BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490928
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacti... 2687 0.0
AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacti... 2206 0.0
AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting f... 542 5e-153
> AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting
factor | chr4:17486647-17489294 FORWARD LENGTH=1814
Length=1814
Score = 2687 bits (1455), Expect = 0.0
Identities = 1698/1813 (94%), Gaps = 26/1813 (1%)
Strand=Plus/Plus
Query 1 GAAGCTTAACGATCGTAATAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 10 GAAGCTTAACGATCGTAACAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAG 69
Query 61 ATCATAGGAAGAAATTAGAATTAGAGGAAGCTCGTAAAGCTGGTCTTGCTCCTGCTGAGG 120
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 70 ATCACAGGAAGAAATTAGAATTAGAGGAAGCTCGTAAAGCTGGTCTCGCTCCTGCTGAGG 129
Query 121 TCGATGAGGATGGCAAAGAAATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCAT 180
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TAGACGAAGATGGCAAAGAAATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCAT 189
Query 181 GGTATCTCAACTCTGAAAAACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTGAACCCG 240
|||||||||| |||||| | |||||||||||||||||||| |||||||||| ||||||||
Sbjct 190 GGTATCTCAAGTCTGAACAGCCGAGTTTGAAGCATCAAAAAAATTGGAAAATTGAACCCG 249
Query 241 AACTCaaaaaaaTATGGTATGATAGAGGTGCAAAGATCCATCAAGCCGAAAAATACCGCA 300
||| |||||| |||||||||||||||||| ||||||| ||||||| ||| |||||||||
Sbjct 250 AACCCAAAAAGATATGGTATGATAGAGGTAAAAAGATCTATCAAGCTGAACAATACCGCA 309
Query 301 AGGGAGCGTGTATAAACTGTGGTGCAATGACGCACAGTTCTAAAGCATGTATGGATAGAC 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 310 AGGGAGCGTGTATAAACTGTGGTGCAATGACTCACAGTTCTAAAGCATGTATGGATAGAC 369
Query 361 CTCGTAAGATTGGAGCTAAATACACAAACATGAACATTGCAGCTGATGAGAAAATCGAGA 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 370 CTCGTAAGATTGGAGCTAAATACACAAACATGAACATTGCTGCTGATGAGAAAATCGAGA 429
Query 421 GTTTTGAACTTGACTATGATGGCAAGAGAGACAGATGGAATGGTTATGATCCTTCATCCT 480
|||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||| |||
Sbjct 430 GTTTTGAACTTGACTATGATGGGAAGAGGGACAGATGGAACGGTTATGATACTTCAACCT 489
Query 481 ACCGTCATGTGGTAGATCGTTATGATGCAAAAGAGGAGGCACGAAAGAAGTATCTCAAGG 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 490 ACCGTCATGTGGTAGATCGTTATGATGCTAAAGAGGAGGCACGAAAGAAGTATCTCAAGG 549
Query 541 AGCAGCAACTTAAGAAACTAGAGGAGAAGAACAATAATGAAAACGGTGATGATGCAACCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 AGCAGCAACTTAAGAAACTAGAGGAGAAGAACAATAATGAAAACGGTGATGATGCAACCA 609
Query 601 GTGATGGGGAGGAATACAATGACGACTTAAGGGTCGATGAAGCCAAGGTTGATGAGAGCA 660
|||||||||||||| || ||||||||| |||||||||||||| |||||||||||||| |
Sbjct 610 GTGATGGGGAGGAAGACCTTGACGACTTGAGGGTCGATGAAGCTAAGGTTGATGAGAGTA 669
Query 661 GGCAGATGGATTTTGCAAAGGTTGAAAAACGTGTTCGAACAACTGGTGGTGGTAGCACAG 720
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 670 GGCAAATGGATTTTGCAAAGGTTGAGAAACGTGTTCGAACAACTGGTGGTGGTAGCACAG 729
Query 721 GAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGAATCTTGATG 780
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 730 GAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCTAAATACCTGTTGAATCTTGATG 789
