BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490949
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36850.1 | Symbols: | PQ-loop repeat family protein / trans... 1051 0.0
> AT4G36850.1 | Symbols: | PQ-loop repeat family protein / transmembrane
family protein | chr4:17353291-17355891 REVERSE LENGTH=1372
Length=1372
Score = 1051 bits (569), Expect = 0.0
Identities = 625/652 (96%), Gaps = 3/652 (0%)
Strand=Plus/Plus
Query 1 ATGGTGTCTTTAGGTTACTGCTTGAAGGAGAAGAAGACATGCGTGAGATGGGTAGAGAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 70 ATGGTGTCTTTAGGTTACTGCTTGAAGGAGAAGAAGACATGCGTGAGATGGGTAGAGATA 129
Query 61 TACTTCGACGACTGTCTATGTAACCTAAACGATGACGTTTCGTTTGCACTTGGAATTGCT 120
|||||||| |||||||| |||||| ||||||| |||||||| || ||||||||||| |||
Sbjct 130 TACTTCGATGACTGTCTCTGTAACTTAAACGACGACGTTTCATTCGCACTTGGAATCGCT 189
Query 121 AGCCTCCTCTGTTGGGGCGTCGCAGAGATTCCTCAGATCATCACTAACTTCCGTACAAAG 180
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 190 AGCCTCCTCTGTTGGGGAGTCGCAGAGATTCCTCAGGTCATCACTAACTTCCGTACAAAG 249
Query 181 TCAAGTCACGGTGTCTCTCTCTCCTTCCTCCTCGCTTGGGTCGCCGGTGATATCTTCAAT 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TCAAGTAACGGTGTCTCTCTCTCCTTCCTCCTCGCTTGGGTCGCCGGTGATATCTTCAAT 309
Query 241 CTTGTCGGTTGTCTTCTTGAACCAGCTACTTTGCCGACTCAGTTCTACACAGCCTTGCTC 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CTCGTCGGTTGTCTTCTTGAACCAGCTACTTTGCCGACTCAGTTCTACACAGCCTTGCTT 369
Query 301 TACACAGTGAGCACTGTGGTATTGGTGATCCAGACTATTTACTACGATTACATCTACAAA 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TACACAGTGAGCACTGTAGTATTGGTGATCCAGACTATTTACTACGATTACATCTACAAA 429
Query 361 CTTTGTAGGCATGGACGTACCAAGATTTGTCAAAAGGATGATGAAGATGAAGAGAAGAGA 420
|||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 430 CTTTGTAGACATAGACGTACCAAGATTTGTCAAAAGGATGAGGAAGATGAAGAGAAGAGA 489
Query 421 CCATTGAAACCACCAAAGACGATGGGATCTGCTATTTCCATCCCAGGAGGATCTTACAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CCATTGAAACCACCAAAGACGATGGGATCTGCTATTTCCATCCCAGGAGGATCTTACAAA 549
Query 481 GATTCTCCTCGGAGAGAGTTCTATTACACGTCGGCGAGATCGTTGGCCGGAAGTGGCACA 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GATTCTTCTCGGAGAGAGTTCTATTACACGTCGGCGAGATCGTTGGCCGGAAGTGGCACA 609
Query 541 CCTCCCTTAAGAACATCGTATTTTCGAGTGGCTAAGAGTGGCCCTTCGGCTCTAGCAATA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 610 CCTCCCTTAAGAACATCGTATTTTCGAGTGGCTAAGAGTGGCCCTTCGGCTCTGGCAATC 669
Query 601 GATAATG--G-TTCGTCATCGGAAGAAGAAGAGGCAATGTCGACGTGTCCTG 649
|| |||| | |||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 670 GACAATGATGGTTCGTCATCGGACGAAGATGAGACAATGTCGACGTGTCCTG 721
Score = 826 bits (447), Expect = 0.0
Identities = 521/556 (94%), Gaps = 7/556 (1%)
Strand=Plus/Plus
Query 649 GCAGGTTTTGGAACGTTTTTGGCTGCATCAGCTAGTCTTCCGCTTCAGGCAAAGAGCTTA 708
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 769 GCAGGTTTTGGAACGTTTTTGGCTGCATCGGCTAGTCTTCCGCTTCAGGCAAAGAGCTTA 828
Query 709 GCGGAAAAGTACTG-GCATGCTTCAAGCAGACGGCTTCTAAATGAGAGAAGAGTAGAGCA 767
|||||||| || || |||||||||||||||||||||||||| || |||| |||||||||
Sbjct 829 GCGGAAAAATA-TGCACATGCTTCAAGCAGACGGCTTCTAAACGAAAGAATAGTAGAGCA 887
Query 768 CAGCGCATTGGGACAATGGTTGGGATGGCTAATGGCCGCCATTTACATGGGCGGTCGCAT 827
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TAGCGCGTTGGGACAATGGTTGGGATGGCTAATGGCCGCCATTTACATGGGCGGTCGCAT 947
Query 828 CCCTCAGATCTGGCTCAACATCAAAAGAGGAAGCGTTGAGGGTTTGAATCCACTGATGTT 887
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 948 TCCTCAGATTTGGCTCAACATCAAAAGAGGAAGCGTCGAGGGTTTGAATCCACTGATGTT 1007
Query 888 CATTTTCGCTCTAGTAGCCAATGCAACATATGTTGGTAGTATTCTTGTCCGAACAACTGA 947
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CATCTTCGCGCTAGTAGCCAATGCAACATATGTTGGTAGTATTCTTGTCCGAACAACTGA 1067
Query 948 ATGGGAGAACATCAAACCAAACCTTCCTTGGTTGCTTGATGCTATTGTCTGCGTCGTACT 1007
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 ATGGGACAACATCAAACCAAACCTTCCTTGGTTGCTTGATGCTATTGTCTGCGTCGTACT 1127
Query 1008 CGATCTATTTATAATACTGCAGTATATCTACTACAAGTATTGCAGGATGCAGAGCTTAGA 1067
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1128 AGATCTATTTATAATACTGCAGTATATCTACTACAAGTATTGCAGGATAAAGAGCTTGGA 1187
Query 1068 AAGCAAAGAAGAAGACGTCTATGGAGACTATGTGGAAGCAAGCAAAACTTTTGTTTCGTG 1127
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 AAGCAGAGAAGAAGACGCCTATGGAGACTATGTGGAAGCAAGCAAAACTTTTGTTTCGTG 1247
Query 1128 AATCACTATTTACT-TTACAACGATCATTTTATTTTCTTTTGGCCTTATCCTTATGTATT 1186
|||||||||||| | |||||| ||| |||| ||||||||||| |||| | || ||||
Sbjct 1248 AATCACTATTTA-TGTTACAAGGATAATTTGATTTTCTTTTGATCTTAAG-T-AT-TATT 1303
Query 1187 GATTTCAGAGTGTATG 1202
||||||| ||||||||
Sbjct 1304 GATTTCATAGTGTATG 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5