BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490933
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37160.1 | Symbols: sks15 | SKU5 similar 15 | chr4:17494705... 2706 0.0
AT2G23630.1 | Symbols: sks16 | SKU5 similar 16 | chr2:10052566... 1184 0.0
AT5G66920.1 | Symbols: sks17 | SKU5 similar 17 | chr5:26722823... 228 2e-58
> AT4G37160.1 | Symbols: sks15 | SKU5 similar 15 | chr4:17494705-17497124
REVERSE LENGTH=1741
Length=1741
Score = 2706 bits (1465), Expect = 0.0
Identities = 1573/1627 (97%), Gaps = 0/1627 (0%)
Strand=Plus/Plus
Query 1 ATGAAACAGACCAATCTGCTGCTATGTAAATTATTCATAGGAACCCTGTTTTGGTTGGGC 60
||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 1 ATGAAACAGACCAATCTCCTGGTATGTAAATTATTCATAGGAGCCCTGTTTTGGTTAGGC 60
Query 61 TCTGTTTTAGTTAATGCAGAAGACCCATATCTGTTCTACACTTGGACTGTTACTTACGGC 120
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 61 TCTGTTTTGGTTAATGCAGAAGACCCATATATGTTCTACACTTGGACTGTTACTTATGGT 120
Query 121 ACACGATATCCTCTAGGTGTTCCTCAAGAGGTCATTCTTATCAATGGACAGTTCCCTGGT 180
||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 ACAAGATCTCCTTTAGGTGTTCCTCAACAGGTCATTCTTATCAATGGACAGTTCCCTGGT 180
Query 181 CCAGCGATTGAAGCGGTCACAAACAACAACATTGTTGTTAATCTCATTAACAAGCTCGAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CCAGCGATTGAAGCGGTCACAAACAACAACATTGTTGTTAATCTCATTAACAAGCTGGAC 240
Query 241 GAGCCATTCCTCATTACCTGGAATGGAGTGAAGCAGAGGAGGACATCGTGGCAAGATGGA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGCCATTCCTCATCACCTGGAATGGAGTGAAGCAGAGGAGGACATCGTGGCAAGATGGA 300
Query 301 GTATTGGGAACAAACTGTCCGATCCAACCAAACTCGAACTGGACTTACCAGTTTCAACTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTATTGGGAACAAACTGTCCGATCCAACCAAACTCGAACTGGACTTACCAGTTTCAACTT 360
Query 361 AAAGATCAAATCGGTACTTACACTTACTTCGCTTCCACGTCAATGCATCGAGCCAGTGGT 420
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 361 AAAGATCAAATCGGTACTTACACTTACTTCGCTTCCACGTCACTGCACCGAGCCAGTGGT 420
Query 421 GCTTTTGGTGCTCTCAACATTAACCAGAGAGCTGTTATTACGACTCCTTATCCAACACCC 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 GCTTTTGGTGCTCTCAACATTAACCAGAGATCTGTTATTACGACTCCTTATCCAACACCC 480
Query 481 GATGGAGATTTCACCCTCCTCGTCTCTGACTGGTTCTCAAATATGACCCACAAGGACTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGGAGATTTCACCCTCCTCGTCTCTGACTGGTTCTCAAATATGACCCACAAGGACTTG 540
Query 541 CGAAAAGGGCTCGACGCAGGCTCTGTTCTTCCTCTTCCTGATGCTCTTCTCATCAATGGA 600
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CGAAAATCGCTCGACGCAGGCTCTGCTCTTCCTCTTCCTGATGCTCTTCTCATCAATGGA 600
Query 601 GTCTCTAAAGGTTTAATCTTTACCGGTCAACAAGGTAAAACATATAAGTTCCGGGTATCG 660
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 GTCTCTAAAGGTTTAATCTTTACCGGTCAACAAGGTAAAACATACAAGTTCCGGGTATCC 660
