BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490934 Length=2082 Score E Sequences producing significant alignments: (Bits) Value AT4G37170.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3105 0.0 > AT4G37170.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:17498580-17500655 REVERSE LENGTH=2076 Length=2076 Score = 3105 bits (1681), Expect = 0.0 Identities = 1957/2089 (94%), Gaps = 23/2089 (1%) Strand=Plus/Plus Query 4 ATGAATCACTCAAATGCGAGAAAGTTAAGC-ACTTTTCATGGATTGATATTCAAGAGCAA 62 |||||||| ||||||||||||||||||| | ||| | |||||||| ||||| ||||| || Sbjct 1 ATGAATCATTCAAATGCGAGAAAGTTAA-CTACTCTCCATGGATTTATATTAAAGAGAAA 59 Query 63 CCTATTATCCTCTTCTTACGCCTCACAGAAGCGATTTTCAGATAAAAAGTTCTTCAATTC 122 |||| || || || | ||||||||| |||||| |||||||||||||||||||||||| | Sbjct 60 TCTATCAT-CT-TT-TCACGCCTCACTGAAGCGGTTTTCAGATAAAAAGTTCTTCAATCC 116 Query 123 GAAGC-TCGAGGACGGTGGTGTTGTGGTGGAGCGATTATGTAGAGCTAATAGATTTGGTG 181 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 GAACCAT-GAGGACGGTGGTGTTGTGGTGGAGCGATTATGTAGAGCTAATAGATTTGGTG 175 Query 182 AAGCCATTGATGTTTTATGTGGACAGAAGCTTTTAAGAGAAGCTGTTCAACTTCTGGGTC 241 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 176 AAGCCATTGATGTATTATGTGGACAGAAGCTCTTAAGAGAAGCTGTTCAACTTCTGGGTC 235 Query 242 GAGCAAAGAAGCCACCTGCTTCTACTTATTGCAATCTTATTCAAGTTTGCAGCCAAACAC 301 | || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 236 GGGCTAAGAAGCCACCTGCTTCTACTTATTGCAATCTCATTCAAGTTTGTAGCCAAACAC 295 Query 302 GCGCGCTTGAAGAAGGTAAGAAGGTCCATGAACACATTAGGGCTTCTGGGTTTGTACCTG 361 | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 296 GTGCTCTTGAAGAAGGTAAGAAGGTCCATGAACACATTAGGACTTCTGGGTTTGTACCTG 355 Query 362 GGATTGTTATATGGAACCGTATTTTGGGAATGTATGCGAAATGTGGTAGCTTGGTTGATG 421 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 356 GGATTGTTATATGGAACCGTCTTTTGAGAATGTATGCGAAATGTGGTAGCTTGGTTGATG 415 Query 422 CACGAAAGGTGTTCGACGAAATGCCGGAGAGAGATGTT-TGCTCGTGGAATGTAATGGTT 480 |||| ||||||||||||||||||||| | |||||| || || |||||||||||||||||| Sbjct 416 CACGGAAGGTGTTCGACGAAATGCCGAATAGAGAT-TTGTGTTCGTGGAATGTAATGGTT 474 Query 481 AATGGGTATGCGGATGTTGGGTTGCTTGAGGAAGCGA-GAAATCTGTTTGATGAAATGCC 539 |||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||| | Sbjct 475 AATGGGTATGCGGAGGTTGGGTTGCTTGAGGAAGCGAGGAAGT-TGTTTGATGAAATGAC 533 Query 540 TGAAAGAGATAGTTATTCGTGGACGGCTATGGTTACGGGTTATGTTAAGAAGGATCAGCC 599 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TGAAAAAGATAGTTATTCGTGGACGGCTATGGTTACGGGTTATGTTAAGAAGGATCAGCC 593 Query 600 TGAAGAGGCATTGGT-TCTGTATAGCTTGATGCAAAGAGTACCGAATTCCAA-ACCCAAC 657 ||||||||||||||| | ||||||| ||||||||| | |||||||||| ||| ||| ||| Sbjct 