BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490930
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37130.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2490 0.0
> AT4G37130.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:17489467-17492010 FORWARD LENGTH=1879
Length=1879
Score = 2490 bits (1348), Expect = 0.0
Identities = 1563/1662 (94%), Gaps = 34/1662 (2%)
Strand=Plus/Plus
Query 1 GGGGCTTTTGAAtttttttGCTCAACTTCCAAATCGTCGCCGGCGATATAAACCCTAGAT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 14 GGGGCTTTTGAATTTTTTTGCTCAACTTCCAAATCGTCGCCGGCGATAGAAACCCTAGAT 73
Query 61 TTGATTCGCCGCCGGTTATATCCAGCAATGTCGTTGTTGACCCCACAGCAACAACAGACG 120
||||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 74 TTGATTCTCCGTCGGTTATATCCAGCAATGTCGTTTTTTCCCCCACAGCAACAACAGACG 133
Query 121 CCTCAGCCGCTTTTTCAAACTCAGCAA-CA--GTTGTTTCAGCCGCAGCAAACCAATTCC 177
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 134 CCTCAGCCGCTGTTTCAAACTCAGCAAACGTCGTTGTTTCAGCCGCAGCAAACCAATTCC 193
Query 178 CTCTTCTCCCAATCGCAACCGCAGCAAACCAATTCCATCTTCTCGCAATCgcaaccgcag 237
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 194 ATCTTCTCGCAATCGCAGCCGCAGCAAACCAATTCCATCTTCTCGCAATCGCAACCACAG 253
Query 238 cag-c-aa--c-agcaac-cgt--c-gttgtttcagccgcaa-ca--gttc---cagcag 282
|| | || | | | | || | | | || | |||| | ||| |||| |
Sbjct 254 CAAACCAATTCCATCTTCTCGCAACCGCAGCAACAACAGCAAACGTCGTTGTTTCAGCCG 313
Query 283 ca---g--c-agcagca--a-caaca---aaatcagcaacagcagcagcaagtacaacaa 330
|| | | ||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 314 CAACAGTTCCAGCAGCAGCAGCAACAGCTAAATCAGCAACAGCAGCAGCAAGTACAACAA 373
Query 331 cagTTGTATTTGTTCACCAACGATAAAGCTCCGGCGAATTACAGTACCAAATGGGCCGAT 390
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 374 CAGTTGTATTTGTTCACCAACGATAAAGCTCCGGCGAATTACAGTACTAAGTGGGCCGAT 433
Query 391 CTTCATCCCGATTCTCAGAAACTCTTGCTTCAGATTGAAGAGAAGATATTGGAGCATAGA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CTTCATCCCGATTCTCAGAAACTCTTGCTTCAGATTGAAGAGAAGATATTGGAGCATAGA 493
Query 451 AGTGAAAGTCAGAGATTAGATCAGTGTAGTCGACTTTATGATTCTTCTGTATCCAGTGAA 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 AGTGAAAGTCAGAGATTAGATCAGTGTAGTCGACTTTATGATTCTTCTGTATCCAGTGAA 553
Query 511 GGGTTTGAGTTTGATGCTAGCCGCATTGTTCAGGAGCTTGGTGGGATTAATACTGCCATG 570
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 554 GGGTTTGAGTTTGATGCTAGCCGCATTGTTCAGGAGCTTGGTGGAATTAATACTGCCATG 613
Query 571 GACCGACAAAAAGCTGTTCTCCATGAGCTTATGATTGTTGCCAAAGATATGCTGCGTAAT 630
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 614 GACCGACAAAAAGCTGTTTTGCATGAGCTTATGATTGTTGCCAAAGATATGCTGCGTAAT 673
Query 631 GCAGAGATTGCAGTTCGGTCTTTTATGATGCTACAGCCAAGATTTCCTCATTGGAAACAA 690
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GCGGAGATTGCAGTTCGGTCTTTTATGATGCTACAGCCAAGATTTCCTCATTGGAAACAA 733
Query 691 GGAGGAGGAGTTGTTAGTGTTGGTTCTCAACCATCTCAGGGGCAGGGAACAAATCCAGCT 750
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 734 GGAGGAGGAGTTGTTAGTGTTGGTTCTCAACCATCTCAGGGGCAAGGAACTAATCCAGCT 793
Query 751 CCAGCTTCCTCTGGTCAACAACAAGCAGTTACTACGACCGTTCAAGTTTCTGATTTTTAC 810
|||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 794 CCAGCTTCTTCTGGTCAACAACAAGCTGTTACTACAACAGTTCAAGTTTCTGATTTTTAC 853
Query 811 CGTGGGATTCCAAAGAAACCGACAGCTTTTCTACTGCAAACAGTTGGAAGGTTTGAGAAG 870
