BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490934
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37170.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3105 0.0
> AT4G37170.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:17498580-17500655 REVERSE LENGTH=2076
Length=2076
Score = 3105 bits (1681), Expect = 0.0
Identities = 1957/2089 (94%), Gaps = 23/2089 (1%)
Strand=Plus/Plus
Query 4 ATGAATCACTCAAATGCGAGAAAGTTAAGC-ACTTTTCATGGATTGATATTCAAGAGCAA 62
|||||||| ||||||||||||||||||| | ||| | |||||||| ||||| ||||| ||
Sbjct 1 ATGAATCATTCAAATGCGAGAAAGTTAA-CTACTCTCCATGGATTTATATTAAAGAGAAA 59
Query 63 CCTATTATCCTCTTCTTACGCCTCACAGAAGCGATTTTCAGATAAAAAGTTCTTCAATTC 122
|||| || || || | ||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 60 TCTATCAT-CT-TT-TCACGCCTCACTGAAGCGGTTTTCAGATAAAAAGTTCTTCAATCC 116
Query 123 GAAGC-TCGAGGACGGTGGTGTTGTGGTGGAGCGATTATGTAGAGCTAATAGATTTGGTG 181
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GAACCAT-GAGGACGGTGGTGTTGTGGTGGAGCGATTATGTAGAGCTAATAGATTTGGTG 175
Query 182 AAGCCATTGATGTTTTATGTGGACAGAAGCTTTTAAGAGAAGCTGTTCAACTTCTGGGTC 241
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 176 AAGCCATTGATGTATTATGTGGACAGAAGCTCTTAAGAGAAGCTGTTCAACTTCTGGGTC 235
Query 242 GAGCAAAGAAGCCACCTGCTTCTACTTATTGCAATCTTATTCAAGTTTGCAGCCAAACAC 301
| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 236 GGGCTAAGAAGCCACCTGCTTCTACTTATTGCAATCTCATTCAAGTTTGTAGCCAAACAC 295
Query 302 GCGCGCTTGAAGAAGGTAAGAAGGTCCATGAACACATTAGGGCTTCTGGGTTTGTACCTG 361
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 296 GTGCTCTTGAAGAAGGTAAGAAGGTCCATGAACACATTAGGACTTCTGGGTTTGTACCTG 355
Query 362 GGATTGTTATATGGAACCGTATTTTGGGAATGTATGCGAAATGTGGTAGCTTGGTTGATG 421
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 356 GGATTGTTATATGGAACCGTCTTTTGAGAATGTATGCGAAATGTGGTAGCTTGGTTGATG 415
Query 422 CACGAAAGGTGTTCGACGAAATGCCGGAGAGAGATGTT-TGCTCGTGGAATGTAATGGTT 480
|||| ||||||||||||||||||||| | |||||| || || ||||||||||||||||||
Sbjct 416 CACGGAAGGTGTTCGACGAAATGCCGAATAGAGAT-TTGTGTTCGTGGAATGTAATGGTT 474
Query 481 AATGGGTATGCGGATGTTGGGTTGCTTGAGGAAGCGA-GAAATCTGTTTGATGAAATGCC 539
|||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||| |
Sbjct 475 AATGGGTATGCGGAGGTTGGGTTGCTTGAGGAAGCGAGGAAGT-TGTTTGATGAAATGAC 533
Query 540 TGAAAGAGATAGTTATTCGTGGACGGCTATGGTTACGGGTTATGTTAAGAAGGATCAGCC 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGAAAAAGATAGTTATTCGTGGACGGCTATGGTTACGGGTTATGTTAAGAAGGATCAGCC 593
Query 600 TGAAGAGGCATTGGT-TCTGTATAGCTTGATGCAAAGAGTACCGAATTCCAA-ACCCAAC 657
||||||||||||||| | ||||||| ||||||||| | |||||||||| ||| ||| |||
