BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490917
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37070.2 | Symbols: PLP1, PLA IVA, AtPLAIVA | Acyl transfera... 1845 0.0
AT4G37060.2 | Symbols: PLP5 | PATATIN-like protein 5 | chr4:174... 1652 0.0
> AT4G37070.2 | Symbols: PLP1, PLA IVA, AtPLAIVA | Acyl transferase/acyl
hydrolase/lysophospholipase superfamily protein |
chr4:17464785-17467109 REVERSE LENGTH=1427
Length=1427
Score = 1845 bits (999), Expect = 0.0
Identities = 1189/1282 (93%), Gaps = 8/1282 (1%)
Strand=Plus/Plus
Query 1 CTCAAAAGAAGATCGATCAACCAATATGGAGAACGACTCGACCAT-CAAGAAAAACAAAC 59
||||||||||||||||||||| | |||||||||| | ||| || | ||||||||||||||
Sbjct 27 CTCAAAAGAAGATCGATCAACTATTATGGAGAACAAATCG-CCCTCCAAGAAAAACAAAC 85
Query 60 CGCCATCGTGCGGCTCACTCGTAACCATCCTCAGCCTCGATGGTGGTGGAGTCAGAGGAA 119
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 86 CGCCATCGTGCGGATCACTCGTAACCATCCTCAGCCTTGATGGTGGTGGAGTCAGAGGAA 145
Query 120 TCATCGCCGGAGTAATCCTTGCCTATCTCGAAAAACAACTTCAGGAACTCGATGGAGAAA 179
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 146 TCATCGCCGGAGTAATCCTTGCCTTTCTCGAAAAACAACTTCAGGAACTCGATGGAGAAG 205
Query 180 ACGTGAGGCTAGCTGATTATTTCGACGTGATAGCTGGAACTAGCACCGGTGGTCTTGTGA 239
| | |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 206 AGGCGAGGCTTGCGGATTACTTCGACGTGATAGCTGGAACTAGCACCGGTGGTCTTGTGA 265
Query 240 CGGCGATGTTGACTGCACCGGACGGGACTGGTCGACCTCGTTACGCGGCCAAAGACATTG 299
||||||||||||||| |||||||| ||| |||||||||| || |||||| ||||||||||
Sbjct 266 CGGCGATGTTGACTGTACCGGACGAGACCGGTCGACCTCATTTCGCGGCTAAAGACATTG 325
Query 300 TGCCGTTTTACCTTGAACATTGTCCCAAGATATTTCCCCAGCCCACAGGCGTGCTTGCTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TGCCGTTTTACCTTGAACATTGTCCCAAGATATTTCCCCAGCCCACAGGCGTGCTTGCTC 385
Query 360 TGTTACCGAAGCTTCCAAAGCTTCTGTCTGGTCCAAAGTACAGCGGAAACTATCTGCGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 386 TGTTACCGAAGCTTCCAAAGCTTCTGTCTGGTCCAAAGTACAGCGGAAAGTATCTGCGAA 445
Query 420 CTCTAGTTG-GTACGCTTCTTGGAGAGACAAAACTTCACCAGACACTCACAAACATTGTT 478
||| | | ||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 446 ATCTTCT-GAGTAAGCTTCTTGGAGAGACAAGACTTCACCAGACCCTCACAAACATTGTT 504
Query 479 ATACCTACCTTCGACATCAAGACACTTCAACCCACTTTTTTCTCCTCTTACCAGGC-GTT 537
|||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| | |||
Sbjct 505 ATACCTACCTTCGATATCAAGAAACTTCAACCCACTATTTTCTCCTCTTACCAG-CTGTT 563
Query 538 GGCTGACCCTAGCTTGAACGTCAAGGTATCAGACATATGCCTCGGCACATCAGCTGCTCC 597
