BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490916
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37050.1 | Symbols: PLP4, PLA V, AtPLAIVC | PATATIN-like pro... 1790 0.0
AT4G37040.1 | Symbols: MAP1D | methionine aminopeptidase 1D | c... 89.8 7e-17
> AT4G37050.1 | Symbols: PLP4, PLA V, AtPLAIVC | PATATIN-like protein
4 | chr4:17457135-17459770 REVERSE LENGTH=1541
Length=1541
Score = 1790 bits (969), Expect = 0.0
Identities = 1159/1249 (93%), Gaps = 19/1249 (2%)
Strand=Plus/Plus
Query 132 TAC-AGAGAGAACAGTCGCTTGTCTTCCTCCTTCTTACGGACAACTTGTCACCATTCTTA 190
||| ||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 184 TACAAGATAGAACAGTTGCTTGTCTTCCTCCTTCGTACGGACAACTTGTGACCATTCTTA 243
Query 191 GCATCGATGGTGGTGGGATCCGTGGGATCATTCCCGGCACAGTCTTGGCTTACCTCGAAT 250
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 244 GCATCGATGGTGGTGGAATCCGTGGGATCATTCCCGGCACAATCTTAGCTTACCTTGAAT 303
Query 251 CACAACTGCAGGAATTGGATGGTGAGGAGGCAAGGCTTGTAGATTATTTCGATGTCATCT 310
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 304 CACAACTTCAGGAATTGGATGGTGAGGAGGCAAGGCTTGTGGATTATTTCGATGTCATCT 363
Query 311 CAGGGACAAGCACCGGAGGTTTGATAGTGGCGATGTTGACCGCACAAGACGAAGACCAAA 370
|||| ||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 364 CAGGAACAAGCACCGGAGGTTTGATAGTGGCGATGTTGACCG--C---AC-AAGACCAAA 417
Query 371 GCGATGGCCATAGCCGCACCCGCAACCGTCCTTTGTTTGAGGCCAAAGAAATCGTTCCTT 430
||| |||||||||||||| | ||||||| |||||||||||||||||||||||||| ||||
Sbjct 418 GCGGTGGCCATAGCCGCAACAGCAACCGCCCTTTGTTTGAGGCCAAAGAAATCGTCCCTT 477
Query 431 TTTATGTCAAACATTCTCCCAAAATCTTCCCACAGCCACGAGGG--A-TCTCTGGTTGGG 487
||||| ||||||| || ||||||||||| ||||||||||||||| | ||| ||||||||
Sbjct 478 TTTATCTCAAACACTCACCCAAAATCTTTCCACAGCCACGAGGGATATTCTGTGGTTGGG 537
Query 488 GTGAAAACTTGGTGAGACTTGTACGAGGACCCAAGTTCAACGGGAAATACCTTCATGAAT 547
|||||| | | |||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 538 GTGAAACCATAGTGAGACTTGTAGGAGGACCCAAGTTCAACGGTAAATACCTTCATGACT 597
Query 548 TAGTTGAAGGTTTCTTGGGCGACAGAAAACTATCTCAATCTTTGACAAACGTTGTCATAC 607
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 598 TAGTTGAAGGTTTCTTGGGCGACACAAAATTAACTCAATCTTTGACAAACGTTGTCATAC 657
Query 608 CTTGCTTTGACATCAAGAAACTCCAACCAGTTATCTTCTCTTCTTACCAGGCGGTGAATA 667
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTTGCTTCGACATCAAGAAACTCCAACCAGTTATCTTCTCTTCTTACCAGGCGGTGAATA 717
Query 668 ATCAAGCTATGAACGCGAAACTATCAGACATATGTATAAGCACATCTGCCGCACCAACTT 727
|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 718 ATCAAGCTATGAACGCAAAACTATCAGACATATGTATAAGTACATCTGCGGCACCAACTT 777
Query 728 ATTTTCC-GGCTCATCGGTTCACCAACGAAGACAGTGAAGGGAAA-AAACATGAATTCAA 785
|||||| ||||||||| |||||||| |||||||||||||| || ||||||||||||||
Sbjct 778 -TTTTCCCGGCTCATCGATTCACCAATGAAGACAGTGAAGG-AATTAAACATGAATTCAA 835
Query 786 CCTCATTGATGGTGGTATCGCTGCCAATAACCCGACGTTATGTGCTATTGCGGAAGTGAC 845
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 836 CCTCATTGATGGTGGCATCGCTGCCAATAACCCGACGTTATGTGCCATTGCGGAAGTGAC 895
Query 846 AAAGCAGATAATTAAGAAGAATCCAGCAATGGGAGACATAAGCCCATTGGATTTTACGAG 905
||| |||||||| ||||||||||| | ||||||||| ||||||||||| |||||||||||