Query 781 TCAACTCAGCTCATTATGACCCGAAAACTCGATCCATGCGTGAAGATCCACTTCCAGATG 840
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 790 TAAACTCAGCTCATTATGACCCTAAAACTCGGTCCATGCGTGAAGATCCACTTCCAGATG 849
Query 841 CAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATAGAAACAGTGGCCAAGCTT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATAGAAACAGTGGCCAAGCTC 909
Query 901 TGGAGTTCAAACAGCTAAACGTCCATTCATGTGAAGCATTTGACAAGGGACAGGACATGC 960
|||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 910 TGGAGTTCAAACAGATAAACATCCATTCATGTGAAGCATTTGACAAGGGACATGACATGC 969
Query 961 ATATGCAAGCGGCTCCTTCCCAAGCTGAATTGCTCTATAAGAACTTTAAAGTTGCAAAGG 1020
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATATGCAAGCGGCTCCATCCCAAGCTGAATTGCTCTATAAGAACTTTAAAGTTGCAAAGG 1029
Query 1021 AAAAACT-AAAATCTCAGACAAAAGACACAATCATGGAAAAGTACGGGAATGCAGCTACC 1079
||||||| |||| |||||||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 1030 AAAAACTGAAAA-CTCAGACAAAGGACACCATTATGGAAAAGTATGGGAATGCAGCTAC- 1087
Query 1080 A-AAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTGAAAGACAAGTTGAGTATGA 1138
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1088 AGAAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTGAAAGACAAATTGAGTATGA 1147
Query 1139 CAGGGCAGGCAGGATTATAAAGGGACAGGAGGTGATAATTCCAAAGAGCAAATATGAAGA 1198
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 CAGGGCAGGGAGGATTATGAAGGGACAGGAGGTGATAATTCCAAAGAGCAAATATGAAGA 1207
Query 1199 AGATGTTCATGCCAACAATCACACAAGTGTTTGGGGTTCATGGTGGAAAGACCATCAGTG 1258
|||||||||||| ||||||||||||||||||||||| |||||||||||||| || || ||
Sbjct 1208 AGATGTTCATGCTAACAATCACACAAGTGTTTGGGGATCATGGTGGAAAGATCACCAATG 1267
Query 1259 GGGATATAAATGCTGCCAGCAGACCATTCGCAACAGCTACTGCACAGGTTCTGCTGGAAT 1318
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1268 GGGATATAAATGTTGCCAGCAGACAATTCGCAACAGCTATTGCACAGGTTCTGCTGGAAT 1327
Query 1319 TGAAGCTGCAGAGGCGTCCCTTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCTTC 1378
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TGAAGCTGCAGAGGCGTCCATTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCTTC 1387
Query 1379 TAAAGAGAGTCCGAAGAAGGTTGAAGAGAAGAGAATGGCGACATGGGGAACCGATATTCC 1438
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1388 TAAAGAGAGTCCGAAGAAGGTTGAAGAGAAGAAAATGGCGACATGGGGAACTGATATTCC 1447
Query 1439 TGAAGATTTGGAATTGAACGAGGAGGCTCTTGCCAATGCTCTTAAAAAGGAGGATCTAAG 1498
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1448 TGAAGATTTGGAATTGAACGAGGAGGCACTTGCAAATGCTCTTAAAAAGGAGGATCTAAG 1507
Query 1499 TAAGAGGGAAGAAAAAGATGAGAGGAAACGCAAATACAATGTCAAATACACCAACGATGT 1558
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1508 TAGGAGGGAAGAAAAAGATGAGAGGAAACGCAAATACAATGTCAATTACACCAACGATGT 1567
Query 1559 GACTTCGGAAGATATGGAAGCTTATAGAATGAAGAGAGTTCACCATGAGGATCCAATGA- 1617
||| || || || ||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1568 GACCTCCGAGGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCACGAGGACCCAATGAG 1627
Query 1618 AAGATTTCCTCGGCTGATTTAAAC-TCTTT-CCCTTTCACCATATTAACCTGAAGAAACC 1675