|| ||||||||||||| | ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 564 GGTTGACCCTAGCTTGGATGTCAAGGTATCAGACATATGCATCGGCACTTCAGCTGCTCC 623
Query 598 CACTTTCTTTCCTGCTCATTACTTTTCCATCGAAGACAGTCAAGGAAAGACTAGGGAGTT 657
||||||||||||| | ||||||||||||| ||||||||||||||| || | | ||||||
Sbjct 624 CACTTTCTTTCCTCCCCATTACTTTTCCAACGAAGACAGTCAAGGCAATAAGACGGAGTT 683
Query 658 TAACCTCGTTGATGGCGCGGTTACTGCTAATAACCCGACTTTGGTGGCCATCACTGCCGT 717
||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 684 TAATCTCGTTGATGGCGCGGTTACTGCTAATAACCCGACTTTGGTGGCCATGACAGCTGT 743
Query 718 GTCAAAGCAGATTGTGAAGAATAATCCTGATATGGGTACGCTCAAGCCGTTAGGTTACGA 777
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 744 GTCTAAGCAGATTGTGAAGAATAATCCTGATATGGGTAAGCTCAAGCCGTTAGGTTTCGA 803
Query 778 CCAGTTTCTCGTTATATCGATAGGAACAGGATCTACaaaaaaaGAAGAGAAGTACAGCGC 837
|| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 804 CCGGTTTCTCGTTATATCGATAGGAACAGGATCAACAAAAAGGGAAGAGAAGTACAGCGC 863
Query 838 AAAGAAGGCTGCAAAATGGGGAATCATATCTTGGTTATATGAAGATGGATCTACTCCAAT 897
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 864 AAAAAAGGCTGCAAAATGGGGGATCATATCTTGGTTATATGACGATGGATCTACTCCGAT 923
Query 898 ATTAGACATTACCATGGAATCAAGCCGCGACATCG-TCCATTATCATAGCTCTGTTTTGT 956
||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||
Sbjct 924 ATTAGACATTACCATGGAATCAAGCCGCGACAT-GATCCATTATCACAGCTCTGTTGTGT 982
Query 957 TTAAAGCCCTAGAATCTGAAGACAAGTACCTCAGAATCGATGATGATACATTGGAAGGAG 1016
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 983 TTAAAGCCCTACAATCTGAAGACAAGTACCTCCGAATCGATGATGATACATTGGAAGGAG 1042
Query 1017 ATGTAAGCAATATGGATCTAGCGACAAAGTCTAACTTAGAGAATCTTAAAAAGATTGGAG 1076
||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1043 ATGTAAGCACTATGGATCTAGCGACAAAGTCTAACTTGGAGAATCTTCAAAAGATTGGAG 1102
Query 1077 AGAAGATGCTGACAAACAGAGTCGCGCAAATGAACATCGACACTGGTGCATATGAACCTA 1136
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1103 AGAAGATGCTGACAAACAGAGTCATGCAAATGAACATCGACACTGGTGTATATGAACCTG 1162
Query 1137 TTACTGAAAATATTACCAATGATGAACAACTAAAGAGGTTTGCGAAAATCCTCTCGGACG 1196
|| ||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||
Sbjct 1163 TTGCTGAAAATATTACCAATGATGAACAGCTAAAGAGGTATGCAAAAATTCTCTCGGACG 1222
Query 1197 AAAGGAAATTAAGGAGACTGAGGAGCGACACGATGATGAAAGATCCACCAAACGGATCAC 1256
||||||||||||||||||| || |||||||| ||||| |||||| || |||| | |||||
Sbjct 1223 AAAGGAAATTAAGGAGACTAAGAAGCGACACAATGATTAAAGATTCATCAAATGAATCAC 1282
Query 1257 CATAGATCAAATAAAAGGAAAT 1278
| |||| ||||||||||||||
Sbjct 1283 AAGAGATAAAATAAAAGGAAAT 1304
