BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490940
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2403 0.0
> AT4G37210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:17512259-17514625 FORWARD LENGTH=1800
Length=1800
Score = 2403 bits (1301), Expect = 0.0
Identities = 1632/1783 (92%), Gaps = 57/1783 (3%)
Strand=Plus/Plus
Query 1 AAGTCCGCCaaaaaaaGCGAAGAGAGGGTTTTACTTTTACGACGATACAACAACTCTTGC 60
||||||||||||||||||||||||||||||||| | ||||| | | |||||| |
Sbjct 4 AAGTCCGCCAAAAAAAGCGAAGAGAGGGTTTTA-----A-TACGATTC--C-ACTCTT-C 53
Query 61 -CAACAAATTTGACGTTTTTGTTCTTCCAATTTCAAATTCACACAG-AAAAATCGT-AAT 117
|||||||||||||||||||||||||| || ||||||||||| ||| ||||||| | |||
Sbjct 54 TCAACAAATTTGACGTTTTTGTTCTTCGAAATTCAAATTCACCCAGAAAAAATC-TCAAT 112
Query 118 CTACGATGGTTGAAGAATCAGCTTCAGCATCGGAAGCTTCGGTGATACAAACCCTAACCG 177
| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 113 CCGCGATGGTTGAAGAATCAGCTTCTGCGTCGGAAGCTTCGGTGATACAAACCCTAACCG 172
Query 178 AGCCTGCGACGGAGATACCGCAAACCCTAGAACCTAACCTAGCCTCAATCGAAGCCACCG 237
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 AGCCGGCGACGGAGATTGCGCAAACCCTAGAACCTAACCTAGCCTCAATCGAAGCCACCG 232
Query 238 TCGAATCTGTTGTGCAAGGAGGCACTGAGTCGACTTCCAACAACGATGCTAATAACAATA 297
||||||| ||||| || ||||||||||| ||||||| |||||||| ||||||||||| |
Sbjct 233 TCGAATCGGTTGTTCAGGGAGGCACTGAATCGACTTGTAACAACGACGCTAATAACAACA 292
Query 298 ACGCCGCCGATAGTGCCGCTACTGAGGTTTGTGATGAGGAGCGTGAGAAGACGCTTGAGT 357
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ACGCCGCTGACAGTGCTGCTACTGAGGTTTGTGATGAGGAGCGTGAGAAGACGCTTGAGT 352
Query 358 TCGCTGAGGAATTGACGGAGAAAGGCTCTGTGTTTTTGAAAGAGAATGATTTCGCTGAAG 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 353 TCGCTGAGGAATTGACGGAGAAAGGCTCTGTGTTTTTGAAAGAGAACGATTTCGCTGAAG 412
Query 418 CCGTCGATTGCTTCAGCCGTGCCCTCGAGATCAGGGTTGCACATTTTGGTGAACTTGATG 477
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 413 CCGTCGATTGCTTCAGCCGTGCTCTCGAAATCAGGGTTGCACATTATGGTGAACTTGATG 472
Query 478 CTGAGTGTGTAAACGCATACTATCGATATGGATTAGCTCTCCTGG-AGAAGGCTCAAGCT 536
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 473 CTGAGTGTATAAACGCATACTATCGATATGGATTAGCTCTCCTGGCA-AAGGCTCAAGCT 531
Query 537 GAAGCTGATCCACTTGGTAACATGCCTAAGAAAGAAGGTGAAGTTCAGCAAGAGTGTAGC 596
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 532 GAAGCTGATCCACTTGGGAACATGCCTAAGAAAGAAGGTGAAGTTCAGCAAGAGTCCAGC 591
Query 597 AATGGTGAATCTTTGGCTCCATCTGTTGTTTCTA-GTAACACGGAGAGACAAGGGAGTTC 655
||||||||||| ||||||| ||||||||||| | || || | |||||||||||||||||
Sbjct 592 AATGGTGAATCGCTGGCTCCTTCTGTTGTTTC-AGGTGACCCAGAGAGACAAGGGAGTTC 650
Query 656 AAGTGGGCAAGATGGTTCTGGTGGTAAAGACCAAGGAGAGGATGGTGAAGATTGTCAAGA 715
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AAGTGGGCAAGAAGGTTCTGGTGGTAAAGACCAAGGAGAGGATGGTGAAGATTGTCAAGA 710
Query 716 TGATGACCTATCTGATGCTGA---TG--G-TGATGAAGATGAGTCTGATTTGGATATGGC 769
||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 711 TGATGACCTATCTGATGCTGATGGTGATGCTGATGAAGATGAGTCTGATTTGGATATGGC 770
Query 770 CTGGAAAATGCTGGACATTGCAAGGGCTATTACTGACAAACAGTCTACTGAGACAATGGA 829
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 771 CTGGAAAATGCTGGACATTGCTAGGGTTATTACTGACAAACAGTCTACTGAGACAATGGA 830
Query 830 AAAAGTGGATATACTCTGTTCGCTTGCTGAAATTTCCTTGGAAAGAGAGGACATCGAGTC 889