||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct 854 CGTGGGATTCCGAAGAAACCAACAGCTTTTCTACTGCAGACAGTTGTAAGGTTTGAGAAG 913
Query 871 TATCTAAATGAGTGCCGCCAATGGGTTGAAGAGCTGGAGCAATTGCTCGCCTTGGATTCT 930
||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TATCTTAACGAGTGTCGTCAATGGGTTGAAGAGCTGGAGCAATTGCTCGCCTTGGATTCT 973
Query 931 GACAAGTATAGTCGACATGCTTCCCTTTTAGAATCTCTTCCAAAAGTCATGTCTAATGTT 990
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 974 GACAAGTATAGTCGACATGCTTCTCTTTTAGAATCTCTTCCGAAAGTCATGTCTAATGTT 1033
Query 991 CATGACTTCTTTGTTCATGTGGCTGCTAAGGTAGAGAGTATTCACCAATATATTGAATCA 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 CATGACTTCTTTGTTCATGTGGCTGCTAAGGTAGAGAGTATTCACCAATATATTGAATCA 1093
Query 1051 ATGAGAACATCGTATCTTGCTGACCAGCGCCGAAGAGGAGGATGCCATGATCCGTTTCTT 1110
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1094 ATGAGAACATCGTATCTTGCTGACCAGCGCCGAAGAGGAGAATGCCATGATCCGTTTCTT 1153
Query 1111 GAGGCTGATCGAAGGGAGACAGCAAAGCAGGAAGCAGCTGCTAAAAGAGTCCACCCAACT 1170
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1154 GAGGCTGATCGAAGGGAGACAGCAAAGCAGGAAGCAGCTGCTAAAAGGGTCCACCCAACT 1213
Query 1171 CTGCATCTTCCTGCGTCTACTACAAGTACACAACCCTCAACACAGGTTGCTGGGTTGATT 1230
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 CTGCATCTTCCTGCTTCTACTACAAGTACACAACCCTCAACACAGGTTGCTGGGTTGATT 1273
Query 1231 GCCAGCTCAGCCACTCCCGGGGCTTCAAATCCTCCACAGACATCTGTTCCAACATCAAAC 1290
||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1274 GCCAGCTCAGCTACTCCTGGGGGTTCAAATCCTCCACAGACATCTGTTCCAACATCAAAC 1333
Query 1291 CCTTCTTCAGGAGCTGGTTTTTCGTTTCTCAACACACCTGCTTCTGGACCTTCGTCTTCT 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 CCTTCTTCAGGAGCTGGTTTTTCGTTTCTCAACACACCTGCTTCTGGACCTTCGTCTTCT 1393
Query 1351 ATCTTTGCTACACCATCTTCTACTGCTCCTACCTCGTCTTTGTTTGGACCATCCTCTACT 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1394 CTCTTTGCTACACCATCTTCTACTGCTCCTACCTCGTCTTTGTTTGGACCATCCCCGACT 1453
Query 1411 CCCGCACAGACGCCACTTTTTGGGTCTTCCCCGGCTTCTACATTTGGTTCCGCTCAATCT 1470
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1454 CCCACACAGACGCCACTTTTTGGGTCTTCCCCGGCTTCTACATTTGGTTCTACTCAATCT 1513
Query 1471 TTGTTTGGCCAGACAACTCCATCACTTGCTATGCCTTCACCA-TTTGGAGGTGCTACACC 1529
||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1514 TTGTTTGGCCAGACAACTCCATCACTTACTATGCCTTCAC-AGTTTGGAGGTGCTACACC 1572
Query 1530 AGGATCAGGAGCCAGCTTTGGTTCTATGACAAAATCTTCAAGGCCAAAATCTCGAACTAC 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 AGGATCAGGAGCCAGCTTTGGTTCTATGACAAAATCTTCAAGGCCAAAATCTCGAACTAC 1632
Query 1590 ACGCCGTTAGACACAGGG-TATCCCAAGTTTCATCCATCAGC 1630
||||||||||||| ||| |||| |||||||||||| |||||
Sbjct 1633 ACGCCGTTAGACAT-GGGATATCTCAAGTTTCATCCCTCAGC 1673
Score = 191 bits (103), Expect = 2e-47
Identities = 132/145 (91%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 1624 CATCAGCATCGTTTACATGGCTGGAGTTCATCG---TCACTTGGTGAAGTCGAGTTTGGT 1680
|||| ||||||| ||||||||| |||||||||| ||| ||||||||||||| || |||
Sbjct 1702 CATC-GCATCGTGTACATGGCTTGAGTTCATCGTCTTCAGTTGGTGAAGTCGACTTCGGT 1760
Query 1681 GCAAG-TCGAAGCAGATCCGCATTCTCTGATGCACCAGTTTGTATTTGTGGCGTTATTCA 1739
||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1761 GCAAGTTCGAAGCAGATCCGTATTCTCTTATGCACCAGTTTGTATTTGTGGCGTTATTCA 1820
Query 1740 TTGAATTAATGATTGAATGTTCTTA 1764
||||||| |||||||||||||||||
Sbjct 1821 TTGAATTGATGATTGAATGTTCTTA 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5