> AT4G37060.2 | Symbols: PLP5 | PATATIN-like protein 5 | chr4:17461366-17463734
REVERSE LENGTH=1545
Length=1545
Score = 1652 bits (894), Expect = 0.0
Identities = 1074/1161 (93%), Gaps = 11/1161 (1%)
Strand=Plus/Plus
Query 164 GAACTCGATGGAGAAAACGTGAGGCTAGCTGATTATTTCGACGTGATAGCTGGAACTAGC 223
||||| ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 232 GAACTAGATGGAGAACACGTGAGGGTAGCTGATTATTTCGACGTGATAGCCGGAACTAGC 291
Query 224 ACCGGTGGTCTTGTGACGGCGATGTTGACTGCACCGGACG-GGACTGGTCGACCTCGTTA 282
|||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||
Sbjct 292 ACCGGTGGTCTTGTGACGGCGATGTTGACTGCACCGGACGAGAAC-GGTAGACCTCGTTT 350
Query 283 CGCGGCCAAAGACATTGTGCCGTTTTACCTTGAACATTGTCCCAAGATATTTCCCCAGCC 342
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CGCGGCTAAAGAAATTGTGCCGTTTTACCTTGAACATTGTCCCAAGATATTTCCCCAGCC 410
Query 343 CACAGGCGTGCTTGCTCTGTTACCGAAGCTTCCAAAGCTTCTGTCTGGTCCAAAGTACAG 402
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 411 CACAGGCGTGCTTGCTCTGTTACCGAAGCTTCCTAAGCTTCTGTCTGGTCCAAAGTACAG 470
Query 403 CGGAAACTATCTGCGAACT-CTAGTTGGTACGCTTCTTGGAGAGACAAAACTTCACCAGA 461
||||||||||||||||||| | | |||||| ||||||||||||||||||||||| |||||
Sbjct 471 CGGAAACTATCTGCGAACTAC-ACTTGGTAAGCTTCTTGGAGAGACAAAACTTCGCCAGA 529
Query 462 CACTCACAAACATTGTTATACCTACCTTCGACATCAAGACACTTCAACCCACTTTTTTCT 521
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 530 CACTCACAAACGTTGTTATACCTACCTTCGACATCAAGACACTTCAACCCACTATTTTCT 589
Query 522 CCTCTTACCAGGCGTTGGCTGACCCTAGCTTGAACGTCAAGGTATCAGACATATGCCTCG 581
| ||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||| |||
Sbjct 590 CATCTTACCAGGCGTTGACTGATCCTAGCTTGGACGTCAAGGTATCGGACATATGCATCG 649
Query 582 GCACATCAGCTGCTCCCACTTTCTTTCCTGCTCATTACTTTTCCATCGAAGACAGTCAAG 641
||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||
Sbjct 650 GCACATCAGCTGCTCCCACTTACTTTCCTCCTTATTACTTTTCCAACGAAGACAGTCAAG 709
Query 642 GAAAGACTAGGGAGTTTAACCTCGTTGATGGCGCGGTTACTGCTAATAACCCGACTTTGG 701
| ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 710 GCAAGACTAGGCATTTTAACCTCGTTGATGGCGGGGTTACTGCTAATAACCCGACTTTGG 769
Query 702 TGGCCATCACTGCCGTGTCAAAGCAGATTGTGAAGAATAATCCTGATATGGGTACGCTCA 761
||||||| ||||| ||| | |||||||||||||| ||||| |||||||||||||| ||||
Sbjct 770 TGGCCATGACTGCTGTGACGAAGCAGATTGTGAATAATAACCCTGATATGGGTACTCTCA 829
Query 762 AGCCGTTAGGTTACGACCAGTTTCTCGTTATATCGATAGGAACAGGATCTACaaaaaaaG 821
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 830 ATCCGTTAGGTTACGACCAGTTTCTCGTTATATCGATAGGAACAGGATCTGCAAAAAAAG 889
