BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490927 Length=1560 Score E Sequences producing significant alignments: (Bits) Value AT4G37110.1 | Symbols: | Zinc-finger domain of monoamine-oxida... 1301 0.0 > AT4G37110.1 | Symbols: | Zinc-finger domain of monoamine-oxidase A repressor R1 | chr4:17484125-17486276 REVERSE LENGTH=1551 Length=1551 Score = 1301 bits (704), Expect = 0.0 Identities = 870/949 (92%), Gaps = 16/949 (2%) Strand=Plus/Plus Query 1 AGAGAGAGAGGGAAAGGTTAGAACTTTGAAACCAAAATCAGTTCATCAA--TCTCACAAT 58 ||||| |||||||||| || |||||||||| |||||||||||||||||| ||||||||| Sbjct 22 AGAGAAAGAGGGAAAGATTGGAACTTTGAATCCAAAATCAGTTCATCAATCTCTCACAAT 81 Query 59 GCCTGCGTTGAGAACGAGAGCCAAATGTTCGATTCCCATCTCAAACCCTAATCCAACAGT 118 ||||| | ||||||||||||| ||||||||||||||| || ||||||||||||||||||| Sbjct 82 GCCTGTGGTGAGAACGAGAGCGAAATGTTCGATTCCCGTCACAAACCCTAATCCAACAGT 141 Query 119 C---GGAGGAAACCCAAACGTCTCGATCTACGAGAAATGCAGAGAAGACAGGATCAAGGA 175 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 CGGAGGAGGAAACTCAAACGTCTCGATCTACGAGAAATGCAGAGAAGACAGGATCAAGGA 201 Query 176 GAATCTTCAGAGGATGCAGAATCTCGGAATCTTCGATCTCTCTCTCAAACTCAAATCCGA 235 |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| Sbjct 202 GAATCTTCAGAGGATGAAGAATCTCGGAATCATGGATCTCTCTCTCAAACTCAAATCCGA 261 Query 236 TATCCGACCCGCCAAAAGGCGTTACTGTAACTCTAAT-CCGAATCCAGATTGTA-AATCG 293 |||||||||||||||||||||||| ||||||||||| || ||||| | | | | || | Sbjct 262 GATCCGACCCGCCAAAAGGCGTTACGGTAACTCTAATGCC-AATCCGGGTCG-AGAAACA 319 Query 294 CCTCCTCTTCAGCTCTCCGTCTCCACCAGAAGATCCTCAAGATTGAAGCAGGAACCGCCG 353 ||||| ||||||| ||||||||| | ||| |||||||||||||||||||||| ||||| Sbjct 320 TCTCCTATTCAGCTTTCCGTCTCCTCTAGACGATCCTCAAGATTGAAGCAGGAGCCGCCA 379 Query 354 GTTACTCGGAGATCCTCGAGGTTGAAGAACGCAACGCCAGTTTCCTATGCAGAGGAACCT 413 ||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct 380 GTTTCTCGGAGATCCTCGAGATTGAAGAACGCTACACCAGTTTCCTACGCAGAGGAACCT 439 Query 414 G-A--GAAGAAGGGTAAAGCATCTAAAGAAGATATTGTTTTGTGGGTAGGAGAAGGCGCA 470 | | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct 440 GAACTGAAGAAGGGTAAAGTGTCTAAAGAAGAGATTGTTTTGTGGGTAGGAGAAGGCGTA 499 Query 471 AGGCCAGAGATTTACACTGAGGAGCATGAGAAACTGTTAGGTAACACAGAACGAACTTGG 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 AGGCCAGAGATTTACACTGAGGAGCATGAGAAACTGTTAGGTAACACAGAACGAACTTGG 559 Query 531 GAGCTATTTGTCCATGGTTACGACAAAGATGGGAAACGGATTTATGATCCTGTTAGAGGA 590 ||||| ||||| |||||| |||||| ||||||||||||||||||| |||||||||||| Sbjct 560 GAGCTTTTTGTTGATGGTTGTGACAAAAATGGGAAACGGATTTATGACCCTGTTAGAGGA 619 Query 591 AAGACTTGCCACCAGTGCAGGCAGAAGACGCTCGGTTATCATACCCAATGCAGCCAGTGT 650 ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 620 AAGTGTTGCCACCAGTGCAGGCAGAAGACGCTAGGTTATCATACCCAATGCAGCCAGTGT 679 Query 651 AACCCTTCGGTTCGAGGTCAATTCTGTGGAGATTGTTTATACATGAGATATGGAGAACAT 710 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 AACCATTCTGTTCGAGGTCAATTCTGTGGAGATTGTTTATACATGAGATATGGAGAACAT 739 Query 711 GTTCTTGAATCTCTGGAAAATCCGGACTGGATTTGTCCAGTCTGTCGTGATATCTGCAAC 770 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 740 