Sbjct 594 TGAAGAGGCATTGGTGT-TGTATAGTTTGATGCAACGGGTACCGAATT-CAAGACCAAAC 651
Query 658 ATTTTTACAGTTTCCAGTGCAGTGGCTGCTGCTGCTG-GGATGAAATGTATCCGTAGAGG 716
|||||||||||||| | |||||| ||||||||||||| || | |||||||||||||||||
Sbjct 652 ATTTTTACAGTTTCTATTGCAGTAGCTGCTGCTGCTGCGG-TTAAATGTATCCGTAGAGG 710
Query 717 GAAAGAGATTCATGGGCATATCGTTCGAGCTGGTTTGGATTCAGATGAGGTGCTCTGGAG 776
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 711 GAAAGAGATTCATGGGCATATCGTTCGAGCTGGTTTGGATTCAGATGAAGTGCTTTGGAG 770
Query 777 TTCGTTGATGGATATGTATGGAAAATGTGGCTGTATTGATGAAGCAAGAAATATCTTTGA 836
||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 771 TTCATTGATGGATATGTATGGAAAATGTGGCTGTATCGATGAAGCAAGAAACATATTTGA 830
Query 837 TAAGATAATTGACAAAGATGTTGTGTCGTGGACATCAATGATAGATAGGTATTTCAAGTC 896
|||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 831 TAAGATTGTTGAGAAAGATGTTGTCTCGTGGACATCAATGATAGATAGATATTTCAAGTC 890
Query 897 TAGTAGATGGCGAGAAGGGTTTTCTTTGTTTTCTGAGTTGATAGGTTCTTGTGAACGGCC 956
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 891 TAGTAGATGGCGGGAAGGGTTTTCTTTGTTTTCCGAGTTGGTAGGTTCTTGTGAACGGCC 950
Query 957 TAATGAGTATACTTTTTCTGGAGTTTTGAACGCTTGTGCTGATCTCACAACAGAAGAGCT 1016
||||| || |||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 951 CAATGAATACACTTTTGCTGGAGTCTTGAATGCTTGTGCTGATCTCACAACAGAAGAGCT 1010
Query 1017 AGGGAGGCAAGTTCATGGATACATGACAAGAGTTGGGTTTGATCCCTACTCTTTTGCATC 1076
||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1011 AGGGAAGCAAGTTCATGGATATATGACAAGAGTTGGGTTTGATCCTTACTCTTTTGCATC 1070
Query 1077 AAGCTCTCTTATAGACATGTACACGAAATGTGGAAACATTGAGAGCGCAAGACACGTTGT 1136
|||||||||| |||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct 1071 AAGCTCTCTTGTAGATATGTACACCAAATGTGGAAATATTGAAAGTGCAAAACACGTTGT 1130
Query 1137 TGACGGATGTCCTAAACCTGATTTAGTTTCTTTGACTTCTTTGATCGGTGGGTATGCCCA 1196
|| |||||||||||||| ||||||||||||| ||||||||||||||| |||| ||| ||
Sbjct 1131 CGATGGATGTCCTAAACCCGATTTAGTTTCTTGGACTTCTTTGATCGGAGGGTGTGCTCA 1190
Query 1197 GAATGGGAAACCTGATGAAGCCTTGAAGTATTTCGACTTGCTCCTCAAATCCGGCACAAA 1256
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1191 GAATGGGCAACCTGATGAAGCCTTGAAATATTTCGACTTGCTCCTCAAATCCGGCACTAA 1250
Query 1257 ACCTGATCATGTTACCTTTGTAAACGTCCTCTCCGCTTGTACTCATGCCGGGTTGGTCGA 1316
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1251 ACCTGACCATGTTACCTTTGTAAACGTCCTCTCCGCTTGTACTCATGCCGGATTGGTCGA 1310
Query 1317 AAAAGGACTGGAATTCTTCTATTCTATAACAGAGAAACACGA-TTTAACGCATACTTCTG 1375
||||||||| |||||||||||||||||||| ||||||||| | ||| | ||||||||||
Sbjct 1311 AAAAGGACTCGAATTCTTCTATTCTATAACTGAGAAACAC-AGGTTATCTCATACTTCTG 1369