|| |||||| |||||||| ||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1628 AA-ATTTCCCCGGCTGAT--AAATGTCTTTTCCCTTTCACCATATTAAGCTGAAGAAACC 1684
Query 1676 TTATTTTTTA-----A-GTCTTTAAATAAGAGACCTTTCTTATTCATATCATTATTTGTT 1729
|| ||||| | | |||||||||||||| |||| |||||||| ||||||||||||
Sbjct 1685 TTGTTTTTAAGTTTCATGTCTTTAAATAAGAC-CCTTG-TTATTCATGTCATTATTTGTT 1742
Query 1730 A--GTCTTCAAGATTCATT-AT-GATT--TTAACAAAACTTATGAAACTAGAATAAAATT 1783
| ||||||| | | || | |||| ||| | ||| ||||||||||||||||| ||
Sbjct 1743 ACTGTCTTCATG-TCCACCCAAAGATTCATTAT-ATAACGTATGAAACTAGAATAAATTT 1800
Query 1784 TCTTAGCCAAATC 1796
|||||||||||||
Sbjct 1801 TCTTAGCCAAATC 1813
> AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting
factor | chr1:24418107-24421292 REVERSE LENGTH=1857
Length=1857
Score = 2206 bits (1194), Expect = 0.0
Identities = 1530/1690 (91%), Gaps = 31/1690 (2%)
Strand=Plus/Plus
Query 1 GAAGCTTAACGATCGTAATAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAG 60
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 40 GAAGCTTCACGATCGT-ATAATAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAG 98
Query 61 ATCATAGGAAG-AAATTAGAATTAGAGGAAGCTCGTAAAGCTGGTCTTGCTCCTGCTGAG 119
| ||||||||| ||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct 99 ACCATAGGAAGCAAATT-GAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGAG 157
Query 120 GTCGATGAGGATGGCAAA-GAAATCAATCCTCACATACCTG-AGTATATGTCAAAAGCTC 177
|| ||||||||||| ||| ||||| |||||||| || || | ||||||||||| ||||
Sbjct 158 GTTGATGAGGATGG-AAAGGAAATTAATCCTCATATTCC-GCAGTATATGTCATCTGCTC 215
Query 178 CATGGTATCTCAACTCTGAAAAACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTGAAC 237
|||||||||| || |||||||||||||||||||||||||||| ||| ||||| | ||| |
Sbjct 216 CATGGTATCTTAATTCTGAAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATC 275
Query 238 CCGAACTCa-aaaaaaT-ATGGTATGATAGAGGTGCAAAGATCCATCAAGCCGAAAAATA 295
|| || | | | || | |||||||||||||||||||||||| |||||| ||||||||
Sbjct 276 CC-AA-TTACACTAAGTCGTGGTATGATAGAGGTGCAAAGATCTTTCAAGCTGAAAAATA 333
Query 296 CCGCAAGGGAGCGTGT-ATAAACTGTGGTGCAATGACGCACAGTTCTAAAGCATGTATGG 354
|||||||||||||||| | ||||||||||||||||||||| | | ||||||| |||||||
Sbjct 334 CCGCAAGGGAGCGTGTCA-AAACTGTGGTGCAATGACGCATACTGCTAAAGCTTGTATGG 392
Query 355 ATAGACCTCGTAAGATTGGAGCTAAATACACAAACATGAACATTGCAGCTGATGAGAAAA 414
|||| |||||||||||||| || || ||||||||||||||||||||| ||||||||||||
Sbjct 393 ATAGGCCTCGTAAGATTGGGGCGAAGTACACAAACATGAACATTGCACCTGATGAGAAAA 452
Query 415 TCGAGAGTTTTGAACTTGACTATGATGGCAAGAGAGACAGATGGAATGGTTATGATCCTT 474
| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 453 TTGAAAGTTTTGAACTTGACTACGATGGCAAGAGGGACAGATGGAATGGTTATGATCCTT 512
Query 475 C-ATCCTACCGTCATGTGGTAGATCGTTATGATGCAAAAGAGGAGGCACGAAAGAAGTAT 533
| | |||||| || |||| |||||| |||||| ||||||||||| ||||||||||||||
Sbjct 513 CGA-CCTACCATCGTGTGATAGATCTTTATGAAGCAAAAGAGGATGCACGAAAGAAGTA- 570
Query 534 C-TCAAGGAGCAGCAACTTAAGAAACTAGAGGAGAAGAACAATAATGAAAACGGTGATGA 592
| | ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 571 CTTGAAGGAGCAGCAACTTAAGAAACTTGAGGAGAAAAACAATAATGAAAAAGGTGATGA 630
Query 593 TGCAACCAGTGATGGGGAGGAATAC-AATGACGACTTAAGGGTCGATGAAGCCAAGGTTG 651
||||| ||||||||||| ||| || || || ||||||||||| ||||||||||||||||