594 TGAAGAGGCATTGGTGT-TGTATAGTTTGATGCAACGGGTACCGAATT-CAAGACCAAAC 651 Query 658 ATTTTTACAGTTTCCAGTGCAGTGGCTGCTGCTGCTG-GGATGAAATGTATCCGTAGAGG 716 |||||||||||||| | |||||| ||||||||||||| || | ||||||||||||||||| Sbjct 652 ATTTTTACAGTTTCTATTGCAGTAGCTGCTGCTGCTGCGG-TTAAATGTATCCGTAGAGG 710 Query 717 GAAAGAGATTCATGGGCATATCGTTCGAGCTGGTTTGGATTCAGATGAGGTGCTCTGGAG 776 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 711 GAAAGAGATTCATGGGCATATCGTTCGAGCTGGTTTGGATTCAGATGAAGTGCTTTGGAG 770 Query 777 TTCGTTGATGGATATGTATGGAAAATGTGGCTGTATTGATGAAGCAAGAAATATCTTTGA 836 ||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct 771 TTCATTGATGGATATGTATGGAAAATGTGGCTGTATCGATGAAGCAAGAAACATATTTGA 830 Query 837 TAAGATAATTGACAAAGATGTTGTGTCGTGGACATCAATGATAGATAGGTATTTCAAGTC 896 |||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 831 TAAGATTGTTGAGAAAGATGTTGTCTCGTGGACATCAATGATAGATAGATATTTCAAGTC 890 Query 897 TAGTAGATGGCGAGAAGGGTTTTCTTTGTTTTCTGAGTTGATAGGTTCTTGTGAACGGCC 956 |||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 891 TAGTAGATGGCGGGAAGGGTTTTCTTTGTTTTCCGAGTTGGTAGGTTCTTGTGAACGGCC 950 Query 957 TAATGAGTATACTTTTTCTGGAGTTTTGAACGCTTGTGCTGATCTCACAACAGAAGAGCT 1016 ||||| || |||||| ||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 951 CAATGAATACACTTTTGCTGGAGTCTTGAATGCTTGTGCTGATCTCACAACAGAAGAGCT 1010 Query 1017 AGGGAGGCAAGTTCATGGATACATGACAAGAGTTGGGTTTGATCCCTACTCTTTTGCATC 1076 ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1011 AGGGAAGCAAGTTCATGGATATATGACAAGAGTTGGGTTTGATCCTTACTCTTTTGCATC 1070 Query 1077 AAGCTCTCTTATAGACATGTACACGAAATGTGGAAACATTGAGAGCGCAAGACACGTTGT 1136 |||||||||| |||| |||||||| ||||||||||| ||||| || |||| ||||||||| Sbjct 1071 AAGCTCTCTTGTAGATATGTACACCAAATGTGGAAATATTGAAAGTGCAAAACACGTTGT 1130 Query 1137 TGACGGATGTCCTAAACCTGATTTAGTTTCTTTGACTTCTTTGATCGGTGGGTATGCCCA 1196 || |||||||||||||| ||||||||||||| ||||||||||||||| |||| ||| || Sbjct 1131 CGATGGATGTCCTAAACCCGATTTAGTTTCTTGGACTTCTTTGATCGGAGGGTGTGCTCA 1190 Query 1197 GAATGGGAAACCTGATGAAGCCTTGAAGTATTTCGACTTGCTCCTCAAATCCGGCACAAA 1256 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1191 GAATGGGCAACCTGATGAAGCCTTGAAATATTTCGACTTGCTCCTCAAATCCGGCACTAA 1250 Query 1257 ACCTGATCATGTTACCTTTGTAAACGTCCTCTCCGCTTGTACTCATGCCGGGTTGGTCGA 1316 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1251 ACCTGACCATGTTACCTTTGTAAACGTCCTCTCCGCTTGTACTCATGCCGGATTGGTCGA 1310 Query 1317 AAAAGGACTGGAATTCTTCTATTCTATAACAGAGAAACACGA-TTTAACGCATACTTCTG 1375 ||||||||| |||||||||||||||||||| ||||||||| | ||| | |||||||||| Sbjct 1311 AAAAGGACTCGAATTCTTCTATTCTATAACTGAGAAACAC-AGGTTATCTCATACTTCTG 