BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490909
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36988.1 | Symbols: CPuORF49 | conserved peptide upstream op... 1742 0.0
AT4G36990.1 | Symbols: HSF4, HSFB1, AT-HSFB1, ATHSF4 | heat sho... 1742 0.0
> AT4G36988.1 | Symbols: CPuORF49 | conserved peptide upstream
open reading frame 49 | chr4:17440177-17442151 FORWARD LENGTH=1783
Length=1783
Score = 1742 bits (943), Expect = 0.0
Identities = 1156/1252 (92%), Gaps = 42/1252 (3%)
Strand=Plus/Plus
Query 109 AAATAACACTTAACTAGTTTATATA--TTTTAATCACACGGATTAGCTCCGGCGAATTAT 166
||| || |||| | || ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 163 AAAAAAGACTTTA-TA-TTTATTTACTTTTTAATCACACGGATTAGCTCCGGCGAAGTAT 220
Query 167 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 280
Query 227 ACGAAACTCCGATCTCCTCCGTTCTCGTGTTTTTCTCTCTGGCTTTTATTGCTGGGATTG 286
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 281 ACGAAACTCCGATCTTCTCCGTTCTCGTGTTTTCCTCTCTGGCTTTTATTGCTGGGATTG 340
Query 287 GGAATTTCTCACCGCTCTCTTGCTCTTTAGTTGCTAAATCTTTTTCATTTCCAAtctttc 346
|||||||||||||||||||||||| |||||||||| | |||||||| || | | |||||
Sbjct 341 GGAATTTCTCACCGCTCTCTTGCTTTTTAGTTGCTGATTCTTTTTC-CTT-CGA-CTTTC 397
Query 347 ---tt-c-ttc-ttcttcttctcttTTGTGT-TTAGATTATTTTTAGTTTTa-------- 391
|| | || ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 398 TATTTCCAATCTTTCTTCTTCTC-TTTGTGTATTAGATTATTTTTAGTTTTATTTTTCTG 456
Query 392 --aaaaaat-aaaaaaGATCGCCGGAGATGACGGCGGTGACGGCGGCGCAAAGATCTGTA 448
||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 457 TGGTAAAATAAAAAAAGTTCGCCGGAGATGACGGCTGTGACGGCGGCGCAAAGATCAGTT 516
Query 449 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTGGATGATCATAACACAGACGACGTC 508
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 517 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTTGATGATCATAGCACAGACGACGTC 576
Query 509 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTGGTGTGGAAAACAGCAGAGTTTGCTAAA 568
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 577 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTCGTGTGGAAAACAGCAGAGTTTGCTAAA 636
Query 569 GATCTTCTTCCTCAATACTTCAAGCATAACAATTTCTCAAGCTTCATTCGTCAGCTCAAC 628
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 637 GATCTTCTTCCTCAATACTTCAAGCATAATAATTTCTCAAGCTTCATTCGTCAGCTCAAC 696
Query 629 ACTTACGGATTTCGGAAAACTGTACCGGATAAATGGGAATTCGCGAACGATTATTTCCGG 688
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 697 ACTTACGGATTTCGTAAAACTGTACCGGATAAATGGGAATTTGCAAACGATTATTTCCGG 756
Query 689 AGAGGCGGAGAGGATCTGTTGTCGGAGATAAGACGGCGTAAAGCGGTGATTGCCTCAACG 748
|||||||| |||||||||||| |||| ||| ||||||||||| |||||||||| ||||||
Sbjct 757 AGAGGCGGGGAGGATCTGTTGACGGACATACGACGGCGTAAATCGGTGATTGCTTCAACG 816
Query 749 GCGGGGAAATGTGTTGTTGTTGGTTCGCCGTCTGAGTCAAATTC---TGGTGGTGATGAT 805
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 817 GCGGGGAAATGTGTTGTTGTTGGTTCGCCTTCTGAGTCTAATTCTGGTGGTGGTGATGAT 876
Query 806 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTTGAGAAC 865
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 877 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTGGAGAAC 936
Query 866 ATGGTTGCTGATTTATCAGGTGAGAACGAGAAGCTGAAACGTGAAAATAATAACTTGAGC 925
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 937 ATGGTTGCTGATTTATCAGGAGAGAACGAGAAGCTTAAACGTGAAAACAATAACTTGAGC 996
Query 926 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGTGATGAGCTAGTGACGTTCTTGACGGGTCAT 985
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 997 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGCGATGAGCTAGTGACGTTCTTGACGGGTCAT 1056
Query 986 CTGAAAGTCAGACCGGAGCAAATCGATCAGATGATCAAAGGAGGGAAATTCAAACCGGTT 1045
