BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490923 Length=1986 Score E Sequences producing significant alignments: (Bits) Value AT4G37080.2 | Symbols: | Protein of unknown function, DUF547 |... 2887 0.0 > AT4G37080.2 | Symbols: | Protein of unknown function, DUF547 | chr4:17473272-17476952 FORWARD LENGTH=2320 Length=2320 Score = 2887 bits (1563), Expect = 0.0 Identities = 1742/1828 (95%), Gaps = 13/1828 (1%) Strand=Plus/Plus Query 55 GAGAAGAAGAAGATGGAGTCTCAAGGCAATGGAGCTGTTGCTAGTTCAGGAAAATCTCTG 114 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 327 GAGAAGAAGAAGATGGAGTCTCAAGGCAATGGAGCTGTTGCTAATTCAGGAAAATCTCTG 386 Query 115 GTTAATCGCCGCCGAGCTAATAAAGAAAAGAAAATGGATTTGCTACAAGATGTTGATAAG 174 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 387 GTTAATCGCCGACGAGCTAACAAAGAAAAGAAAATGGATTTGCTACAAGATGTTGATAAG 446 Query 175 CTTAAGAGGAAGCTTAGACAGGAGGAGAATGTGCATAGAGCATTGGAGAGAGCTTTCACT 234 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 447 CTTAAGAGGAAGCTGAGACAGGAGGAGAATGTTCATAGAGCATTGGAGAGAGCTTTTACT 506 Query 235 AGACCTTTAGGAGCTTTACCTCGTCTTCCGTCTTATCTCCCTCGACATACATTGGAGCTT 294 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 507 AGACCTTTAGGAGCTTTACCTCGTCTTCCGTCTTACCTCCCTCGACATACATTGGAGCTT 566 Query 295 CTTGCTGAAGTAGCTGTTCTTGAAGAGGAAGTGGTTCGGTTAGAAGAGCAAGTTGTTAGC 354 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | Sbjct 567 CTTGCTGAAGTAGCTGTTCTTGAAGAGGAAGTGGTTCGGTTAGAGGAGCAAGTTGTAAAC 626 Query 355 TTTAGACAAGGTTTATACCAAGAAGCTGTTTACATATCTTCCAAGAGGAATATGGAGAGT 414 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 627 TTTAGACAAGGTTTATACCAAGAAGCTGTTTACATATCTTCAAAGAGGAATCTGGAGAGT 686 Query 415 CCTAATAACAACAGTTTGAACGAGAATTCGCCTGTTAGAAGCACTAAACACCAGAGATCG 474 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 687 CCTAATAACAACAGTTTGAATGAGAATTCGCCCGTTAGAAGCACTAAACACCAGAGATCG 746 Query 475 AAATCCATGTCGCAACACGAGTTCAATTCTATGATCACTCCTC-CTAAAAAGCATCAACA 533 ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 747 AAATCAATGTCGCAACACGAGTTCAATTCTATGATCACTCC-CACTAAAAAGCATCAACA 805 Query 534 GTCTCTTAGCAGAAGCATCTCAAGTAGGAAACTCTTCTCCTCTGATCAAACAGTTAATGA 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 806 GTCTCTTAGCAGAAGCATCTCAAGTAGGAAACTCTTCTCCTCTGATCAAACAGTTAATGA 865 Query 594 TCGAAGTGGTCAGAGAGTGGTAAATGGCAAACAAGCGTCGCCTAAACCAAATCTAAGCAG 653 |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 866 CCGAAGTGGTCAGAGAGTGGTAAGTGGCAAACAAGCGTCGCCTAAATCAAATCTAAGCAG 925 Query 654 TGTTAC----A--AAGCCAGTAGATGTGAGGGGGAAAGAGAATCAGACCTCTAGTAATCC 707 |||||| | ||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 926 TGTTACTAATACTAAGCCAGTAGATGTGAGAGGGAAAGAGAATCAGACCTCTAGTAATGC 985 Query 708 TTCAAAAGACAAGAAAAATAAAGAATCACCTGAGAAGAAGCTTGGCAGATTCTTGACATC 767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 986 TTCAAAAGACAAGAAAAATAAAGAATCACCTGAGAAGAAGCTTGGCAGATTCTTGACATC 1045 Query 768 TGTGAAGAAGAAGAAACCGTTGAGTAAACCAGAGGCAGCAGCGGATAAACACTCAGAATC 827 |||||||||||||||||| |||| ||| || ||||| ||||||||||||||||||||||| Sbjct 1046 TGTGAAGAAGAAGAAACCTTTGATTAAGCCGGAGGCTGCAGCGGATAAACACTCAGAATC 1105 Query 828 AATCAAATTGCAGCTAGATGATAGATTAACAGATCAGGATAAAGCACAAGAGAGTGTGTC 887 || ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| Sbjct 1106 AACCAAATTGCAGCTAGATGATAGATTAGCAGATCAGGACAAAGCTCAAGAGAGTGTGTC 1165 Query 888 AGGATCATCTTCAGAAGACAAGACAGTGCAAAATGGAAATGTAGCAAACAGAGTTTCAGA 947 |||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 1166 AGGATCATCTTCGGAAGACAAGACACTGCAAAGTGGAAATGTAGCAAACAGAGTTTCAGA 1225 Query 948 GGATTTACTGAAATGTCTTGTGACTATTATCTTGAGGATTAGCTCGTCGAAGGACATTGT 1007 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1226 