BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490927
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37110.1 | Symbols: | Zinc-finger domain of monoamine-oxida... 1301 0.0
> AT4G37110.1 | Symbols: | Zinc-finger domain of monoamine-oxidase
A repressor R1 | chr4:17484125-17486276 REVERSE LENGTH=1551
Length=1551
Score = 1301 bits (704), Expect = 0.0
Identities = 870/949 (92%), Gaps = 16/949 (2%)
Strand=Plus/Plus
Query 1 AGAGAGAGAGGGAAAGGTTAGAACTTTGAAACCAAAATCAGTTCATCAA--TCTCACAAT 58
||||| |||||||||| || |||||||||| |||||||||||||||||| |||||||||
Sbjct 22 AGAGAAAGAGGGAAAGATTGGAACTTTGAATCCAAAATCAGTTCATCAATCTCTCACAAT 81
Query 59 GCCTGCGTTGAGAACGAGAGCCAAATGTTCGATTCCCATCTCAAACCCTAATCCAACAGT 118
||||| | ||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 82 GCCTGTGGTGAGAACGAGAGCGAAATGTTCGATTCCCGTCACAAACCCTAATCCAACAGT 141
Query 119 C---GGAGGAAACCCAAACGTCTCGATCTACGAGAAATGCAGAGAAGACAGGATCAAGGA 175
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CGGAGGAGGAAACTCAAACGTCTCGATCTACGAGAAATGCAGAGAAGACAGGATCAAGGA 201
Query 176 GAATCTTCAGAGGATGCAGAATCTCGGAATCTTCGATCTCTCTCTCAAACTCAAATCCGA 235
|||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 202 GAATCTTCAGAGGATGAAGAATCTCGGAATCATGGATCTCTCTCTCAAACTCAAATCCGA 261
Query 236 TATCCGACCCGCCAAAAGGCGTTACTGTAACTCTAAT-CCGAATCCAGATTGTA-AATCG 293
|||||||||||||||||||||||| ||||||||||| || ||||| | | | | || |
Sbjct 262 GATCCGACCCGCCAAAAGGCGTTACGGTAACTCTAATGCC-AATCCGGGTCG-AGAAACA 319
Query 294 CCTCCTCTTCAGCTCTCCGTCTCCACCAGAAGATCCTCAAGATTGAAGCAGGAACCGCCG 353
||||| ||||||| ||||||||| | ||| |||||||||||||||||||||| |||||
Sbjct 320 TCTCCTATTCAGCTTTCCGTCTCCTCTAGACGATCCTCAAGATTGAAGCAGGAGCCGCCA 379
Query 354 GTTACTCGGAGATCCTCGAGGTTGAAGAACGCAACGCCAGTTTCCTATGCAGAGGAACCT 413
||| |||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct 380 GTTTCTCGGAGATCCTCGAGATTGAAGAACGCTACACCAGTTTCCTACGCAGAGGAACCT 439
Query 414 G-A--GAAGAAGGGTAAAGCATCTAAAGAAGATATTGTTTTGTGGGTAGGAGAAGGCGCA 470
| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 440 GAACTGAAGAAGGGTAAAGTGTCTAAAGAAGAGATTGTTTTGTGGGTAGGAGAAGGCGTA 499
Query 471 AGGCCAGAGATTTACACTGAGGAGCATGAGAAACTGTTAGGTAACACAGAACGAACTTGG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGGCCAGAGATTTACACTGAGGAGCATGAGAAACTGTTAGGTAACACAGAACGAACTTGG 559
Query 531 GAGCTATTTGTCCATGGTTACGACAAAGATGGGAAACGGATTTATGATCCTGTTAGAGGA 590
||||| ||||| |||||| |||||| ||||||||||||||||||| ||||||||||||
Sbjct 560 GAGCTTTTTGTTGATGGTTGTGACAAAAATGGGAAACGGATTTATGACCCTGTTAGAGGA 619
Query 591 AAGACTTGCCACCAGTGCAGGCAGAAGACGCTCGGTTATCATACCCAATGCAGCCAGTGT 650
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 620 AAGTGTTGCCACCAGTGCAGGCAGAAGACGCTAGGTTATCATACCCAATGCAGCCAGTGT 679
Query 651 AACCCTTCGGTTCGAGGTCAATTCTGTGGAGATTGTTTATACATGAGATATGGAGAACAT 710
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 AACCATTCTGTTCGAGGTCAATTCTGTGGAGATTGTTTATACATGAGATATGGAGAACAT 739
Query 711 GTTCTTGAATCTCTGGAAAATCCGGACTGGATTTGTCCAGTCTGTCGTGATATCTGCAAC 770
