BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490932
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37150.1 | Symbols: ATMES9, MES9 | methyl esterase 9 | chr4:... 1253 0.0
AT2G23590.1 | Symbols: ATMES8, MES8 | methyl esterase 8 | chr2:... 62.1 8e-09
> AT4G37150.1 | Symbols: ATMES9, MES9 | methyl esterase 9 | chr4:17492878-17494109
REVERSE LENGTH=930
Length=930
Score = 1253 bits (678), Expect = 0.0
Identities = 779/828 (94%), Gaps = 6/828 (1%)
Strand=Plus/Plus
Query 1 AAAAGAAA-GCAACACACTCACGAAAGAAGAAACAGAGAGGATGAAGCATTATGTGCTTG 59
|||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 13 AAAA-AAAGGCAAAACACTCACGAAAGAAGAAACGGAGAGGATGAAGCATTATGTGCTAG 71
Query 60 TTCACGGAGGCTGCCACGGCGCGTGGTGCTGGTACAAGGTGAAGCCGATTCTGGAACATT 119
||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 72 TTCACGGAGGCTGCCACGGTGCGTGGTGTTGGTACAAGGTGAAGCCGATGCTTGAACATT 131
Query 120 CCGGTCACCGTGTCACGGTTCTTGATCTGACGGCGTC-TGGTGTGAACGTGAGCAGAGTA 178
|||| ||||||||||||||| ||||||| |||||| | |||||||||| |||||||||||
Sbjct 132 CCGGCCACCGTGTCACGGTTTTTGATCTTACGGCG-CATGGTGTGAACATGAGCAGAGTA 190
Query 179 GAAGATATTCAGACTTTGGAGGATTACGCTAAGCCGTTGCTTGAGGTTCTTGAATCGTTT 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 191 GAAGATATTCAGACTTTGGAGGATTTCGCTAAGCCGTTGCTTGAGGTTCTTGAGTCTTTT 250
Query 239 GGCTCGGATGATAAAGTAATCCTCGTCGCGCATAGCCTTGGAGGAATACCAGCTGCTCTT 298
|||||||||||||||||| ||||||||||||||||||| || |||||||| |||||||||
Sbjct 251 GGCTCGGATGATAAAGTAGTCCTCGTCGCGCATAGCCTCGGTGGAATACCGGCTGCTCTT 310
Query 299 GCAGCCGACATGTTTCCTAGTAAAATCTCTGTTGCTGTCTTCGTTACTTCTTTTATGCCC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GCAGCCGACATGTTTCCTAGTAAAATCTCTGTTGCTGTCTTCGTTACTTCTTTTATGCCC 370
Query 359 GACACAACGAATCCACCTTCTTACGTATTCGAAAAGGTTCTCGGGAGCATTACAGAAGAA 418
|||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 371 GACACAACGAATCCACCTTCTTACGTGTTCGAAAAGTTTCTCGGAAGCATTACAGAAGAA 430
Query 419 GAACGTATGGATCT-CGAGTTGGGGAGCTATGGAACAAATGAAGATCCTCTAATGACTGC 477
||||||||||| || |||||| ||||||||||||||| |||| |||| |||| ||||||
Sbjct 431 GAACGTATGGA-CTTCGAGTTAGGGAGCTATGGAACAGATGACCATCCACTAAAGACTGC 489
Query 478 TTTTCTTGGACCTAACTACTTAAAGAATATGTATCTACTTTCTCCTATCGAAGATTATGA 537
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 490 TTTTCTTGGACCTAACTACTTGAAGAATATGTATCTACTTTCTCCTATCGAAGATTATGA 549
Query 538 ATTGGCCAAAATGTTGATGAGAGTTGCACCGGCTATTACTAGTAACCTTACGGGGACTAA 597
|||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 550 ATTGGCCAAAATGTTGATGAGAGTCACACCGGCTATTACTAGTAATCTGACGGGGACTAA 609
Query 598 AAGCTTAACGGAACAAGGATATGGATCGATTACTCGTGTGTATATTGTATGCGGAGAAGA 657
||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 610 AAGCTTAACGGCACAAGGATATGGATCGATTAGTCGTGTGTATATCGTATGCGGAGAAGA 669
Query 658 TAAAGGTATAAGTGTAGATTTCCAACGATGGATGATCGAGAACTCTCCGGTTAAAGAAGT 717
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 670 TAAAGGTATACGTGTAGATTTCCAACGATGGATGATTGAGAACTCTCCGGTTAAAGAAGT 729
Query 718 GATGGTGATCAAAGATGCAGATCACATGCCTATGTTTTCCAAGCCTCATGAACTCTGTGA 777
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 730 GATGGAGATCAAAGATGCAGATCATATGCCTATGTTTTCCAAGCCTCATGAACTCTGTGA 789
Query 778 TCGTCTTCTAAAGATTGCTGATAAATATGCTTAAGCAAGACTATGTAT 825
|||||||||||||||||||||||||||| | ||||||||| ||| |||
Sbjct 790 TCGTCTTCTAAAGATTGCTGATAAATATCCCTAAGCAAGAATATCTAT 837
> AT2G23590.1 | Symbols: ATMES8, MES8 | methyl esterase 8 | chr2:10034607-10036000
REVERSE LENGTH=834
Length=834
Score = 62.1 bits (33), Expect = 8e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 71 TGCCACGGCGCGTGGTGCTGGTACAAGGTGAAGCCG 106
|||| |||||||||||||||||||||||||||||||
Sbjct 118 TGCCTCGGCGCGTGGTGCTGGTACAAGGTGAAGCCG 153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5