Query 661 AATGTCGGTATAGCGACATCGATAAATTTTAGGATTCAAAATCACACAATGAGCCTCATT 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATGTCGGTATAGCTACATCGATAAATTTTAGGATTCAAAATCACACAATGAGCCTCATT 720
Query 721 GAAGTAGAAGGCGCTCACACTCTTCAGGAGAGCTATGAGTCGCTTGACGTCCACGTTGGT 780
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 GAAGTAGAAGGCGCTCACACTCTTCAGGAGAGTTATGAGTCGCTTGACGTCCACGTTGGT 780
Query 781 CAGTCCATGACCGTCCTGGTCACTTTAAAAGCTTCTGTGAGGGACTATTTCATCGTGGCC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAGTCCATGACCGTCCTGGTCACTTTAAAAGCTTCTGTGAGGGACTATTTCATCGTGGCC 840
Query 841 TCAACCCGGTTTACTAAACCGGTACTAACCACAACCGCGAGTCTCCGTTACCAAGGCTCC 900
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCAACCCGGTTTACAAAACCGGTACTAACCACAACCGCGAGTCTCCGTTACCAAGGCTCC 900
Query 901 AAAAACGCTGCATATGGGCCCCTCCCCATTGGTCCTACTTACCATATCCATTGGTCTATG 960
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 901 AAAAACGCTGCATATGGGCCTCTCCCCATTGGTCCTACTTACCATATCCATTGGTCCATG 960
Query 961 AAACAAGCAAGAACCATAAGGATGAATTTGACGGCAAATGCTGCAAGGCCAAACCCACAA 1020
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAACAAGCAAGAACCATTAGGATGAATTTGACGGCAAATGCTGCAAGGCCAAACCCACAA 1020
Query 1021 GGATCATTTCATTACGGGACTATACCGATAAACCGAACTATAGTCCTAGCCAATGCGGCC 1080
|||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||
Sbjct 1021 GGATCATTTCATTACGGGACCATACCAATAAACCGAACTCTAGTCCTAGCCAATGCAGCC 1080
Query 1081 ACATTGATCTACGGGAAACTTCGGTACACGGTAAACCGAATATCATACATCAACCCAACA 1140
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1081 ACATTGATCTACGGGAAGCTTCGGTACACAGTAAACCGAATATCATACATCAACCCAACA 1140
Query 1141 ACACCATTGAAACTCGCCGATTGGTATAACATTTCGGGCGTGTTCGATTTCAAGACAATC 1200
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1141 ACACCATTGAAACTCGCTGATTGGTACAACATCTCGGGCGTGTTCGATTTCAAGACAATC 1200
Query 1201 ATTAGCACTCCAACAACCGGACCCGCTCATTTTGGTACATCGGTTATCAACGTTGAACTT 1260
||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 1201 ATTAGCACTCCAACAACCGGACCGGCTCATATTGGTACATCGGTTATCGACGTTGAACTT 1260
Query 1261 CATGAGTTCGTCGAAATCGTTTTCCAAAACGACGAAAGATCAATTCAATCTTGGCACATG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CATGAGTTCGTCGAAATCGTTTTCCAAAACGACGAAAGATCAATTCAATCTTGGCACATG 1320
Query 1321 GACGGTACTAGCGCCTATGCTGTCGGATACGGATCAGGAACATGGAATGTGACCATGAGG 1380
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1321 GACGGTACTAGCGCCTATGCTGTCGGATACGGGTCAGGGACATGGAACGTGACCATGAGG 1380
Query 1381 AAACGTTACAACTTGGTTGATGCTGTTCCAAGACACACTTTTCAGGTGTATCCGTTATCG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AAACGTTACAACTTGGTTGATGCTGTTCCAAGACACACTTTTCAGGTGTATCCGTTATCG 1440
