BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490952
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate syn... 1888 0.0
AT2G18620.1 | Symbols: | Terpenoid synthases superfamily prote... 556 1e-157
AT4G36808.1 | Symbols: | Potential natural antisense gene, loc... 350 3e-95
AT2G18640.1 | Symbols: GGPS4 | geranylgeranyl pyrophosphate syn... 322 6e-87
> AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate synthase
1 | chr4:17343374-17344865 FORWARD LENGTH=1492
Length=1492
Score = 1888 bits (1022), Expect = 0.0
Identities = 1231/1325 (93%), Gaps = 42/1325 (3%)
Strand=Plus/Plus
Query 59 ATGGCTTCAGTGACACTAGGTTCATGGATCGTTGTTCACCACAatcatcatcatcatcat 118
|||||||||||||| |||||||||||||| |||||||||||| || || ||||||||
Sbjct 140 ATGGCTTCAGTGACTCTAGGTTCATGGATTGTTGTTCACCAC---CA-CA--ATCATCAT 193
Query 119 catcatcttccttgttcaat-cttcaccaaatccagatccagatcttcttcttcttcttc 177
|||| | | | |||||| ||| |||||||||||||||||| |||| || |
Sbjct 194 CATC--CAT-C---TTCAATCCTT-ACCAAATCCAGATCCAGA------TCTT-GTC--C 237
Query 178 tCCCATAACTCTTACTAAACCCATCT-CTCTTCGTTCAAAACGCACCG-TT--TCATCTT 233
| |||||||||||||||||||||| || |||| ||||||||||||| || |||||||
Sbjct 238 T---ATAACTCTTACTAAACCCATCTCCT-TTCGATCAAAACGCACCGTTTCATCATCTT 293
Query 234 CTTCAATCGAGACTTCTTCTTCCGTTGTTACAAAAGAAGACAATCTCCACAAATCTGAAC 293
|||||||| | ||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 294 CTTCAATC--G-TTTCTTCTTCCGTTGTTACAAAAGAAGACAATCTACGCCAATCTGAAC 350
Query 294 CATCCTCTTTCGATTTCATGTCGTACATCATTACCAAAGCCGAATCAGTCAACAAAGCTT 353
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 351 CATCCTCTTTCGATTTCATGTCGTACATCATCACCAAAGCCGAATTAGTCAACAAAGCTT 410
Query 354 TAGATTCAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCACGAAGCCATGCGTTACTCTC 413
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 411 TAGATTCAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCACGAAGCGATGCGTTACTCTC 470
Query 414 TTCTCGCCGGTGGCAAAAGAGTTAGACCAGTTCTCTGCATCGCCGCTTGTGAACTCGTCG 473
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 471 TTCTCGCCGGTGGCAAAAGAGTTAGACCAGTTCTCTGCATCGCTGCTTGTGAACTCGTCG 530
Query 474 GCGGCGATGAATCAACCGCTATGCCAGCGGCCTGCGCCGTCGAGATGATTCACACCATGT 533
| || || |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 531 GAGGTGAAGAATCAACCGCTATGCCAGCAGCTTGCGCCGTCGAGATGATTCACACCATGT 590
Query 534 CGTTGATCCACGACGATCTACCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGA 593
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CGTTGATCCACGACGATCTCCCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGA 650
Query 594 CGAACCACAAAGTGTTCGGTGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTCTCTCGT 653
| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 651 CCAACCACAAAGTGTTTGGTGAAGACGTCGCTGTTTTAGCCGGAGACGCGCTTCTCTCTT 710