Sbjct 631 TGCAAATAGTGATGGGGAAGAAGACGAA-GATGACTTAAGGGTTGATGAAGCCAAGGTTG 689
Query 652 ATGAGAGCAGGCAGATGGATTTTGCAAAGGTTGAAAAACGTGTTCGAACAACTGGTGGTG 711
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 690 ATGAGAGCAGGCAGATGGATTTTGCAAAGGTTGAAAAGCGTGTTAGAACAACTGGTGGTG 749
Query 712 GTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGA 771
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GTAGCACAGGAACGGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGA 809
Query 772 ATCTTGATGTCAACTCAGCTCATTATGACCCGAAAACTCGATCCATGCGTGAAGATCCAC 831
| || |||||||||||||||||||||||||| |||||||| || ||||||||||| ||||
Sbjct 810 ACCTCGATGTCAACTCAGCTCATTATGACCCTAAAACTCGTTCTATGCGTGAAGACCCAC 869
Query 832 TTCCAGATGCAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATAGAAACAGTG 891
|||||||||||||||||||||| || || ||| |||||||||||||||||||||| ||||
Sbjct 870 TTCCAGATGCAGATCCAAATGACAAGTTTTATCTGGGAGATAATCAATATAGAAATAGTG 929
Query 892 GCCAAGCTTTGGAGTTCAAACAGCTAAACGTCCATTCATGTGAAGCATTTGACAAGGGAC 951
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 930 GCCAAGCTTTGGAGTTCAAACAGCTAAACATCCATTCATGGGAAGCATTTGACAAGGGAC 989
Query 952 AGGACATGCATATGCAAGCGGCTCCTTCCCAAGCTGAATTGCTCTATAAGAACTTTAAAG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 990 AGGACATGCATATGCAAGCGGCTCCTTCCCAAGCTGAATTGCTCTATAAGAGCTTTCAGG 1049
Query 1012 TTGCAAAGGAAAAACTAAAATCTCAGACAAAAGACACAATCATGGAAAAGTACGGGAATG 1071
|||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1050 TTGCAAAGGAGAAACTGAAATCTCAGACAAAGGACACAATCATGGACAAGTACGGGAATG 1109
Query 1072 CAGCTACCA-AAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTGAAAGACAAGTT 1130
||||||| | ||| ||||||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 1110 CAGCTAC-AGAAGATGAAATTCCAATGGAGCTTTTACTTGGGCAAAGCGAAAGGCAAGTT 1168
Query 1131 GAGTATGACAGGGCAGGCAGGATTATAAAGGGACAGGAGGTGATAATT-CCAAAGAGCAA 1189
||||||||| | ||||| ||||||||||| ||||||||||||||| || |||||||| ||
Sbjct 1169 GAGTATGACCGAGCAGGGAGGATTATAAAAGGACAGGAGGTGATA-TTGCCAAAGAGTAA 1227
Query 1190 ATATGAAGAAGATGTTCATGCCAACAATCACACAAGTGTTTGGGGTTCATGGTGGAAAGA 1249
||||||||||||||||||||| ||||||||||| ||||| ||||| |||| ||||||||
Sbjct 1228 ATATGAAGAAGATGTTCATGCTAACAATCACACTAGTGTGTGGGGATCATATTGGAAAGA 1287
Query 1250 CCATCAGTGGGGATATAAATGCTGCCAGCAGACCATTCGCAACAGCTACTGCACAGGTTC 1309
||||| |||||||||||||| |||||||||| ||||||||| || ||||||||||||||
Sbjct 1288 TCATCAATGGGGATATAAATGTTGCCAGCAGATCATTCGCAATAGTTACTGCACAGGTTC 1347
Query 1310 TGCTGGAATTGAAGCTGCAGAGGC-GTCCCTTGATCTGATGAAGGCTAATATTGCTCGCA 1368
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1348 TGCTGGAATTGAAGCTGCAGAGGCTG-CCCTTGATCTGATGAAGGCTAATATTGCTCGCA 1406
Query 1369 AAGAAGCTTCTAAAGAGAGTCCGAAGAAGGTTGAAGAGAAGAGAATGGCGACATGGGGAA 1428
||||||| || ||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 1407 AAGAAGCAACTGAAGAGAGCCCAAAGAAGGTTGAAGAGAAGAGAATGGCGTCATGGGGAA 1466
Query 1429 CCGATATTCCTGAAGATTTGGAATTGAACGAGGAGGCTCTTGCCAATGCTCTTAAAAAGG 1488
| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1467 CTGATATTCCTGAAGATTTGGAGTTGAACGAGGAGGCACTTGCTAATGCTCTTAAAAAGG 1526
Query 1489 AGGATCTAAGTAAGAGGGAAGAAAAAGATGAGAGGAAACGCAAATACAATGTCAAATACA 1548