Query 1441 TGGACAAGCATATTGGTGTCATTAGATAACAAAGGAATGTGGAATCTTAGGTCACAAATA 1500
||||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1441 TGGACAACCATATTGGTGTCGTTGGATAACAAAGGAATGTGGAATCTAAGGTCACAAATA 1500
Query 1501 TGGTTGAGGAGGTATTTAGGACAAGAGCTTTATGTTCGTGTTTGGAACGATGAGAAGTCT 1560
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1501 TGGTCGAGGAGGTATTTAGGACAAGAGCTCTATGTTCGTGTTTGGAACGATGAGAAGTCT 1560
Query 1561 CCCTACACTGAAGCTGAACCGCCTCTTAACGCTCTTTATTGCGGCAAAGCCAAACGTCCC 1620
| ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||
Sbjct 1561 CTCTACACTGAAGCTGAGCCTCCTCTTAACGTTCTTTATTGCGGCAAAGCCAAACGTCCC 1620
Query 1621 ATTTAGA 1627
||||||
Sbjct 1621 CTTTAGA 1627
> AT2G23630.1 | Symbols: sks16 | SKU5 similar 16 | chr2:10052566-10055317
REVERSE LENGTH=1647
Length=1647
Score = 1184 bits (641), Expect = 0.0
Identities = 1286/1593 (81%), Gaps = 62/1593 (4%)
Strand=Plus/Plus
Query 59 GCTCTGTTTTAGT--T-AATGCAGAAGACCCATATCTGTTCTACACTTGGACTGTTACTT 115
|||||||||| || | || ||||| ||||| || || |||| |||||||||||||||||
Sbjct 59 GCTCTGTTTTTGTGATAAACGCAGAGGACCCCTACCTTTTCTTCACTTGGACTGTTACTT 118
Query 116 ACGGCA-CACGATATCCTCTAGGTGTTCCTCAAGAGGTCATTCTTATCAATGGACAGTTC 174
| || | || ||| ||| |||||||||||||| |||| |||||||| ||||| ||||||
Sbjct 119 ATGGAACCA-GATCGCCTTTAGGTGTTCCTCAACAGGTTATTCTTATTAATGGCCAGTTC 177
Query 175 CCTGGTCCAGCGATTGAAGCG-GTCACAAACAACAACATTGTTGTTAATCTCATTAACAA 233
|||||||| | ||||||| | || |||||||| || || ||||||||| ||||||||||
Sbjct 178 CCTGGTCCTCCAATTGAAG-GTGTAACAAACAATAATATCGTTGTTAATGTCATTAACAA 236
Query 234 GCTCGACGAGCCATTCCTCATTACCTGGAATGGAGTGAAGCAGAGGAGGACATCGTGGCA 293
||| ||||| || |||||||| |||||||| ||| | || ||||||| || ||||||||
Sbjct 237 GCTTGACGAACCTTTCCTCATCACCTGGAACGGAATTAAACAGAGGAAGATGTCGTGGCA 296
Query 294 AGATGGAGTATTGGGAACAAACTGTCCGATCCAACCAAACTCGAACTGGACTTACCAGTT 353
||| || || ||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 297 AGACGGTGTTTTGGGAACAAACTGTCCGATCCAACCAAAATCGAGTTGGACTTACCATTT 356
Query 354 TCAACTTAAAGATCAAATCGGTACTTACACTTACTTCGCTTCCACGTCAATGCATCGAGC 413
||||||||| || |||||||||||||| | ||||| ||||| ||||| |||||| ||||
Sbjct 357 TCAACTTAAGGACCAAATCGGTACTTATGCATACTTTGCTTCAACGTCGATGCATAGAGC 416
Query 414 CAGTGGTGCTTTTGGTGCTCTCAACATTAACCAGAGAG-CTGTTAT-TACGACTCCTTAT 471
||||||||||||||||| || ||| |||||||||| | | || || | || ||||||
Sbjct 417 AAGTGGTGCTTTTGGTGCACTTAACGTTAACCAGAG-GTCAGTCATCTTCGT-TCCTTAC 474
Query 472 CC-AACACCCGATGGAGATTTCACCCTCCTCGTCTCTGACTGGTTCTCAA-ATATGACCC 529
|| || ||| || | || ||||| ||||||||| ||| |||| | || || |||
Sbjct 475 CCTAA-ACCAGACGCTGACTTCACTCTCCTCGTCAGTGATTGGTAC--AAGATGGGAC-- 529
Query 530 ACAAGGA-CTTGCGAAAAG-GGCTCGACGCAGGCTC-TGTTCTTCCTCTTCCTGATGCTC 586