Query 822 AAGAGAAGTACAGCGCAAAGAAGGCTGCAAAATGGGGAATCATATCTTGGTTATATGAAG 881
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AAGAGAGGTACAGCGCAAAGAAGGCTGCAAAATGGGGAATCATATCTTGGTTATATGAAG 949
Query 882 ATGGATCTACTCCAATATTAGACATTACCATGGAATCAAGCCGCGACATCGTCCATTATC 941
||||| ||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 950 ATGGAACTACTCCGATATTAGACATTACCTTTGAATCAAGCCGCGACATAGTCCATTATC 1009
Query 942 ATAGCTCTGTTTTGTTTAAAGCCCTAGAATCTGAAGACAAGTACCTCAGAATCGATGATG 1001
| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1010 ACAGCTCTGTTGTGTTTAAAGCCCTACAATCTGAAGACAAGTACCTCAGAATCGATGATG 1069
Query 1002 ATACATTGGAAGGAGATGTAAGCAATATGGATCTAGCGACAAAGTCTAACTTAGAGAATC 1061
|||||||||||||||||| ||||| | |||||||| ||||||||||||| ||||| ||||
Sbjct 1070 ATACATTGGAAGGAGATGCAAGCACTCTGGATCTATCGACAAAGTCTAATTTAGAAAATC 1129
Query 1062 TTA-AAAAGATTGGAGAGAAGATGCTGACAAACAGAGTCGCGCAAATGAACATCGACACT 1120
||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1130 TTATAAAAC-TTGGAGAGAAGATGCTGACAAACAGAGTCATGCAAATGAACATCGACACT 1188
Query 1121 GGTGCATATGAACCTATTACTGAAAATATTACCAATGATGAACAACTAAAGAGGTTTGCG 1180
||| ||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1189 GGTACATATGAACCTGCTGCTGAAAATATTAACAATGATGAACAACTCAAGAGGTTTGCG 1248
Query 1181 AAAATCCTCTCGGACGAAAGGAAATTAAGGAGACTGAGGAGCGACACGATGA-TGAAAGA 1239
||||||||||| || |||||||||||||||||| ||||||||||| |||| | |||||
Sbjct 1249 AAAATCCTCTCCGAGGAAAGGAAATTAAGGAGAAAGAGGAGCGACAAAATGACT-AAAGA 1307
Query 1240 TCCACCAAACGGATCACCATAGATCAAATAAAAGGAAATACAGCCTGAAAAATCACTCA- 1298
| || ||| |||||||| | ||||||| ||||||||||||||||| ||||| ||||||
Sbjct 1308 TTCATCAATCGGATCACAAGAGATCAAGTAAAAGGAAATACAGCCGGAAAA-TCACTCTC 1366
Query 1299 -TGCTTTTGTGTGAAATTATT 1318
||||||||||||||||||||
Sbjct 1367 GTGCTTTTGTGTGAAATTATT 1387
Score = 213 bits (115), Expect = 4e-54
Identities = 132/140 (94%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 26 ATGGAGAACGACTCGACCAT-CAAGAAAAACAAACCGCCATCGTGCGGCTCACTCGTAAC 84
||||||||||| ||| || | ||||||||||| |||||||||||||| ||||||||||
Sbjct 1 ATGGAGAACGAATCG-CCCTCCAAGAAAAACATGCCGCCATCGTGCGGAACACTCGTAAC 59
Query 85 CATCCTCAGCCTCGATGGTGGTGGAGTCAGAGGAATCATCGCCGGAGTAATCCTTGCCTA 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CATCCTCAGCCTCGATGGTGGTGGAGTCAGAGGAATCATCGCCGGAGTAATCCTTGCCTA 119
Query 145 TCTCGAAAAACAACTTCAGG 164
||||||||||||||||||||
Sbjct 120 TCTCGAAAAACAACTTCAGG 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64859104140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5