTCCTCTG 233
Query 229 CTGATCTACATTTATCTCTTCTCATGGAACGGAAGCTTGTGGTTTTGGGAATCCCGTGGG 288
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CAGATCTACATTTATCTCTTCTCATGGAACGGAAGCTTGTGGTTTTGGGAATCCCGTGGG 293
Query 289 ATATTGATTCCGATGGGCTTAAGGATTACATGTCAAAATTTGGAGACTTGGAGGATTGTA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ATATTGATTCCGATGGGCTTAAGGATTACATGTCAAAATTTGGAGACTTGGAGGATTGTA 353
Query 349 TTGTCATGAAGGATCGATCAACTGGGAGATCTCGTGGATTTGGATATGTCACTTTTGCTT 408
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 354 TTGTCATGAAGGATCGATCAACTGGAAGATCTCGTGGATTTGGATATGTCACTTTTGCTT 413
Query 409 CAGCTGAAGATGCAAAGAATGCGTTGAAAGGTGAACACTTTTTAGGGAACAGGATCTTGG 468
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 414 CAGCTGAAGATGCAAAGAATGCTTTGAAAGGTGAACACTTTTTAGGGAACAGGATCTTGG 473
Query 469 AAGTAAAAGTGGCTACACCAAAGGAAGAGATGAGACAGCCTGCAAAAAAGGTAACGAGGA 528
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 474 AAGTTAAAGTGGCTACACCAAAGGAAGAGATGAGACAGCCTGCAAAAAAAGTGACGAGGA 533
Query 529 TCTTCGTTGCTCGAATCCCTTCATCAGTCTCTGAATCAGATTTCCGAAGCCATTTTGAGA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TCTTCGTTGCTCGAATCCCTTCATCAGTCTCTGAATCAGATTTCCGAAGCCATTTTGAGA 593
Query 589 GGTATGGGGAAATAACCGACTTATACATGCCTAAGGACCACAACTCGAAGCAACACCGAG 648
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 594 GGTATGGGGAAATAACAGACTTATACATGCCTAAGGACTACAACTCGAAGCAGCACCGAG 653
Query 649 GAATTGGATTTATCACATTCTCTAGTGCTGATTCAGTGGAGGATCTGATGGAGGACACTC 708
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAATAGGGTTTATCACATTCTCTAGTGCTGATTCAGTGGAGGATCTGATGGAGGACACTC 713
Query 709 ATGATCTGGGAGGTACAACAGTTGCTGTTGATCGGGCAACACCAAAAGAGGATGATCATC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 ATGATCTGGGAGGTACAACAGTTGCTGTTGATCGGGCAACACCAAAAGAGGATGATCATC 773
Query 769 CGCCTAGGCCACCGCCAGTGGCTAGAATGTCGCGCCCACCCGTGGCTGTTGCAGGTGGTG 828
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 774 CGCCTAGGCCACCGCCAGTGGCTAGAATGTCGCGCCCACCCGTGGCTATTGCAGGTGG-- 831
Query 829 GATTTGGAGCTCCAGGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGAT 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 -ATTTGGAGCTCCAGGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGAT 890
Query 889 ACGCAGCGCTTGGTGCTCCTACTTTGTATGATAATCCAGCCATGTTTTATGGAAGAGGAG 948
|||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |
Sbjct 891 ACGCAGCGCTTGGTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAAGAGGGG 950
Query 949 AACCAAACACAAGGGGAATAGGAAACAAGATCTTTGTTGGAAGGCTTCCTCAAGAAGCAT 1008
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 951 AACCAACCACAAGGGGAATAGGAAACAAGATCTTTGTTGGACGGCTTCCTCAAGAAGCAT 1010
Query 1009 CCGTTGATGATCTTCGCGAGTATTTTGGGAGATTTGGCCGTATTCAAGATGCTTATATTC 1068
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1011 CCGTTGATGATCTTCGCGATTATTTTGGGAGATTTGGCCATATTCAAGATGCTTATATTC 1070
Query 1069 CAAAGGACCCAAAGAGAAGTGGACATAGAGGTTTTGGATTTGTTACCTTTGCTGAAAATG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CAAAGGACCCAAAGAGAAGTGGACATAGAGGTTTTGGATTTGTTACCTTTGCTGAAAATG 1130
Query 1129 GTGTTGCAGATCGTGTAGCCCGAAGATCTCATGAAATCTGTGGACAAGAGGTTGCAATAG 1188
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1131 GTGTTGCAGATCGTGTAGCCCGAAGATCTCATGAAATCTGTGGACAAGAGGTAGCAATAG 1190
Query 1189 ATTCAGCAACACCTCTTGATGAAGCTGGACCTAGCGCTAGCGGAAGTTCCGTGTTAAGTT 1248
|||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 1191 ATTCAGCAACGCCTCTTGATGAAGCTGGACCTAGCGCTGGCGCAAGTTCCATGTTAAGTT 1250
Query 1249 CTTCTCGTCCTGAATATTTTGGTGGCTATGGAGGTCCAATGCGCACATTTGGTCGAATGT 1308
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1251 CTTCTCGTCCTGAATATTTTGGTGGCTATGGAGGTCCTATGCGCGCATTTGGTCGAATGT 1310
Query 1309 ATGGAGGCATGAGCTTGGACGATTGGGGATATGGAATGCCAAACGCAAGACCATCAAGAT 1368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 ATGGAGGCATGAGCTTGGACGATTGGGGATATGGAATGCCAAACGCAAGACCATCAAGAC 1370
Query 1369 CAGACTGGAGGTACCGGCCATACTAATGTACCAGACCAACATTCCATTAGCTTTGGCTTT 1428
||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 1371 CAGACCGGAGGTACCGGCCATACTAATGCAGCAGACCAACATTTCATTAGCTTTGGCTTT 1430
Query 1429 GTCTT 1433
|||||
Sbjct 1431 GTCTT 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73041792975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5