| ||||| || || ||| | |||||||| || | || || |||||||| ||| |||| ||
Sbjct 530 ATAAGGAACT-GC-AAAGGAGGCTCGACTCAAG-TCGTGCTCTTCCTCCTCCGGATGGTC 586
Query 587 TTCTCATCAATGGAGTCT-CTAAAGGTTTAATCTTTACCGGTCAACAAGGTAAAACATAT 645
|||||||||| || | || ||||||||||| |||||||||||||||| || || | ||||
Sbjct 587 TTCTCATCAACGGTG-CTTCTAAAGGTTTAGTCTTTACCGGTCAACATGGCAAGATATAT 645
Query 646 AAGTTCCGGGTATCGAATGTCGGTATAGCGACATCGATAAATTTTAGGATTCAAA-ATCA 704
| ||| ||| |||||||||| || ||| |||||||||| || |||||||| ||| | ||
Sbjct 646 AGGTTTCGGATATCGAATGTTGGGATATCGACATCGATTAACTTTAGGATACAAGGA-CA 704
Query 705 CACAATGAGC-CTCATTGAAGTAGAAGGCGCTCACACTCTTCAGGAGAG-CTATGAGTCG 762
|| |||| | ||| | ||||||||||| |||||||||| || ||| | |||||| |||
Sbjct 705 CATGATGA-CTCTCGTCGAAGTAGAAGGTTCTCACACTCTGCAAGAG-GTCTATGAATCG 762
Query 763 CTTGACGTCCACGTTGGTCAGTCCATGACCGTCCTGGTCACTTTAAAAGCTTCTGTGAGG 822
|||||| | |||||||| ||||| ||||||| ||||||| || || ||| | |||| |
Sbjct 763 CTTGACATACACGTTGGCCAGTCTGTGACCGTGTTGGTCACATTGAAGGCTCCAGTGAAG 822
Query 823 GACTATTTCATCGTGGCCTCAACCCGGTTTACTAAACCGGTACTAACCACAACCGCGAGT 882
||||| ||||||||||| ||||| |||||||| ||||| |||||||||| || | || |
Sbjct 823 GACTACTTCATCGTGGCTTCAACTCGGTTTACCAAACCTATACTAACCACCACAG-GAAT 881
Query 883 C-TCCGTTACCAAGGCTCCAAAAAC-G-C--TGCATATGGGCCCCTCCCCATTGGTCCTA 937
| || | |||||||| ||||||| | | | | || || ||||| |||||||||||||
Sbjct 882 CCTCAGCTACCAAGGTTCCAAAATCAGACCAT-CACAT---CCCCTTCCCATTGGTCCTA 937
Query 938 CTTACCATATCCATTGGTCTATGAAACAAGCAAGAACCATAAGGATGAATTTGACGGCAA 997
||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||| |
Sbjct 938 CTTACCATATCCATTGGTCCATGAAACAAGCAAGAACCATCAGGCTAAATTTGACGGCGA 997
Query 998 ATGCTGCAAGGCCAAACCCACAAGGATCATTTCATTACGGGACTATACCGATAAACCGAA 1057
|||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 998 ATGCAGCAAGGCCAAATCCACAAGGATCCTTTCACTACGGTACTATACCGATAAATCGAA 1057
Query 1058 CTATAGTCCTAGCCAATGC--G-GCCACATTGATCTACGGGAAACTTCGGTACACGGTAA 1114
|| | || ||||||| | | |||| | |||| | ||||||||||||||||| || |
Sbjct 1058 CTTTTGTTTTAGCCAACGGAAGAGCCA--T-GATCAATGGGAAACTTCGGTACACAGTGA 1114
Query 1115 ACCGAATATCATACATCAACCCAACAACACCATTGAAACTCGCCGATTGGTAT-AACATT 1173
|||| | || ||| | |||||| |||| ||||||||| | ||||| |||| | ||||||
Sbjct 1115 ACCGTGTGTCCTACGTTAACCCAGCAACTCCATTGAAATTAGCCGACTGGT-TCAACATT 1173
Query 1174 TC-GGGCGTGTTCGATTTCAAGACAATCATTAGCACTCCAACAACC-GGACCCGCTCATT 1231
| ||| |||||| ||||||| || || || | || ||| ||| || |||||| | ||||
Sbjct 1174 CCCGGG-GTGTTCAATTTCAAAACCATTATGAACATTCCCACA-CCAGGACCCTC-CATT 1230
Query 1232 TT-GGTACATCGGT-TATCAACGTTGAACTTCATGAGTTCGTCGAAATCGTTTTCCAAAA 1289
| || || ||||| | | | || | || ||||||| ||||||| |||| ||||| ||