Query 654 TCGCTTTCGAGCATTTAGCGTCGGCGACTTCTTCTGATGTTGTATCTCCGGTGAGAGTGG 713
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 711 TCGCTTTCGAGCATTTAGCTTCGGCGACGAGTTCTGATGTTGTTTCTCCGGTGAGAGTGG 770
Query 714 TTCGAGCCGTTGGAGAATTGGCTAAAGCAATTGGAACAGAAGGGTTAGTGGCGGGTCAAG 773
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 771 TTCGAGCCGTTGGAGAATTGGCTAAAGCGATAGGAACAGAAGGGTTAGTGGCGGGTCAAG 830
Query 774 TCGTTGACATTAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCATTTGGAGT 833
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TCGTGGATATTAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCATTTGGAGT 890
Query 834 TTATCCATTTGCATAAAACGGCGGCGTTGCTTGAAGCCTCTGCGGTTTTGGGAGCGATCG 893
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |
Sbjct 891 TTATCCATTTGCATAAAACGGCGGCGTTGCTTGAAGCTTCTGCTGTTTTGGGAGCTATTG 950
Query 894 TTGGTGGAGGAAGTGATGATGAGATCGAGAGGTTAAGGAAGTTTGCGAGATGTATTGGTT 953
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 951 TTGGTGGAGGAAGTGATGATGAGATTGAGAGGTTAAGAAAGTTTGCGAGATGTATTGGTT 1010
Query 954 TGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTAGGGA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTAGGGA 1070
Query 1014 AAACTGCTGGGAAAGATTTGATTGCGGATAAATTGACGTATCCTAAGATTATGGGTTTGG 1073
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1071 AAACTGCTGGGAAAGATTTGATTGCTGATAAGTTGACGTATCCTAAGATTATGGGTTTGG 1130
Query 1074 AGAAATCGAGAGAGTTTGCTGACAAGTTGAATAGAGAGGCTCGTGATCAGCTTTTAGGGT 1133
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1131 AGAAATCGAGAGAGTTTGCTGAGAAATTGAATAGAGAGGCTCGTGATCAGCTTTTAGGGT 1190
Query 1134 TTGATTCTGATAAGGCTGCTCCTTTGTTGGCTTTGGCTAATTACATTGCCTATAGACAGA 1193
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TTGATTCTGATAAGGTTGCTCCTTTGTTGGCTTTGGCTAATTACATTGCCTATAGACAGA 1250
Query 1194 ACTGATT-GTGTTCCGATTCCTTTTGTCGGGAATCATTA---GACTGAAATTGTAGAAAT 1249
||||||| |||||| |||||||||||||||||||||||| || || ||||||||||||
Sbjct 1251 ACTGATTTGTGTTC-GATTCCTTTTGTCGGGAATCATTATTAGATTGGAATTGTAGAAAT 1309
Query 1250 CTCGGACAGGTTCT--AGAGTTTGTTTGTGTAATCATCTCTATGTTTCCATGTACTaaaa 1307
|||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1310 CTCGGACAGGTTCTCTAGAGTTTGTTGGTGTAATCATCTCTATGTTTTCATGTACTAAAA 1369
Query 1308 aaaaCTGGATAGTAATGGATGCAATATTAAGAGGTTCATGTGTTTGTAATAGAGTCCCTG 1367
|| |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1370 AATT-TGGATAGTAATGGATGAAATATGAAGAGGTTCATGTGTCTGTAATAGAGTCCCTG 1428
Query 1368 GTTGG 1372
|||||
Sbjct 1429 GTTGG 1433
> AT2G18620.1 | Symbols: | Terpenoid synthases superfamily protein
| chr2:8078288-8079360 FORWARD LENGTH=1073
Length=1073
Score = 556 bits (301), Expect = 1e-157
Identities = 716/912 (79%), Gaps = 45/912 (5%)
Strand=Plus/Plus