||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 831 AAAAGTGGATATACTCTGTTCGCTTGCTGAAGTGTCCTTGGAAAGAGAGGACATTGAGTC 890
Query 890 TTCCCTGACTGACTACAAGAATGCATTGTCCATCTTGGAGCGATTGGTTGAGCCCGACAG 949
||||||| ||||||||||||||||||| |||||||| ||| || ||||||||||||||||
Sbjct 891 TTCCCTGTCTGACTACAAGAATGCATTATCCATCTTAGAGAGACTGGTTGAGCCCGACAG 950
Query 950 TCGACACACAGCTGAATTAAACTTCCGCATATGCATCTGTCTAGAAACTGGATGTCAGCC 1009
||||| |||||||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 951 TCGACGCACAGCTGAATTAAACTTCCGCATCTGCATTTGTCTTGAGACTGGATGTCAGCC 1010
Query 1010 TAAGGAAGCAATACCGTATTGTCAAAAAGCTATGTTCATCTGCAAAGCAAGGATGGAGAG 1069
||||||||||||||| ||||||||||||||| |||| || |||||||| ||||||||||
Sbjct 1011 TAAGGAAGCAATACCATATTGTCAAAAAGCTTTGTTAATATGCAAAGCTCGGATGGAGAG 1070
Query 1070 GCTCAGTAATGAGATCAAAGGTGCATCTTGTTCAGCAACTTCCTCAACCGTCTCTGAAAT 1129
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1071 GCTCAGTAATGAAATCAAAGGTGCATCTGGTTCAGCAACTTCCTCAACCGTCTCTGAAAT 1130
Query 1130 AGATGAAGGCATCCAACAATCATCCAATGTTCCTTACATTGATAAATCTGCTTCAGACAA 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGATGAAGGCATCCAACAATCATCCAATGTTCCTTACATTGATAAATCTGCTTCAGACAA 1190
Query 1190 AGAAGCTGAGATTGGAGTCTTAGCTGGTCTCGCTGAAGATCTAGAAAAGAAGGCAAGAAA 1249
||||| |||||| |||| |||||||||||||||||||||||||||||||||| |
Sbjct 1191 AGAAGTTGAGATCGGAGACTTAGCTGGTCTCGCTGAAGATCTAGAAAAGAAG-C------ 1243
Query 1250 ACTAAACCTATCACTTGAGGATTTGAAACAACAAGCAGAGAACCCAAAGCAAGTTCTTGC 1309
| | |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1244 --T-----T-------GAGGATTTAAAACAACAAGCAGAGAACCCAAAGCAGGTTCTTGC 1289
Query 1310 TGAGCTAATGGGCATGGTATCAGGTAAGGCCAC-TGCTAGTGACAAGGTTGTTCCTGCTG 1368
||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||
Sbjct 1290 TGAGCTAATGGGCATGGTATCAGCTAAG-CCAAATGCCAGTGACAAGGTTGTTCCTGCTG 1348
Query 1369 CTGCTGCTGAAATGAGCTCTTCTAGGATGGGAACTGTGAATACCAATTTCGGGAAAGAAT 1428
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1349 CTGCTG---AAATGAGCTCTTCTAGGATGGGAACTGTGAACACCAATTTCGGGAAAGATT 1405
Query 1429 TAGAGTCACCTACGGTCTCAACCGCTCATACAGGTGCAGCAGGAGGAGGAGGAGCATCAG 1488
||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1406 TAGAGTCGCCTACAGTCTCAACCGCTCATACCGGTGCAGCAGGAGGAGGAGCAGCATCAG 1465
Query 1489 GTGTTACTCATCT-GGGTGTTGTTGGAAGAGGAGTGAAGAGAGTTTTGATGAATGCAACC 1547
|||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1466 GTGTTACTCA-CTTGGGTGTTGTTGGAAGAGGAGTGAAGAGAGTTTTGATGAATACAACC 1524
Query 1548 TCTG-TCGAATCAAGTGCATCAAAGAAACCAGCTCCCGAATTTTCAGACAAAGCAGATGG 1606
|| | | |||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1525 TC-GATTGAATCAAGTGCATCAAAGAAACCAGCTCTAGAGTTTTCAGACAAAGCAGATGG 1583
Query 1607 CAACTCCTCTTGAAAGCGGAAAAAGGTATAAAAATTTCTATTACTACTTAAGTTT-TAAC 1665
||||||||||||||| |||||||||||||||||||| || |||||| | |||| | ||||
Sbjct 1584 CAACTCCTCTTGAAACCGGAAAAAGGTATAAAAATTCCTGTTACTAGTGAAGTATCTAAC 1643
Query 1666 CGAAGAAAACTGAGAAACACATTTGGTATCATCCTCATGGATCTTCCAAGACTAGATTTT 1725
| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1644 CTAAGAAAACTGAGAAAAACATTTGGTATCTTCCTCATGAATCTTCCAAGACTAGATTTT 1703
Query 1726 CAGGTT-ATTGTATTGTAATGGGGTCCGTACTTACTGCTTTTT 1767
|||||| || || ||||||||| |||||||||| || ||||||
Sbjct 1704 CAGGTTCAT-GTTTTGTAATGGAGTCCGTACTTGCTACTTTTT 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5