GGATTTACTGAAATGTCTTGTGACTATTATCTTGAGGATTAGCTCGTCCAAGGACATTGT 1285 Query 1008 GTTGGATCCATATAATAACTGTTCAGAATGGAGAACAAGAGAGCTTGGTGCATACACGCA 1067 ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||| Sbjct 1286 GTTGGATCCATATAATAACTGCTCAGAGTGGAGAACAAGAGAACTTGGTGCATACAAGCA 1345 Query 1068 TCTTTCCTCGGTTGATGCATCCTCAGTTGATCTTGGACGAAGAATCAATGCTTCATTTCT 1127 | |||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1346 TTTTTCGTCGGTCGATACATCTTCAGTTGATCTTGGACGAAGAATCAATGCTTCATTTCT 1405 Query 1128 GATCCATCGTCTCAAGTTCCTGCTTAATAAGCTTTCGGTTGTCAATTTAGACGGTCTTAG 1187 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 1406 GATCCATCGTCTCAAGTTCCTGCTTAATAAGCTTTCTGTTGTCAATCTAGACGGTCTTAG 1465 Query 1188 CCACCAGCAGAAGCTTGCATTCTGGATAAATACTTATAATGCCTGCGTGATGAATGCATT 1247 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 1466 CCACCAGCAGAAGCTTGCATTCTGGATAAATACTTATAATTCCTGCGTTATGAATGCATT 1525 Query 1248 CTTGGAGCACGGAATCCCGGGGACCCCTGAAATGGTTGTAGCCCTGATGCAGAAGGCAAC 1307 |||||||||||| ||||||| ||| ||||||||||||||||| ||||||||||||||||| Sbjct 1526 CTTGGAGCACGGGATCCCGGCGACTCCTGAAATGGTTGTAGCGCTGATGCAGAAGGCAAC 1585 Query 1308 AATAATCGTAGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACT 1367 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1586 AATAATTGTGGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACT 1645 Query 1368 TCCATACCACTTGAAATTCACTTGTCCCAAAACTGCAACACATGAAGAGATGAGAGCTCA 1427 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1646 TCCATACCACTTGAAATTCACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCA 1705 Query 1428 TAGTACATTTGGATTGGAATGGTCAGAGCCTTTAGTCACATTCGCTCTCGCCTGTGGAAG 1487 ||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1706 TAGCACATTTGGATTGGAATGGTCAGAGCCCTTGGTCACATTCGCTCTCGCCTGTGGAAG 1765 Query 1488 CTGGTCCTCTCCTGCTGTAAGGGTCTACACAGCAGCTAATGTAGAGGAAGAGCTAGAAGC 1547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1766 CTGGTCCTCTCCTGCTGTAAGGGTCTACACAGCAGCTAATGTAGAGGAAGAGCTAGAAGC 1825 Query 1548 TGCAAAGAGAGATTATCTTCAAGCATCAGTAGGGATCTCAAAGAAGAACAAACTAATGCT 1607 |||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct 1826 TGCAAAGAGAGATTATCTGCAAGCATCAGTTGGGATATCAAAGAACAACAAACTAATGCT 1885 Query 1608 TCCAAAGGTGTTAGATTGGTATTTACTCGACTTTGCCAAGGATTTGGAATCGTTGCTCGA 1667 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || || Sbjct 1886 TCCAAAGGTATTAGATTGGTACTTACTCGACTTTGCCAAGGATTTGGAATCGTTACTGGA 1945 Query 1668 TTGGGTTTGCCTTCAGTTACCTGATAAACTAAGAGAAGAAGCAAATAAGTGTATGGAGAG 1727 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1946 TTGGGTTTGCCTTCAGTTACCTGATAAACTAAGAGAAGAAGCAACTAAGTGTATGGAGAG 2005 Query 1728 AAAGAACAAAGAATCACTAATGGAATTGGTTCAAGTAGTACCATATGACTTCAGTTTCAG 1787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2006 AAAGAACAAAGAATCACTAATGGAATTGGTTCAAGTAGTACCATATGACTTCAGTTTCAG 2065 Query 1788 GTTACTTTTGCATCAATGAATaaaaaaaaaaGTGAAAACATTGTATAGATTTGGATTGGG 1847 || |||||||||||||||||||||||| || ||| || ||||||||||||| ||||| Sbjct 2066 ATTGCTTTTGCATCAATGAATAAAAAAAT--GTTAAA-CACTGTATAGATTTGGGTTGGG 2122 Query 1848 GAAA-AGGTAAGGTAGAGCGCATGAGTT 1874 || | || ||| |||||||||||||||| Sbjct 2123 GAGAGAG-TAAAGTAGAGCGCATGAGTT 2149 Score = 115 bits (62), Expect = 2e-24 Identities = 77/83 (93%), Gaps = 6/83 (7%) Strand=Plus/Plus Query 1878 ATATATAG---ATATGGTTGTGTTCTTTTTTCACTATAAAGTGATGTAAAATTCATTCAA 1934 |||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 2185 ATATATAGATTATATGGTTGTGTTC--TTTT-ACTATAAAGTGATGTAAAATTCATTCAA 2241 Query 1935 TTGATTTTTATTTGTAATGCTAT 1957 ||||||||||||||||||||||| Sbjct 2242 TTGATTTTTATTTGTAATGCTAT 2264 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98393068200 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5