GTTCTTGAAGCTCTGGAAAATCCGGACTGGATTTGTCCAGTCTGTCGCGATATCTGCAAC 799 Query 771 TGCAGTTTATGTCGTA-AAGACAAAGGGTGGCTCCCAACTGGCCCAGCTTACAGGAAGAT 829 |||||||| ||||||| || | |||||||||||||||||||| |||||||||||||||| Sbjct 800 TGCAGTTTCTGTCGTACAAAA-AAAGGGTGGCTCCCAACTGGTGCAGCTTACAGGAAGAT 858 Query 830 ACTTAAACTCGGGTACAAGTCTGTTGCACATTATCTGATTCAAACCAAC-AAGCAGTCGG 888 || |||||||||||| ||||||||||||||||||||||||||||||||| || ||||| | Sbjct 859 ACATAAACTCGGGTATAAGTCTGTTGCACATTATCTGATTCAAACCAACCAA-CAGTCAG 917 Query 889 AAACAAGTGAGGATGGTGAAACTGAAGGTGCTGCAAATAGTCAAGCTTC 937 ||||||||||||||| ||||||||| | | ||||| ||||||||||||| Sbjct 918 AAACAAGTGAGGATGATGAAACTGATGCTCCTGCAGATAGTCAAGCTTC 966 Score = 636 bits (344), Expect = 0.0 Identities = 529/610 (87%), Gaps = 46/610 (8%) Strand=Plus/Plus Query 976 CTTCAGAAGAAGATCATCTCCTTCTCTTAACTGATGGGATTCAGGACAATCACATTGACG 1035 ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 963 CTTCAGAAGGAGATCATCTCCTTCTCATAACTGATGGGATTCAGGACAATCAAATTGACG 1022 Query 1036 AGAATCTC---GATGACGATGGCACAAATAAGAATCCGGATTCAGCTAGAAAATCATTAA 1092 | |||||| ||||| |||||| |||| ||||||||||||||||||||||| |||||| Sbjct 1023 AAAATCTCGATGATGATGATGGCTCAAACAAGAATCCGGATTCAGCTAGAAAGTCATTAT 1082 Query 1093 GCTTCTTCTCTTCTGGGGACAACCAAACTTCAGTGACTGATGGTCATGTTCTAGGTGATG 1152 ||||||| || |||||| ||||||||||||||||||| | | | | |||||| Sbjct 1083 GCTTCTTGTCGTCTGGGAACAACCAAACTTCAGTGAC---T-G--A-----T-GGTGATC 1130 Query 1153 TCAAGCCATTAGATGTGAACGAGATGGAT-C--C-A--CCTGCGATCATTGATCTTGAGG 1206 ||||||||||||||||||| ||| ||||| | | | |||| |||||| |||||||||| Sbjct 1131 TCAAGCCATTAGATGTGAAAGAGGTGGATCCAGCAACTCCTGTGATCATCGATCTTGAGG 1190 Query 1207 CTCAGTGCTGTGAGACTGAGAGAAGGGCTAACTCTGCAAACAAAGAGAACCGAGAAACAA 1266 |||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1191 CTCAGTGCAGTGAAACTGAGAGGATGGCTAACTCTGCAAACAAAGAGAACCGAGAAACAA 1250 Query 1267 GAAGCAAGCGAAAGATGTCTCCTGAACCAAACCCAAATAGTATTGGTGGAAGACTGAGAC 1326 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1251 GAAGCAAGCGAAAGATGTCTGCTGAACCAAACCCAAATAGTATTGGTGGAAGACTGAGAC 1310 Query 1327 AGCGTCGTAAGATTCAAGCTTGAATGAGAGAAAGAAGTTTCAGAAGACTATGAATGGAAC 1386 ||||||||||||||||||||||| |||||||| |||||||||||||| ||| | | Sbjct 1311 AGCGTCGTAAGATTCAAGCTTGAGTGAGAGAA-GAAGTTTCAGAAGA----GAA---A-C 1361 Query 1387 TCTGCTTTTGCTGCCTGTAC-T-CTC-A-GGCTAATCAAATGGAAGCTCTTTGTTT-C-- 1439 | |||||||||||| ||||| | ||| | |||||| |||||||||| ||||| ||| | Sbjct 1362 TATGCTTTTGCTGCATGTACGTACTCTAAGGCTAAACAAATGGAAGATCTTTTTTTTCTT 1421 Query 1440 --C--TTTT-C----GGAGTAGGCATGGATCATGTAAGAACTTGACGGCTTGTCAAATTT 1490 | |||| | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1422 TTCCATTTTTCTATCGGAGTAGGCATGGATCATGTAAGAACTTGACGGCTTTTCAAATTT 1481 Query 1491 TGTGTTTTGTTGCTGTTACTGATCTGATGTAATGGATGCTAGTTGCACGGTTAATGAATT 1550 ||||||||||||||||| |||||||||||||||||| | ||||| |||||||| ||||| Sbjct 1482 TGTGTTTTGTTGCTGTTGGTGATCTGATGTAATGGATTCCAGTTGAACGGTTAAAGAATT 1541 Query 1551 TGCCTAAACC 1560 |||||||||| Sbjct 1542 TGCCTAAACC 1551 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77007636030 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5