Query 301 TTTCGATTTCATGTCGTACATCATTACCAAAGCCGAAT-CAGTCAACAAAGCTTTAGATT 359
||||||||||| ||| ||||| || |||| | ||| | ||||| ||||| | || |
Sbjct 185 TTTCGATTTCACGTCATACATGATCGGAAAAG-CTAATGCCGTCAATGAAGCTCTCGACT 243
Query 360 CAGCTGTTC-CTCTCCGTGAGCCACTCAAGATCCACGAAGCCATGCGTTACTCTCTTCTC 418
| || | || | ||||| || ||| |||||||||| ||||| || |||||||| ||||||
Sbjct 244 CCGCCG-TCTCGCTCCGAGAACCAATCAAGATCCATGAAGCGATACGTTACTCGCTTCTC 302
Query 419 GCCGGTGGCAAAAGAGTTAGACCAGTTCTCTGCATCGCCGCTTGTGAACTCGTCGGCGGC 478
||| | |||||| |||| ||||| || ||||| ||||| || ||||| | || ||||||
Sbjct 303 GCCAGAGGCAAACGAGTGAGACCCGTGCTCTGTATCGCAGCGTGTGAGTTAGTGGGCGGC 362
Query 479 GATGAATCAACCGC-TATGCCAGCGGCCTGCGCCGTCGAGATGATTCACACCATGTCGTT 537
|| ||||| || | | || ||||| |||||||| || ||||| ||||| ||||||||
Sbjct 363 GAAGAATCCGTGGCGT-TACCGGCGGCGTGCGCCGTGGAAATGATCCACACAATGTCGTT 421
Query 538 GATCCACGACGATCTACCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGACGAA 597
||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 422 GATCCACGACGATCTTCCATGTATGGATAACGACGATCTCCGCCGCGGAAAACCAACGAA 481
Query 598 CCACAAAGTGTTCGGTGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTCTCTCGTTCGC 657
||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 482 CCACAAAGTTTTCGGTGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTATATCGTTCGC 541
Query 658 -TTTCGAGCATTTAGCGTCGGCGACTTCTTCTGATGTTGTATCTCCGG-TGAGAGTGGTT 715
||| ||||| ||||| || | || || | | || |||||| | ||||| |||
Sbjct 542 GTTT-GAGCACTTAGCAACGTCAACGGCT---G-T-TT----CTCCGGCT-AGAGTTGTT 590
Query 716 CGAGCCGTTGGAGAATTGGCTAAAGCAATTGGAACAGAAGGGTTAGTGGCGGGTCAAGTC 775
||||| | ||||| || || ||||| |||||| || ||||| | ||||||||||||||
Sbjct 591 CGAGCAATCGGAGAGTTAGCGAAAGCCATTGGATCAAAAGGGCTCGTGGCGGGTCAAGTA 650
Query 776 GTTGA-CATTAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCAT-TTGGAGT 833
|| || | | | |||| ||| | || |||||||||||| |||||| | ||| |||
Sbjct 651 GTGGATC-TAACCAGTGGAGGAATGGACCAAAACGACGTCGGCTTAGAGGTTCTTG-AGT 708
Query 834 TTATCCAT-TTGCATAAAACGGCGGCGTTGCTT-GAAGCCTCTGCGGTTTTGGGAGCGAT 891
||||||| || |||||||| || | |||| || || || || |||| || ||||| ||
Sbjct 709 TTATCCACGTT-CATAAAACCGCCGTGTTG-TTAGAGGCGGCTACGGTGTTAGGAGCCAT 766
Query 892 CGTTGGTGGAGGAAGTGATGATGA-GATCGAGAGGTTAAGGAAGTTT-GCGAGATGTATT 949
||||||||| || |||||| || | | |||| | | || ||| || |||||||| |||
Sbjct 767 CGTTGGTGGTGGTTCTGATGAAGAAGTT-GAGAAGCTGAG-AAGATTCGCGAGATGCATT 824
Query 950 GGTTTGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTA 1009
|| ||||||||||||||||| || ||||| ||||| |||||||| |||||| | || ||
Sbjct 825 GGATTGTTGTTTCAGGTGGTGGACGATATTTTGGACGTGACGAAGTCGTCGGAGGAATT- 883
Query 1010 GGGAAA-ACTGCTGGGAAAGATTTGATTGCGGATAAATTGACGTATCCTAAGATTA-TGG 1067
|||||| || || || |||||| ||||||| ||||| |||||||||| || | || |||
