BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490923
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37080.2 | Symbols: | Protein of unknown function, DUF547 |... 2887 0.0
> AT4G37080.2 | Symbols: | Protein of unknown function, DUF547
| chr4:17473272-17476952 FORWARD LENGTH=2320
Length=2320
Score = 2887 bits (1563), Expect = 0.0
Identities = 1742/1828 (95%), Gaps = 13/1828 (1%)
Strand=Plus/Plus
Query 55 GAGAAGAAGAAGATGGAGTCTCAAGGCAATGGAGCTGTTGCTAGTTCAGGAAAATCTCTG 114
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 327 GAGAAGAAGAAGATGGAGTCTCAAGGCAATGGAGCTGTTGCTAATTCAGGAAAATCTCTG 386
Query 115 GTTAATCGCCGCCGAGCTAATAAAGAAAAGAAAATGGATTTGCTACAAGATGTTGATAAG 174
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 387 GTTAATCGCCGACGAGCTAACAAAGAAAAGAAAATGGATTTGCTACAAGATGTTGATAAG 446
Query 175 CTTAAGAGGAAGCTTAGACAGGAGGAGAATGTGCATAGAGCATTGGAGAGAGCTTTCACT 234
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 447 CTTAAGAGGAAGCTGAGACAGGAGGAGAATGTTCATAGAGCATTGGAGAGAGCTTTTACT 506
Query 235 AGACCTTTAGGAGCTTTACCTCGTCTTCCGTCTTATCTCCCTCGACATACATTGGAGCTT 294
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 507 AGACCTTTAGGAGCTTTACCTCGTCTTCCGTCTTACCTCCCTCGACATACATTGGAGCTT 566
Query 295 CTTGCTGAAGTAGCTGTTCTTGAAGAGGAAGTGGTTCGGTTAGAAGAGCAAGTTGTTAGC 354
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 567 CTTGCTGAAGTAGCTGTTCTTGAAGAGGAAGTGGTTCGGTTAGAGGAGCAAGTTGTAAAC 626
Query 355 TTTAGACAAGGTTTATACCAAGAAGCTGTTTACATATCTTCCAAGAGGAATATGGAGAGT 414
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 627 TTTAGACAAGGTTTATACCAAGAAGCTGTTTACATATCTTCAAAGAGGAATCTGGAGAGT 686
Query 415 CCTAATAACAACAGTTTGAACGAGAATTCGCCTGTTAGAAGCACTAAACACCAGAGATCG 474
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 687 CCTAATAACAACAGTTTGAATGAGAATTCGCCCGTTAGAAGCACTAAACACCAGAGATCG 746
Query 475 AAATCCATGTCGCAACACGAGTTCAATTCTATGATCACTCCTC-CTAAAAAGCATCAACA 533
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 747 AAATCAATGTCGCAACACGAGTTCAATTCTATGATCACTCC-CACTAAAAAGCATCAACA 805
Query 534 GTCTCTTAGCAGAAGCATCTCAAGTAGGAAACTCTTCTCCTCTGATCAAACAGTTAATGA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GTCTCTTAGCAGAAGCATCTCAAGTAGGAAACTCTTCTCCTCTGATCAAACAGTTAATGA 865
Query 594 TCGAAGTGGTCAGAGAGTGGTAAATGGCAAACAAGCGTCGCCTAAACCAAATCTAAGCAG 653
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 866 CCGAAGTGGTCAGAGAGTGGTAAGTGGCAAACAAGCGTCGCCTAAATCAAATCTAAGCAG 925
Query 654 TGTTAC----A--AAGCCAGTAGATGTGAGGGGGAAAGAGAATCAGACCTCTAGTAATCC 707
|||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 926 TGTTACTAATACTAAGCCAGTAGATGTGAGAGGGAAAGAGAATCAGACCTCTAGTAATGC 985
Query 708 TTCAAAAGACAAGAAAAATAAAGAATCACCTGAGAAGAAGCTTGGCAGATTCTTGACATC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TTCAAAAGACAAGAAAAATAAAGAATCACCTGAGAAGAAGCTTGGCAGATTCTTGACATC 1045
Query 768 TGTGAAGAAGAAGAAACCGTTGAGTAAACCAGAGGCAGCAGCGGATAAACACTCAGAATC 827
|||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||||||
Sbjct 1046 TGTGAAGAAGAAGAAACCTTTGATTAAGCCGGAGGCTGCAGCGGATAAACACTCAGAATC 1105
Query 828 AATCAAATTGCAGCTAGATGATAGATTAACAGATCAGGATAAAGCACAAGAGAGTGTGTC 887
|| ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 1106 AACCAAATTGCAGCTAGATGATAGATTAGCAGATCAGGACAAAGCTCAAGAGAGTGTGTC 1165
Query 888 AGGATCATCTTCAGAAGACAAGACAGTGCAAAATGGAAATGTAGCAAACAGAGTTTCAGA 947
|||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1166 AGGATCATCTTCGGAAGACAAGACACTGCAAAGTGGAAATGTAGCAAACAGAGTTTCAGA 1225
Query 948 GGATTTACTGAAATGTCTTGTGACTATTATCTTGAGGATTAGCTCGTCGAAGGACATTGT 1007
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1226 GGATTTACTGAAATGTCTTGTGACTATTATCTTGAGGATTAGCTCGTCCAAGGACATTGT 1285