1369 Query 1376 ATCATTACACTTGTCTTGTTGATCTATTAGCTCGGTCTGGAAGATTCGAACAGTTAAAAA 1435 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1370 ATCATTACACTTGTCTTGTTGATCTTTTAGCTCGGTCTGGAAGATTCGAACAGTTAAAGA 1429 Query 1436 GCGTCATTAGCGAAATGCCGATGAAACCGAGTAAGTTTCTATGGGCTTCCGTTCTCGGTG 1495 |||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 1430 GCGTCATTAGTGAAATGCCGATGAAACCGAGTAAGTTTCTGTGGGCTTCTGTGCTCGGTG 1489 Query 1496 GGTGTAGCACTTACGGAAACATTGACCTAGCAGAGGAAGCGGCTCAAGAACTGTTCAAGA 1555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1490 GGTGTAGCACTTACGGAAACATTGACCTAGCAGAGGAAGCGGCTCAAGAACTGTTCAAGA 1549 Query 1556 TAGAACCCGAAAATCCTGTTACTTATGTTACAATGGCTAATATCTATGCTGCAGCAGGAA 1615 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1550 TAGAACCCGAAAATCCTGTTACTTATGTTACAATGGCTAACATCTATGCTGCAGCAGGTA 1609 Query 1616 AATGGGAGGAAGAAGGGAAAATGAGAAAGAGAATGCAAGAAATAGGAATCACCAAACAG- 1674 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || Sbjct 1610 AATGGGAGGAAGAAGGGAAAATGAGAAAGAGAATGCAAGAAATCGGAGTCACCAAA-AGG 1668 Query 1675 CCTGGTTCAAGCTGGACCGAGATAAAACGGAAGCGTCATGTATTCATAGCAGCGGATACT 1734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1669 CCTGGTTCAAGCTGGACCGAGATAAAACGGAAGCGTCATGTATTCATAGCAGCGGATACT 1728 Query 1735 TCGCATCCAATGTATAACCAAATAATTGAGTTCTTG-GGTGAATTGAGGGAGAAGATGAA 1793 |||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||| Sbjct 1729 TCGCATCCAATGTATAACCAAATAGTTGAGTTCTTGAGG-GAATTGAGGAAGAAGATGAA 1787 Query 1794 AGAAGAAGGGTATGTTCCCGCTACAAGTCTTGTATTGCACGATGTAGAAGATGAACAAAA 1853 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1788 AGAAGAAGGGTATGTTCCGGCTACGAGTCTTGTATTGCACGATGTAGAAGATGAACAAAA 1847 Query 1854 AGAAGAGAATCTTGTGTATCATAGCGAGAAACTTGCTGTTGCGTTTGCGATTCTATCGAC 1913 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1848 AGAAGAGAATCTTGTGTATCATAGCGAGAAACTTGCTGTTGCATTTGCAATTCTATCGAC 1907 Query 1914 AGAAGAAGGAACGGCGATTAAGGTGTTTAAGAACTTGAGGTCTTGTGTGGATTGTCACAG 1973 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1908 AGAAGAAGGAACGGCGATTAAGGTGTTTAAGAACTTGAGGTCTTGTGTGGATTGTCACGG 1967 Query 1974 TGCTATTAAGTTCATATCGAAAATCACAAAGAGGAAGATAACCATAAGGGACTCGACTCG 2033 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| Sbjct 1968 TGCTATTAAGTTCATATCGAACATCACAAAGAGGAAGATAACCGTAAGGGACTCTACTCG 2027 Query 2034 GTTTCATTGCTTTGAGAATGGACAATGTTCTTGCAGAGATTATTGGTAA 2082 ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2028 GTTTCATTGCTTTGAGAATGGACAATGTTCTTGTGGAGATTATTGGTAA 2076 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103212320520 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5