Sbjct 884 GGGAAAGACCGCCGGAAAAGATCTGATTGCCGATAAGCTGACGTATCCGAA-ACTAATGG 942
Query 1068 GT-TTGGAGAAATCGAGAGAGTTTGCTGACAAGTTGAAT-AGAGAGGCTCGTGATCAGCT 1125
|| ||| ||||||| | ||| ||||| || |||||| | || || |||| || |||||
Sbjct 943 GTCTTG-AGAAATCTAAAGACTTTGCAGATAAGTTGT-TGAGCGATGCTCACGAACAGCT 1000
Query 1126 TT-TAGGGTTTGATTCTGA-TA-AGGCTGCTCCTTTGTTGGCTTTGGCTAATTACATTGC 1182
| | ||||||||||| || || || | ||||| | ||||||||||||||||||||
Sbjct 1001 TCAT-GGGTTTGATTC-GAGTAGAGT-TAAACCTTTACTAGCTTTGGCTAATTACATTGC 1057
Query 1183 CTATAGACAGAA 1194
| | ||||||||
Sbjct 1058 CAAAAGACAGAA 1069
> AT4G36808.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT4G36810 | chr4:17343162-17343824 REVERSE
LENGTH=403
Length=403
Score = 350 bits (189), Expect = 3e-95
Identities = 296/341 (87%), Gaps = 34/341 (10%)
Strand=Plus/Minus
Query 59 ATGGCTTCAGTGACACTAGGTTCATGGATCGTTGTTCACCACAatcatcatcatcatcat 118
|||||||||||||| |||||||||||||| |||||||||||| || || ||||||||
Sbjct 312 ATGGCTTCAGTGACTCTAGGTTCATGGATTGTTGTTCACCAC---CA-CA--ATCATCAT 259
Query 119 catcatcttccttgttcaat-cttcaccaaatccagatccagatcttcttcttcttcttc 177
|||| | | | |||||| ||| |||||||||||||||||| |||| || |
Sbjct 258 CATC--CAT-C---TTCAATCCTT-ACCAAATCCAGATCCAGA------TCTT-GTC--C 215
Query 178 tCCCATAACTCTTACTAAACCCATCT-CTCTTCGTTCAAAACGCACCG-TT--TCATCTT 233
| |||||||||||||||||||||| || |||| ||||||||||||| || |||||||
Sbjct 214 T---ATAACTCTTACTAAACCCATCTCCT-TTCGATCAAAACGCACCGTTTCATCATCTT 159
Query 234 CTTCAATCGAGACTTCTTCTTCCGTTGTTACAAAAGAAGACAATCTCCACAAATCTGAAC 293
|||||||| | ||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 158 CTTCAATC--G-TTTCTTCTTCCGTTGTTACAAAAGAAGACAATCTACGCCAATCTGAAC 102
Query 294 CATCCTCTTTCGATTTCATGTCGTACATCATTACCAAAGCCGAATCAGTCAACAAAGCTT 353
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 101 CATCCTCTTTCGATTTCATGTCGTACATCATCACCAAAGCCGAATTAGTCAACAAAGCTT 42
Query 354 TAGATTCAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCAC 394
|||||||||||||||||||||||||||||||||||||||||
Sbjct 41 TAGATTCAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCAC 1
> AT2G18640.1 | Symbols: GGPS4 | geranylgeranyl pyrophosphate synthase
4 | chr2:8083740-8084888 REVERSE LENGTH=1149
Length=1149
Score = 322 bits (174), Expect = 6e-87
Identities = 646/867 (75%), Gaps = 60/867 (7%)
Strand=Plus/Plus
Query 301 TTTCGATTTCATGTCGTACATCATTACCAAAGCCGA-ATCAGTCAACAAAGCTTTAGATT 359
||||||||||| ||||||| || | |||||| || | || | |||| ||| ||||||
Sbjct 250 TTTCGATTTCAAACCGTACATGATCAGCAAAGCAGAGA-CAATAAACAGAGCATTAGATG 308
Query 360 CAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCACGAA-GCCATGCGTTACTCTCTTCTC 418
||| |||| || |||||||||||| |||||| || || ||||||||| | |||||
Sbjct 309 AAGCAATTCCACTTATTGAGCCACTCAACATCCAC-AAGGCAATGCGTTACGCGATTCTC 367