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 740 GTTCTTGAAGCTCTGGAAAATCCGGACTGGATTTGTCCAGTCTGTCGCGATATCTGCAAC 799
Query 771 TGCAGTTTATGTCGTA-AAGACAAAGGGTGGCTCCCAACTGGCCCAGCTTACAGGAAGAT 829
|||||||| ||||||| || | |||||||||||||||||||| ||||||||||||||||
Sbjct 800 TGCAGTTTCTGTCGTACAAAA-AAAGGGTGGCTCCCAACTGGTGCAGCTTACAGGAAGAT 858
Query 830 ACTTAAACTCGGGTACAAGTCTGTTGCACATTATCTGATTCAAACCAAC-AAGCAGTCGG 888
|| |||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 859 ACATAAACTCGGGTATAAGTCTGTTGCACATTATCTGATTCAAACCAACCAA-CAGTCAG 917
Query 889 AAACAAGTGAGGATGGTGAAACTGAAGGTGCTGCAAATAGTCAAGCTTC 937
||||||||||||||| ||||||||| | | ||||| |||||||||||||
Sbjct 918 AAACAAGTGAGGATGATGAAACTGATGCTCCTGCAGATAGTCAAGCTTC 966
Score = 636 bits (344), Expect = 0.0
Identities = 529/610 (87%), Gaps = 46/610 (8%)
Strand=Plus/Plus
Query 976 CTTCAGAAGAAGATCATCTCCTTCTCTTAACTGATGGGATTCAGGACAATCACATTGACG 1035
||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 963 CTTCAGAAGGAGATCATCTCCTTCTCATAACTGATGGGATTCAGGACAATCAAATTGACG 1022
Query 1036 AGAATCTC---GATGACGATGGCACAAATAAGAATCCGGATTCAGCTAGAAAATCATTAA 1092
| |||||| ||||| |||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1023 AAAATCTCGATGATGATGATGGCTCAAACAAGAATCCGGATTCAGCTAGAAAGTCATTAT 1082
Query 1093 GCTTCTTCTCTTCTGGGGACAACCAAACTTCAGTGACTGATGGTCATGTTCTAGGTGATG 1152
||||||| || |||||| ||||||||||||||||||| | | | | ||||||
Sbjct 1083 GCTTCTTGTCGTCTGGGAACAACCAAACTTCAGTGAC---T-G--A-----T-GGTGATC 1130
Query 1153 TCAAGCCATTAGATGTGAACGAGATGGAT-C--C-A--CCTGCGATCATTGATCTTGAGG 1206
||||||||||||||||||| ||| ||||| | | | |||| |||||| ||||||||||
Sbjct 1131 TCAAGCCATTAGATGTGAAAGAGGTGGATCCAGCAACTCCTGTGATCATCGATCTTGAGG 1190
Query 1207 CTCAGTGCTGTGAGACTGAGAGAAGGGCTAACTCTGCAAACAAAGAGAACCGAGAAACAA 1266
|||||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1191 CTCAGTGCAGTGAAACTGAGAGGATGGCTAACTCTGCAAACAAAGAGAACCGAGAAACAA 1250
Query 1267 GAAGCAAGCGAAAGATGTCTCCTGAACCAAACCCAAATAGTATTGGTGGAAGACTGAGAC 1326
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GAAGCAAGCGAAAGATGTCTGCTGAACCAAACCCAAATAGTATTGGTGGAAGACTGAGAC 1310
Query 1327 AGCGTCGTAAGATTCAAGCTTGAATGAGAGAAAGAAGTTTCAGAAGACTATGAATGGAAC 1386
||||||||||||||||||||||| |||||||| |||||||||||||| ||| | |
Sbjct 1311 AGCGTCGTAAGATTCAAGCTTGAGTGAGAGAA-GAAGTTTCAGAAGA----GAA---A-C 1361
Query 1387 TCTGCTTTTGCTGCCTGTAC-T-CTC-A-GGCTAATCAAATGGAAGCTCTTTGTTT-C-- 1439
| |||||||||||| ||||| | ||| | |||||| |||||||||| ||||| ||| |
Sbjct 1362 TATGCTTTTGCTGCATGTACGTACTCTAAGGCTAAACAAATGGAAGATCTTTTTTTTCTT 1421
Query 1440 --C--TTTT-C----GGAGTAGGCATGGATCATGTAAGAACTTGACGGCTTGTCAAATTT 1490
| |||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1422 TTCCATTTTTCTATCGGAGTAGGCATGGATCATGTAAGAACTTGACGGCTTTTCAAATTT 1481
Query 1491 TGTGTTTTGTTGCTGTTACTGATCTGATGTAATGGATGCTAGTTGCACGGTTAATGAATT 1550
||||||||||||||||| |||||||||||||||||| | ||||| |||||||| |||||
Sbjct 1482 TGTGTTTTGTTGCTGTTGGTGATCTGATGTAATGGATTCCAGTTGAACGGTTAAAGAATT 1541
Query 1551 TGCCTAAACC 1560
||||||||||
Sbjct 1542 TGCCTAAACC 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5