Query 1376 ATCATTACACTTGTCTTGTTGATCTATTAGCTCGGTCTGGAAGATTCGAACAGTTAAAAA 1435
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1370 ATCATTACACTTGTCTTGTTGATCTTTTAGCTCGGTCTGGAAGATTCGAACAGTTAAAGA 1429
Query 1436 GCGTCATTAGCGAAATGCCGATGAAACCGAGTAAGTTTCTATGGGCTTCCGTTCTCGGTG 1495
|||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1430 GCGTCATTAGTGAAATGCCGATGAAACCGAGTAAGTTTCTGTGGGCTTCTGTGCTCGGTG 1489
Query 1496 GGTGTAGCACTTACGGAAACATTGACCTAGCAGAGGAAGCGGCTCAAGAACTGTTCAAGA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GGTGTAGCACTTACGGAAACATTGACCTAGCAGAGGAAGCGGCTCAAGAACTGTTCAAGA 1549
Query 1556 TAGAACCCGAAAATCCTGTTACTTATGTTACAATGGCTAATATCTATGCTGCAGCAGGAA 1615
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1550 TAGAACCCGAAAATCCTGTTACTTATGTTACAATGGCTAACATCTATGCTGCAGCAGGTA 1609
Query 1616 AATGGGAGGAAGAAGGGAAAATGAGAAAGAGAATGCAAGAAATAGGAATCACCAAACAG- 1674
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 1610 AATGGGAGGAAGAAGGGAAAATGAGAAAGAGAATGCAAGAAATCGGAGTCACCAAA-AGG 1668
Query 1675 CCTGGTTCAAGCTGGACCGAGATAAAACGGAAGCGTCATGTATTCATAGCAGCGGATACT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 CCTGGTTCAAGCTGGACCGAGATAAAACGGAAGCGTCATGTATTCATAGCAGCGGATACT 1728
Query 1735 TCGCATCCAATGTATAACCAAATAATTGAGTTCTTG-GGTGAATTGAGGGAGAAGATGAA 1793
|||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||
Sbjct 1729 TCGCATCCAATGTATAACCAAATAGTTGAGTTCTTGAGG-GAATTGAGGAAGAAGATGAA 1787
Query 1794 AGAAGAAGGGTATGTTCCCGCTACAAGTCTTGTATTGCACGATGTAGAAGATGAACAAAA 1853
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1788 AGAAGAAGGGTATGTTCCGGCTACGAGTCTTGTATTGCACGATGTAGAAGATGAACAAAA 1847
Query 1854 AGAAGAGAATCTTGTGTATCATAGCGAGAAACTTGCTGTTGCGTTTGCGATTCTATCGAC 1913
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1848 AGAAGAGAATCTTGTGTATCATAGCGAGAAACTTGCTGTTGCATTTGCAATTCTATCGAC 1907
Query 1914 AGAAGAAGGAACGGCGATTAAGGTGTTTAAGAACTTGAGGTCTTGTGTGGATTGTCACAG 1973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1908 AGAAGAAGGAACGGCGATTAAGGTGTTTAAGAACTTGAGGTCTTGTGTGGATTGTCACGG 1967
Query 1974 TGCTATTAAGTTCATATCGAAAATCACAAAGAGGAAGATAACCATAAGGGACTCGACTCG 2033
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 1968 TGCTATTAAGTTCATATCGAACATCACAAAGAGGAAGATAACCGTAAGGGACTCTACTCG 2027
Query 2034 GTTTCATTGCTTTGAGAATGGACAATGTTCTTGCAGAGATTATTGGTAA 2082
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2028 GTTTCATTGCTTTGAGAATGGACAATGTTCTTGTGGAGATTATTGGTAA 2076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103212320520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5