Sbjct 1231 CTCGGAACTTCGGTCTTTGAT-GTGGCTCTCCATGAGTACGTCGAATTCGTGTTCCAGAA 1289
Query 1290 CGACGAAAGATCAATTCAATCTTGGCACATGGACGGTACTAGCGCCTATGCTGTCGGATA 1349
| |||| |||| || |||||||||||| | ||||| ||||| || |||| ||| |||||
Sbjct 1290 CAACGAGGGATCTATACAATCTTGGCACCTTGACGGCACTAGTGCATATGTTGTTGGATA 1349
Query 1350 CGGATCAGGAACATGGAATGTGACCATGAGGAAACGTTACAACTTGGTTGATGCTGTTCC 1409
||| || || |||||||| || | | ||||| | |||| || ||||||||||||||| |
Sbjct 1350 CGGGTCGGGCACATGGAACATGGCTAAGAGGAGAGGTTATAATTTGGTTGATGCTGTTTC 1409
Query 1410 AAGACACACTTTTCAGGTGTATCCGTTATCGTGGACAAGCATATTGGTGTCATTAGATAA 1469
||| |||||||||||||| ||||| | |||||||| ||||||||||| |||||||| ||
Sbjct 1410 AAGGCACACTTTTCAGGTTTATCCAATGTCGTGGACGAGCATATTGGTATCATTAGACAA 1469
Query 1470 CAAAGGAATGTGGAATCTT-AGGTCACAAATATGGTTGAGGAGGTATTTAGGACAAGAGC 1528
|| |||||||||||| || |||||||||||||||| ||||| || ||||||||||| |
Sbjct 1470 TAAGGGAATGTGGAAT-TTGAGGTCACAAATATGGTCAAGGAGATACTTAGGACAAGAAC 1528
Query 1529 TTTATGTTCGTGTTTGGAACGATGAGAAGTCTCCCTACACTGAAGCTGAACCGCCTCTTA 1588
| ||||||||||| |||||| | |||||||||| ||||||||| | || || ||| |||
Sbjct 1529 TCTATGTTCGTGTATGGAACAACGAGAAGTCTCTTTACACTGAATCCGAGCCTCCTGTTA 1588
Query 1589 ACGCTCT-TTATTGCGGCAAAGCCAAACGTCCC 1620
| | ||| || ||||||||| ||||||| ||||
Sbjct 1589 ATGTTCTCTT-TTGCGGCAAGGCCAAACATCCC 1620
> AT5G66920.1 | Symbols: sks17 | SKU5 similar 17 | chr5:26722823-26725626
FORWARD LENGTH=2037
Length=2037
Score = 228 bits (123), Expect = 2e-58
Identities = 252/313 (81%), Gaps = 14/313 (4%)
Strand=Plus/Plus
Query 93 GTTCTACACTTGGACTGTTACTTACGGCA-CACGATATCCTCTAGGTGTTCCTCAAGAGG 151
||| |||||||||||||| ||||| |||| | | |||||| |||||||||||| |||
Sbjct 251 GTTTTACACTTGGACTGTGACTTATGGCATTA-TCTCTCCTCTTGGTGTTCCTCAACAGG 309
Query 152 TCATTCTTATCAATGGACAGTTCCCTGGTCCAGCGA-TTGAAGCGGTCACAAACAACAAC 210
| ||||| |||||||| ||||| ||||||||| | |||||| || || ||| |||||
Sbjct 310 TTATTCTCATCAATGGTCAGTTTCCTGGTCCA-AAACTTGAAGTTGTGACCAACGACAAC 368
Query 211 ATTGTTGTTAATCTCATTAACAAGCTCGACGAGCCATTCCTCATT-ACCTGGAAT-GGAG 268
|| | | || ||||| ||||| || ||| |||| |||||| || ||||||||| |||
Sbjct 369 ATCATCCTCAACCTCATCAACAAACTTGACCAGCCTTTCCTC-TTGACCTGGAATGGGA- 426
Query 269 TGAAGCAGAGG-AGGACATCGTGGCAAGATGGAGTATTGGGAACAAACTGTCCGATCCAA 327
| ||||||||| || || || ||||||||||| || ||||||||||||||||||||||||
Sbjct 427 TTAAGCAGAGGAAGAAC-TCATGGCAAGATGGTGTTTTGGGAACAAACTGTCCGATCCAA 485
Query 328 CCAAACTCGAACTGGACTTACCAGTTTCAA-CTTAAAGATCAAATCGGTACTTACA-CTT 385
|||||||| |||| |||||| | || ||| | |||||||| ||||| |||| || ||
Sbjct 486 CCAAACTCAAACTTCACTTACAAATTCCAAACC-AAAGATCAGATCGGAACTTTCAACT- 543
Query 386 ACTTCGCTTCCAC 398
||||| |||||||
Sbjct 544 ACTTCCCTTCCAC 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5