BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490911

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37010.2 | Symbols: CEN2 | centrin 2 | chr4:17444309-1744561...   856    0.0  


> AT4G37010.2 | Symbols: CEN2 | centrin 2 | chr4:17444309-17445615 
FORWARD LENGTH=757
Length=757

 Score =  856 bits (463),  Expect = 0.0
 Identities = 531/563 (94%), Gaps = 8/563 (1%)
 Strand=Plus/Plus

Query  49   GGCGAATTACATGTTC-GAAGCAGCACAGCTTAGAAGAGGTCTAAAACCTAAAGGAAAGA  107
            ||||||||||||| || |||||||||||||| |||||||||||||| |||||||| ||||
Sbjct  9    GGCGAATTACATG-TCGGAAGCAGCACAGCTCAGAAGAGGTCTAAAGCCTAAAGGGAAGA  67

Query  108  CTTATGGGTTGACCAATCAGAAGAGACGAGAGATCAGAGAGATATTTGATCTTTTCGACA  167
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  68   CTTATGGGTTGACCAATCAGAAGAGACGAGAGATCAGAGAGATCTTTGATCTTTTCGACA  127

Query  168  TAGACGGTTCAGGTAGCATCGATGCTAGCGAGCTCAACGTTGCTATGAGGTCTCTTGGAT  227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  128  TAGACGGTTCAGGTAGCATCGATGCTAGCGAGCTCAACGTTGCTATGAGGTCTCTTGGAT  187

Query  228  TTGAGATGAATAATGAGCAAATAAACGAATTGATGGCAGAAGTAGATAAAAACCAAAGTG  287
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  188  TTGAGATGAATAATCAGCAAATAAACGAATTGATGGCAGAAGTAGATAAAAACCAAAGTG  247

Query  288  GAGCCATAGATTTCGAGGAATTTGTGCATATGATGACAACTAAATTCGGAGAACGAGAGT  347
            |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct  248  GAGCCATAGATTTCGACGAATTTGTGCATATGATGACAACCAAATTCGGAGAACGAGACT  307

Query  348  CCATAGATGAATTGTCTAAGGCGTTTAAGATCATTGACCATGACAATAATGGGAAGATTT  407
            ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  308  CCATAGACGAATTGTCTAAGGCGTTTAAGATCATTGACCACGACAATAATGGGAAGATTT  367

Query  408  CACCTCGTGATATAAAGGTGATTGCTAAAGAATTGGGAGAAAATTTCACAGATAATGATA  467
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  368  CACCTCGTGATATAAAGATGATTGCTAAAGAATTGGGAGAAAATTTCACAGATAATGATA  427

Query  468  TTGAAGAAATGATCGAAGAAGCAGACCGTGACGAAGATGGAGAAGTTAACTTCGAGGAGT  527
            | |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  428  TAGAAGAAATGATCGAAGAAGCAGACCGTGACAAAGATGGAGAAGTTAACTTGGAGGAGT  487

Query  528  TCATGAAGATGATGAAGAGGACTTCTTACGGCTAAATGTTAATTaaaaaaaaGTTATGGT  587
            ||||||||||||||||||| || |||||||||||| | | ||| ||  |   || |||||
Sbjct  488  TCATGAAGATGATGAAGAGAACCTCTTACGGCTAAGTATAAATCAATTA---GTAATGGT  544

Query  588  TGTGGATA-T-TT-GTTAATCAC  607
            |||| ||| | || |||||||||
Sbjct  545  TGTGAATAATATTTGTTAATCAC  567



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32250322374


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5