Query 419 GCCGGTGGCAAAA-GAGTTAGACCAGTTCTCTGCATCGCCGCTTGTGAACTCGTCGGCGG 477
|| || || |||| | || || ||| | |||||| | |||||||| || || ||||||||
Sbjct 368 GCAGGCGG-AAAACGTGTCAGGCCAATACTCTGCCTAGCCGCTTGCGAGCTAGTCGGCGG 426
Query 478 CGATGAATC-AACCGCTATGCCAGCGGCCTGCGCCGTCGAGATGATTCACACCATGTCGT 536
|| | | | || || | |||||| || || || || ||||||||||| |||||
Sbjct 427 GGAAG-AGCGTTTAGCGATTCAAGCGGCTTGTGCAGTTGAAATGATTCACACAATGTCAC 485
Query 537 TGATCCACGACGATCTACCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGACGA 596
| ||| | |||||||| ||||||||||| |||||||||||||| || || ||||| || |
Sbjct 486 TCATCAAAGACGATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGGAAACCAAC-A 544
Query 597 AC-CACAAAGTGTTCGGTG-AAGACGTCGCGGTTTTAGCCGGAGACGCGCTTCTCTCG-T 653
|| || ||||| ||||| | ||| ||| || | | |||| | ||| ||| | | | |
Sbjct 545 ACACATAAAGTCTTCGGAGAAAG-CGTAGCCATACTCTCCGGCGGCGCACTT-T-TAGCT 601
Query 654 -TCGCTTTCGAGCATTTAGCGTCGGCGACTTCTTCTGATGTTGTATC-TCCGGTGAGAGT 711
| |||||||||||||| | | | || |||| | || || ||| || | |
Sbjct 602 CTAGCTTTCGAGCATTT---GAC-G-GA----AGCTGACG-TG--TCATCC-AAGAAAAT 648
Query 712 GGTTCGAGCCGTTGGAGAATTGGCTAAAG-CAATTGGAACAG-AAGGGTTAGTGGCGGGT 769
||||||||||||| |||||||||| ||| | |||||||| | |||| | || |||||
Sbjct 649 GGTTCGAGCCGTTAAAGAATTGGCT-AAGTCTATTGGAAC-GAAAGGACTCGTAGCGGGA 706
Query 770 CAAGTCG-TTGACATT-AGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCAT- 826
| || || || || || ||||||||||| || |||||| ||||| |||||| ||
Sbjct 707 C-AGGCGAAGGA-TTTAAGCAGTGAAGGGTTGGAACAAAACGATGTCGGATTAGAGGATC 764
Query 827 TTGGAGTTTATCCA-TTTGCATAAAA-CGGCGGCGTTGCTTGAAGCCTCTGCGGTTTTGG 884
|| || | ||| || || ||||||| ||| ||||||||||||| ||||||||| | |
Sbjct 765 TT-GAATATATTCACGTT-CATAAAACCGG-TTCGTTGCTTGAAGCATCTGCGGTTATCG 821
Query 885 GAGCGATCGTTGGTGGAGGAAGTGATG-ATGAGATCGAG-AGGTTAAGGAAGTTTGCGAG 942
||||| | | || || |||| || | | ||||| ||| | | | || || ||||||||
Sbjct 822 GAGCGGTTATAGGCGGTGGAACAGA-GAAAGAGATAGAGAAAG-TGAGAAACTTTGCGAG 879
Query 943 ATGTATTGGTTTGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAA 1002
||||| || |||||||||||||||||||||||||||||||||| ||| || |||||| |
Sbjct 880 GTGTATCGGATTGTTGTTTCAGGTGGTTGATGATATCTTGGATGAGACCAAGTCGTCGGA 939
Query 1003 AGAGTTAGGGAAAA-CTGCTGGGAAAGATTTGATTGC-GGATAAATTGACGTATCCTAAG 1060
|| || ||||||| | || || |||||| | | || ||| || |||||||||| ||
Sbjct 940 GGAATT-GGGAAAAACCGCCGGAAAAGATAAGGTCGCCGGA-AAGCTGACGTATCCAAA- 996
Query 1061 ATT-ATGGGT-TTGGAGAAATCGAGAG-AGTTTGCTG-ACAAGTTGAATAGAGAGGCTCG 1116
| | || ||| ||| ||||||| | || |||||| || | |||||||| ||||| || |
Sbjct 997 AGTGATTGGTGTTG-AGAAATCTA-AGGAGTTTG-TGGAGAAGTTGAAGAGAGATGCGAG 1053
Query 1117 TGATCAGCTTTTAGGGTTTGATTCTGA 1143
|| || ||| |||||||||||||||
Sbjct 1054 AGAACATCTTCAAGGGTTTGATTCTGA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5