|||||||| |||||||| ||||||||| | |||||||||||||||||||| ||||||||
Sbjct 1057 CTGAAAGTAAGACCGGAACAAATCGATAAAATGATCAAAGGAGGGAAATTTAAACCGGTG 1116
Query 1046 GAATCGGACGAAGAGAGTGAATGCGAAGGTT--G-CGGCGGCGGAGGAGCAGAGGAGGGG 1102
|| || |||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1117 GAGTCTGACGAAGAGAGTGAGTGCGAAGGTTGCGACGGCGGCGGAGGAGCAGAGGAGGGG 1176
Query 1103 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1236
Query 1163 CGGGATGAAAA-ACATTATTTGGTGGGTGGGTCCGGTATGACGGAAATAAAGAACGTGGA 1221
||||||||||| | ||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1237 CGGGATGAAAAGA-ATTATGTGGTGAGTGGGTCCCGTATGACGGAAATAAAGAACGTGGA 1295
Query 1222 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTTTGCAACTAAAAAA-GAGTAGAAGACT 1280
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1296 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTCTGCAACTAAAAAAAGAGTAGAAGACT 1355
Query 1281 GTTCAAACTTCAAACCATCGTGTGACACGTCATCGACGAAGACGaaaaaaaT 1332
|||||||| || | |||||||||||||||||||| ||||||||||||
Sbjct 1356 GTTCAAAC--CAG-C----GTGTGACACGTCATCGACGACGACGAAAAAAAT 1400
Score = 139 bits (75), Expect = 8e-32
Identities = 102/114 (89%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 1546 tttatttttgatttattttctttGC-A--AGTAGTAGGTGATTTCCGTGTTTTTACGTAA 1602
||||| ||||||| ||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 1667 TTTATGTTTGATTGATTTTCTTTGCAAGTAGTAGTAGGTGGTTTCCGTGTTTTTACGTAA 1726
Query 1603 TCCGTTGAATATTTT-CCATCAAAATTGTCTTTGAAAAAAGTCACAAAAACATT 1655
||||||||||||||| || || ||||||||||| | |||||||||| |||||||
Sbjct 1727 TCCGTTGAATATTTTTCCCTCGAAATTGTCTTT-ATAAAAGTCACAGAAACATT 1779
Score = 65.8 bits (35), Expect = 1e-09
Identities = 45/49 (92%), Gaps = 3/49 (6%)
Strand=Plus/Plus
Query 1352 GTTATT-AAAA-GTGAAGAAGGTCCAGAAGGATCAACGCAAATATTTAA 1398
||| || |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1448 GTT-TTAAAAAGGTGAAGAAGGTCCAGAAGGATCAACGCAAATATATAA 1495
> AT4G36990.1 | Symbols: HSF4, HSFB1, AT-HSFB1, ATHSF4 | heat shock
factor 4 | chr4:17440177-17442151 FORWARD LENGTH=1783
Length=1783
Score = 1742 bits (943), Expect = 0.0
Identities = 1156/1252 (92%), Gaps = 42/1252 (3%)
Strand=Plus/Plus
Query 109 AAATAACACTTAACTAGTTTATATA--TTTTAATCACACGGATTAGCTCCGGCGAATTAT 166
||| || |||| | || ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 163 AAAAAAGACTTTA-TA-TTTATTTACTTTTTAATCACACGGATTAGCTCCGGCGAAGTAT 220
Query 167 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GGTCGTCGTCTTCATCTTCTTCCTCCATCATCAGATTTTTCCTTAAATGGAAGAAACCAA 280
Query 227 ACGAAACTCCGATCTCCTCCGTTCTCGTGTTTTTCTCTCTGGCTTTTATTGCTGGGATTG 286
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 281 ACGAAACTCCGATCTTCTCCGTTCTCGTGTTTTCCTCTCTGGCTTTTATTGCTGGGATTG 340
Query 287 GGAATTTCTCACCGCTCTCTTGCTCTTTAGTTGCTAAATCTTTTTCATTTCCAAtctttc 346
|||||||||||||||||||||||| |||||||||| | |||||||| || | | |||||
Sbjct 341 GGAATTTCTCACCGCTCTCTTGCTTTTTAGTTGCTGATTCTTTTTC-CTT-CGA-CTTTC 397
Query 347 ---tt-c-ttc-ttcttcttctcttTTGTGT-TTAGATTATTTTTAGTTTTa-------- 391
|| | || ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 398 TATTTCCAATCTTTCTTCTTCTC-TTTGTGTATTAGATTATTTTTAGTTTTATTTTTCTG 456
Query 392 --aaaaaat-aaaaaaGATCGCCGGAGATGACGGCGGTGACGGCGGCGCAAAGATCTGTA 448
||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 457 TGGTAAAATAAAAAAAGTTCGCCGGAGATGACGGCTGTGACGGCGGCGCAAAGATCAGTT 516
Query 449 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTGGATGATCATAACACAGACGACGTC 508
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 517 CCGGCGCCGTTTTTAAGCAAAACGTATCAGCTAGTTGATGATCATAGCACAGACGACGTC 576
Query 509 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTGGTGTGGAAAACAGCAGAGTTTGCTAAA 568