Query 1008 GTTGGATCCATATAATAACTGTTCAGAATGGAGAACAAGAGAGCTTGGTGCATACACGCA 1067
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |||
Sbjct 1286 GTTGGATCCATATAATAACTGCTCAGAGTGGAGAACAAGAGAACTTGGTGCATACAAGCA 1345
Query 1068 TCTTTCCTCGGTTGATGCATCCTCAGTTGATCTTGGACGAAGAATCAATGCTTCATTTCT 1127
| |||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1346 TTTTTCGTCGGTCGATACATCTTCAGTTGATCTTGGACGAAGAATCAATGCTTCATTTCT 1405
Query 1128 GATCCATCGTCTCAAGTTCCTGCTTAATAAGCTTTCGGTTGTCAATTTAGACGGTCTTAG 1187
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1406 GATCCATCGTCTCAAGTTCCTGCTTAATAAGCTTTCTGTTGTCAATCTAGACGGTCTTAG 1465
Query 1188 CCACCAGCAGAAGCTTGCATTCTGGATAAATACTTATAATGCCTGCGTGATGAATGCATT 1247
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1466 CCACCAGCAGAAGCTTGCATTCTGGATAAATACTTATAATTCCTGCGTTATGAATGCATT 1525
Query 1248 CTTGGAGCACGGAATCCCGGGGACCCCTGAAATGGTTGTAGCCCTGATGCAGAAGGCAAC 1307
|||||||||||| ||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 1526 CTTGGAGCACGGGATCCCGGCGACTCCTGAAATGGTTGTAGCGCTGATGCAGAAGGCAAC 1585
Query 1308 AATAATCGTAGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACT 1367
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 AATAATTGTGGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACT 1645
Query 1368 TCCATACCACTTGAAATTCACTTGTCCCAAAACTGCAACACATGAAGAGATGAGAGCTCA 1427
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1646 TCCATACCACTTGAAATTCACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCA 1705
Query 1428 TAGTACATTTGGATTGGAATGGTCAGAGCCTTTAGTCACATTCGCTCTCGCCTGTGGAAG 1487
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1706 TAGCACATTTGGATTGGAATGGTCAGAGCCCTTGGTCACATTCGCTCTCGCCTGTGGAAG 1765
Query 1488 CTGGTCCTCTCCTGCTGTAAGGGTCTACACAGCAGCTAATGTAGAGGAAGAGCTAGAAGC 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 CTGGTCCTCTCCTGCTGTAAGGGTCTACACAGCAGCTAATGTAGAGGAAGAGCTAGAAGC 1825
Query 1548 TGCAAAGAGAGATTATCTTCAAGCATCAGTAGGGATCTCAAAGAAGAACAAACTAATGCT 1607
|||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1826 TGCAAAGAGAGATTATCTGCAAGCATCAGTTGGGATATCAAAGAACAACAAACTAATGCT 1885
Query 1608 TCCAAAGGTGTTAGATTGGTATTTACTCGACTTTGCCAAGGATTTGGAATCGTTGCTCGA 1667
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1886 TCCAAAGGTATTAGATTGGTACTTACTCGACTTTGCCAAGGATTTGGAATCGTTACTGGA 1945
Query 1668 TTGGGTTTGCCTTCAGTTACCTGATAAACTAAGAGAAGAAGCAAATAAGTGTATGGAGAG 1727
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1946 TTGGGTTTGCCTTCAGTTACCTGATAAACTAAGAGAAGAAGCAACTAAGTGTATGGAGAG 2005
Query 1728 AAAGAACAAAGAATCACTAATGGAATTGGTTCAAGTAGTACCATATGACTTCAGTTTCAG 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 AAAGAACAAAGAATCACTAATGGAATTGGTTCAAGTAGTACCATATGACTTCAGTTTCAG 2065
Query 1788 GTTACTTTTGCATCAATGAATaaaaaaaaaaGTGAAAACATTGTATAGATTTGGATTGGG 1847
|| |||||||||||||||||||||||| || ||| || ||||||||||||| |||||
Sbjct 2066 ATTGCTTTTGCATCAATGAATAAAAAAAT--GTTAAA-CACTGTATAGATTTGGGTTGGG 2122
Query 1848 GAAA-AGGTAAGGTAGAGCGCATGAGTT 1874
|| | || ||| ||||||||||||||||
Sbjct 2123 GAGAGAG-TAAAGTAGAGCGCATGAGTT 2149
Score = 115 bits (62), Expect = 2e-24
Identities = 77/83 (93%), Gaps = 6/83 (7%)
Strand=Plus/Plus
Query 1878 ATATATAG---ATATGGTTGTGTTCTTTTTTCACTATAAAGTGATGTAAAATTCATTCAA 1934
|||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 2185 ATATATAGATTATATGGTTGTGTTC--TTTT-ACTATAAAGTGATGTAAAATTCATTCAA 2241
Query 1935 TTGATTTTTATTTGTAATGCTAT 1957
|||||||||||||||||||||||
Sbjct 2242 TTGATTTTTATTTGTAATGCTAT 2264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98393068200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5