||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1527 AGGATCTCAGTAGGAGGGAAGAGAAAGATGAGAGGAAACGCAAATACAATGTCAAATACA 1586
Query 1549 CCAACGATGTGACTTCGGAAGATATGGAAGCTTATAGAATGAAGAGAGTTCACCATGAGG 1608
||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1587 ACAACGATGTGACTCCGGAAGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCATGAGG 1646
Query 1609 ATCCAATGAAAGATTTCCTCGGCT-GAT-TTAAACTCT--TTCCCTTTCACCATATTAAC 1664
|||||||||||||||||||| | || || || | |||||||| ||||| | |||
Sbjct 1647 ATCCAATGAAAGATTTCCTCTGAAAGAAGTTGG-CTTTCATTCCCTTTTACCATGT-AAC 1704
Query 1665 CTGAAGAAAC 1674
||||||||||
Sbjct 1705 CTGAAGAAAC 1714
> AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting
factor | chr3:16889461-16890618 REVERSE LENGTH=1158
Length=1158
Score = 542 bits (293), Expect = 5e-153
Identities = 477/563 (85%), Gaps = 23/563 (4%)
Strand=Plus/Plus
Query 24 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCATAGGAAG-AAATTAG-AAT 81
||||||||||||||||||||||||||||||||| |||||||||||||| ||| || |||
Sbjct 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAA--AGGAAT 58
Query 82 TAGAGGAAGCTCGTAAAGCTGGTCTTGCTCCTGCTGAGGTCGATGAGGATGGCAAAG-AA 140
||||||||||||||||||| || |||||||| |||||||| || |||| ||| |||| ||
Sbjct 59 TAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGG-AAAGGAA 117
Query 141 ATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCATGGTAT-CTCAACTCTGAAAA 199
||||||| |||||||||| ||||| || ||| |||||| ||| | ||| ||||||||
Sbjct 118 ATCAATCTTCACATACCTAAGTATTTGACAATTCCTCCATTATATGC-CAAGTCTGAAAA 176
Query 200 ACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTGAACCCGAACTCaaaaaaaT-ATGGT 258
|||||| ||||||||||||||||||||||||||| |||||| || | || || || |
Sbjct 177 ACCGAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTT-TCCACAACATCATATT 235
Query 259 ATGATAGAGGTGCAAAGA-TCCATCAAGCCGAAAAATACCGCAAGGGAGCGTGT-ATAAA 316
|||| |||||||||||| | ||||||||||||| || || || ||||||||| | |||
Sbjct 236 ATGACCGAGGTGCAAAGACTT-ATCAAGCCGAAAAGTATCGGAAAGGAGCGTGTCA-AAA 293
Query 317 CTGTGGTGCAATGACGCACAGTTCT-AAAGCATGTATGGATAGACCTCGTAAGATTGGAG 375
|||||||||||||||||| | | | ||| |||||||||| |||||||||||| |||| |
Sbjct 294 CTGTGGTGCAATGACGCAT-GATGTGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTG 352
Query 376 CTAAATACACAAACATGAACATTGCAGCTGATGAGAAAATCGAGAGTTTTGAACTTGACT 435
| ||||||||| ||| ||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 353 CAAAATACACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACT 412
Query 436 ATGATGGCAAGAGAGACAGATGGAATGGTTATGATCCTTCATCCTACCGTCATGTG-GTA 494
|||||||||| || ||| |||||||||||||||||||||| || || |||||||| | |
Sbjct 413 ATGATGGCAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAG-A 471
Query 495 GATCGTTATGATGCAAAAGAGGAGGCACGAAAGAAGTATCTCAAGGAGCAGCAACTTAA- 553
|||||| |||| ||||||||| | |||||| ||||||| || || ||||| ||||| ||
Sbjct 472 GATCGTCATGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AAT 530
Query 554 -G--AAACTAGAGGAGAAGAACA 573
| |||||||||||||||||||
Sbjct 531 TGCGAAACTAGAGGAGAAGAACA 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88854964650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5