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 577 GTTTCATGGAACGAAGAAGGAACAGCTTTTGTCGTGTGGAAAACAGCAGAGTTTGCTAAA 636
Query 569 GATCTTCTTCCTCAATACTTCAAGCATAACAATTTCTCAAGCTTCATTCGTCAGCTCAAC 628
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 637 GATCTTCTTCCTCAATACTTCAAGCATAATAATTTCTCAAGCTTCATTCGTCAGCTCAAC 696
Query 629 ACTTACGGATTTCGGAAAACTGTACCGGATAAATGGGAATTCGCGAACGATTATTTCCGG 688
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 697 ACTTACGGATTTCGTAAAACTGTACCGGATAAATGGGAATTTGCAAACGATTATTTCCGG 756
Query 689 AGAGGCGGAGAGGATCTGTTGTCGGAGATAAGACGGCGTAAAGCGGTGATTGCCTCAACG 748
|||||||| |||||||||||| |||| ||| ||||||||||| |||||||||| ||||||
Sbjct 757 AGAGGCGGGGAGGATCTGTTGACGGACATACGACGGCGTAAATCGGTGATTGCTTCAACG 816
Query 749 GCGGGGAAATGTGTTGTTGTTGGTTCGCCGTCTGAGTCAAATTC---TGGTGGTGATGAT 805
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 817 GCGGGGAAATGTGTTGTTGTTGGTTCGCCTTCTGAGTCTAATTCTGGTGGTGGTGATGAT 876
Query 806 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTTGAGAAC 865
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 877 CACGGTTCAAGCTCCACGTCATCACCCGGTTCGTCGAAGAATCCTGGTTCGGTGGAGAAC 936
Query 866 ATGGTTGCTGATTTATCAGGTGAGAACGAGAAGCTGAAACGTGAAAATAATAACTTGAGC 925
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 937 ATGGTTGCTGATTTATCAGGAGAGAACGAGAAGCTTAAACGTGAAAACAATAACTTGAGC 996
Query 926 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGTGATGAGCTAGTGACGTTCTTGACGGGTCAT 985
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 997 TCGGAGCTCGCGGCGGCGAAGAAGCAGCGCGATGAGCTAGTGACGTTCTTGACGGGTCAT 1056
Query 986 CTGAAAGTCAGACCGGAGCAAATCGATCAGATGATCAAAGGAGGGAAATTCAAACCGGTT 1045
|||||||| |||||||| ||||||||| | |||||||||||||||||||| ||||||||
Sbjct 1057 CTGAAAGTAAGACCGGAACAAATCGATAAAATGATCAAAGGAGGGAAATTTAAACCGGTG 1116
Query 1046 GAATCGGACGAAGAGAGTGAATGCGAAGGTT--G-CGGCGGCGGAGGAGCAGAGGAGGGG 1102
|| || |||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1117 GAGTCTGACGAAGAGAGTGAGTGCGAAGGTTGCGACGGCGGCGGAGGAGCAGAGGAGGGG 1176
Query 1103 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 GTAGGTGAAGGATTGAAATTGTTTGGGGTGTGGTTGAAAGGAGAGAGAAAAAAGAGGGAC 1236
Query 1163 CGGGATGAAAA-ACATTATTTGGTGGGTGGGTCCGGTATGACGGAAATAAAGAACGTGGA 1221
||||||||||| | ||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1237 CGGGATGAAAAGA-ATTATGTGGTGAGTGGGTCCCGTATGACGGAAATAAAGAACGTGGA 1295
Query 1222 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTTTGCAACTAAAAAA-GAGTAGAAGACT 1280
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1296 CTTTCACGCGCCGTTGTGGAAAAGCAGCAAAGTCTGCAACTAAAAAAAGAGTAGAAGACT 1355
Query 1281 GTTCAAACTTCAAACCATCGTGTGACACGTCATCGACGAAGACGaaaaaaaT 1332
|||||||| || | |||||||||||||||||||| ||||||||||||
Sbjct 1356 GTTCAAAC--CAG-C----GTGTGACACGTCATCGACGACGACGAAAAAAAT 1400
Score = 139 bits (75), Expect = 8e-32
Identities = 102/114 (89%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 1546 tttatttttgatttattttctttGC-A--AGTAGTAGGTGATTTCCGTGTTTTTACGTAA 1602
||||| ||||||| ||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 1667 TTTATGTTTGATTGATTTTCTTTGCAAGTAGTAGTAGGTGGTTTCCGTGTTTTTACGTAA 1726
Query 1603 TCCGTTGAATATTTT-CCATCAAAATTGTCTTTGAAAAAAGTCACAAAAACATT 1655
||||||||||||||| || || ||||||||||| | |||||||||| |||||||
Sbjct 1727 TCCGTTGAATATTTTTCCCTCGAAATTGTCTTT-ATAAAAGTCACAGAAACATT 1779
Score = 65.8 bits (35), Expect = 1e-09
Identities = 45/49 (92%), Gaps = 3/49 (6%)
Strand=Plus/Plus
Query 1352 GTTATT-AAAA-GTGAAGAAGGTCCAGAAGGATCAACGCAAATATTTAA 1398
||| || |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1448 GTT-TTAAAAAGGTGAAGAAGGTCCAGAAGGATCAACGCAAATATATAA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81776687805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5