BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490944
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1011 0.0
> AT4G37240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G23690.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr4:17524461-17525159 FORWARD
LENGTH=699
Length=699
Score = 1011 bits (547), Expect = 0.0
Identities = 600/625 (96%), Gaps = 6/625 (1%)
Strand=Plus/Plus
Query 51 AATACAAATGGGTATATGCAGCTCGAGCGAGTCGACTCAAGTGGCGACGGCGAAGCTGAT 110
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 79 AATACATATGGGTATATGCAGCTCGAGCGAGTCGACTCAAGTCGCGACGGCGAAGCTGAT 138
Query 111 CTTACAAGATGGGAGGATGATGGAGTTTGCGAATCCCGTTAAAGTTGGATACGTTTTGCT 170
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 139 CTTACAAGATGGGAGGATGATGGAGTTTGCGAATCCCGTTAAAGTCGGATACGTTTTGCT 198
Query 171 CAAGTATCCGATGTGTTTTATCTGTAACTCCGACGATATGGACTTTGACGACGCCGTTGC 230
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 199 CAAGTATCCGATGTGTTTTATCTGCAACTCCGACGATATGGACTTTGACGACGCCGTTGC 258
Query 231 CGCCATTAGCGCCGATGAAGAGCTTCAGCTTGGTCAGATATACTTTGCTCTTCCTCTTTG 290
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CGCTATTAGCGCTGACGAAGAGCTTCAGCTTGGTCAGATATACTTTGCTCTTCCTCTTTG 318
Query 291 TTGGCTTCGTCAGCCACTTAAAGCGGAGGAGATGGCTGCATTGGCCGTTAAAGCTAGCTC 350
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 319 TTGGCTTCGTCAGCCACTTAAAGCTGAGGAGATGGCTGCATTGGCCGTTAAAGCTAGCTC 378
Query 351 TGCGCTCATGCgaggaggaggaggaggaggTTGTCGCCGGAAATGTGTCGATCCTATTGT 410
||||||||| || |||| || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 379 TGCGCTCAT--GA-GAGGTGGTGGAGGAGGTTGTCGCCGGAAATGTGTCGAGCCTATCGT 435
Query 411 TTCTGATAAGCTTCGAATGAGAGTTGGCTCCGGTGATGATACGGTGGGTTCCGGCTCCGG 470
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 436 TTCTGATAAGCTTCGAATGAGAGTTGGCTCCGGTGATGATACGGTGGGTTCAGGATCCGG 495
Query 471 GAGGAGGAAAGGGAGGAACGGTGACGGTGGTGGTAGTGTTAGCAGTAGCCGGAGGAGGAA 530
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 496 GAGGAGGAAAGTGAGGAACGGTGATGGTGGTGGTAGTGTTAGTAGTAGCCGGAGGAGGAA 555
Query 531 ATGTTACGCGGCGGAGTTGAGTACGATAGATGAGTGAAGGGTAGTTTTGGAATTTTGATT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ATGTTACGCGGCGGAGTTGAGTACGATAGATGAGTGAAGGGTAGTTTTGGAATTTTGATT 615
Query 591 AAATTTGGGGGTTTAATT-GTGGATAGTGTAA-TTATGTTGGGGGCCTATTAGTCATTTA 648
||||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 616 AAATTTGTGGGTTTAATTTGTGGATAGTGTAAATTATGTTGGGG-CCTATTAGTCATTTA 674
Query 649 ATGAAGAAGCAATTTGCATATTGGC 673
||||||| |||||||||||||||||
Sbjct 675 ATGAAGATGCAATTTGCATATTGGC 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5