Sbjct 896 AAAACAGATAATAAAGAAGAATCCTGTAATGGGAGATATAAGCCCATTAGATTTTACGAG 955
Query 906 GTTTTTGGTGATATCGATTGGGACAGGTTCGATTAAG-AATCAAGAAAAGTACAATGCGA 964
|||| ||||||||||||| || |||||||| || ||| |||||||| |||||||||||||
Sbjct 956 GTTTCTGGTGATATCGATAGGTACAGGTTCCAT-AAGGAATCAAGAGAAGTACAATGCGA 1014
Query 965 AAATGGCGTCGAAATGGGGATTGATCTGTTGGATCATTGAAAATGGATCAACTCCAATTC 1024
||||||| ||||||||||||||||| |||||| || |||||| |||||||||||||||||
Sbjct 1015 AAATGGCATCGAAATGGGGATTGATGTGTTGGGTCTTTGAAAGTGGATCAACTCCAATTC 1074
Query 1025 TTGACTGTTACAGTGAAGCAATACATGACATGGTTGACTACCAAAGCTCTGTCGTCTTTC 1084
|||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 1075 TTGATTGTTACAGTGAAGCTATTCATGACATGGTTGATTACCAAAGCTCTGTCGTCTTTC 1134
Query 1085 AAGCTCTTCGTTCCGAGAAGAATTATTTACGTATCGATGACGATTCGTTGAAGGGTGACT 1144
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1135 AAGCTCTTCGTTCCGAGAAGAATTATTTACGTATCGATGATGATTCGTTGAAGGGTGACT 1194
Query 1145 TAGGTTCGGTGGACATTTCGACAGAAAAGAACATGGAAGGTCTTGTTGAAGTTGGTGAAG 1204
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TAGGTTCAGTGGACATATCAACAGAAAAGAACATGGAAGGTCTTGTTGAAGTTGGTGAAG 1254
Query 1205 CTTTATTGAAGAAGAGAGTCTCTCGTGTCAATCTCGAAA-CTGGCCATTATCAACCTATC 1263
||||||| ||||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1255 CTTTATTAAAGAAAAGAGTCTCTCGTGTCAATCTCGAAAGC-GGCCATTATCAACCTATT 1313
Query 1264 TCTGAAAATGTGACTAATGAAGAAGCTCTCAAAAGGTTTGCAAAGGTTCTGTCAGAAGAA 1323
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1314 TCCGAAAATGTGACTAATGAAGAAGCTCTCAAAAGGTTTGCAAAAGTTCTGTCAGAAGAA 1373
Query 1324 AGGAAACTCAGGGAATCAAGATCTCCTAAACTCAAGATCTGAATTTTTT 1372
||||| ||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 1374 AGGAAGCTCAGAGAATCAAGATCTCCTAAACTCAAGATATGA-TTTTTT 1421
Score = 196 bits (106), Expect = 4e-49
Identities = 132/144 (92%), Gaps = 4/144 (3%)
Strand=Plus/Plus
Query 1 ATCACATTTATCACCATCTCTATCTTG-AAAGGAGaaaaaaaaT-ATTAATCACTAACCA 58
||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||| |
Sbjct 1 ATCACATTTATCACCATCTCTATCTTGAAAAGGAG-AAATAAATAATTAATCACTAAGCG 59
Query 59 AAATAGATTTGATC-GAAGTTATACAAATAAACCTTGATTGAGATTATAAAGGAGAAGAG 117
||| |||||||||| |||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 60 AAAGAGATTTGATCTAAAGTAATACAAATAAACCTTGATTGAGATTGTAAAGGAGAAGAG 119
Query 118 TGTAAAAGCATGGATACAGAGAGA 141
| ||||||||||||||||||||||
Sbjct 120 TTTAAAAGCATGGATACAGAGAGA 143
Score = 89.8 bits (48), Expect = 7e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1388 TGCTTGTGAGCAAAAGAATATTTGAATAAGAATATGATTCTTACATACCTT 1438
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1491 TGCTTGTGAGCAAAACAATATTTGAATAAGAATATGATTCTTACATACCTT 1541
> AT4G37040.1 | Symbols: MAP1D | methionine aminopeptidase 1D |
chr4:17455139-17457357 FORWARD LENGTH=1361
Length=1361
Score = 89.8 bits (48), Expect = 7e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 1388 TGCTTGTGAGCAAAAGAATATTTGAATAAGAATATGATTCTTACATACCTT 1438
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1189 TGCTTGTGAGCAAAACAATATTTGAATAAGAATATGATTCTTACATACCTT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5