BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490956
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36770.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2270 0.0
> AT4G36770.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr4:17330146-17331624 REVERSE LENGTH=1479
Length=1479
Score = 2270 bits (1229), Expect = 0.0
Identities = 1361/1426 (95%), Gaps = 3/1426 (0%)
Strand=Plus/Plus
Query 1 AAGAAAGCAGATTACTaaaaaaaCTCTTGAGGACCATGGAACTTCACGGAGCTCTAGTGG 60
||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAAGCATATCACTAAAAAAACTC-TGAGGACCATGGAACTTCACGGAGCTCTAGTGG 59
Query 61 CTAGTCCGGGTATGGGACATGCCGTACCCATCTTAGAACTCGGTAAACATCTCCTGAACC 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTAGTCCGGGCATGGGACATGCCGTACCCATCTTAGAACTCGGTAAACATCTCCTGAACC 119
Query 121 ATAACGGTTTCGACCGTATCACCGTCTTCCTAGTCACAGACGATATCTCACGTTCGAAAT 180
| |||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 120 ACCACGGGTTCGACCGTGTCACTGTCTTCCTAGTCACAGACGATGTCTCACGTTCGAAAT 179
Query 181 CCTTAATTGGCAAAACGTTAAAGGAAGAAGATCCAAAATTTGTGATCAAGTTTATTCAAC 240
|| ||||||| |||||||| | |||||||||||||||||||||||||| |||||||| ||
Sbjct 180 CCCTAATTGGAAAAACGTTGATGGAAGAAGATCCAAAATTTGTGATCAGGTTTATTCCAC 239
Query 241 TTGATGTTTCGGGTCAAGATCTGAGCGGTTCTCTTTTGACTAAACTAGCAGAGATGATGA 300
| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 240 TCGATGTTTCGGGTCAAGATCTGAGTGGTTCACTATTGACTAAACTAGCAGAGATGATGA 299
Query 301 GGAAGGCAGTACCGGAGATCAGGTCTGCAGTCATGGAGTTAGAACCACGGCCTAGGGTTT 360
|||||||| |||| ||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 300 GGAAGGCATTACCAGAGATCAAGTCTTCAGTCATGGAGTTAGAACCGCGGCCTAGGGTTT 359
Query 361 TTGTAGTTGACTTGTTGGGCACAGAAGCTTTAGTGGTGGCTAGGGAGCTTCAGATCATGA 420
| |||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||
Sbjct 360 TCGTAGTTGACTTGTTGGGCACGGAAGCTTTAGAGGTGGCTAAGGAGCTTGGGATCATGA 419
Query 421 GAAAACATGTTCTGGTTACTACCAGTGCTTGGTTTCTAGCTTTCACGGTTTATATGGCGA 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 GAAAACATGTTCTGGTTACTACCAGTGCTTGGTTTCTAGCTTTTACGGTTTATATGGCGA 479
Query 481 GTCTTGACAAGCAGGAGTTGTATAAGCAGTTGAGTAGCATAGGAGCATTGCTTATACCCG 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTCTTGACAAACAGGAGTTGTATAAGCAGTTGAGTAGCATAGGAGCATTGCTTATACCCG 539
Query 541 GATGCAGCCCGGTTAAGTTTGAGCGGGCTCAAGATCCGAGTAAATATATTCGGGAACTCG 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 GATGCAGCCCGGTTAAGTTTGAGCGGGCTCAAGATCCGAGAAAATATATTCGGGAACTCG 599
Query 601 CCGAGTCTCAGCGAATTGGGGCTGAGGTGATAACCGCAGATGGGGTCTTTGTGAATACGT 660
| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 600 CTGAGTCTCAGCGTATTGGGGATGAGGTGATAACCGCAGATGGGGTGTTTGTGAATACGT 659
Query 661 GGCACAGTCTGGAGCAAGTGACGATCGGGTCTTTCCTGGATCCAGAGAATCTCGGTCGGG 720
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 660 GGCACAGTCTGGAGCAAGTGACCATCGGGTCTTTCTTGGATCCAGAGAATCTCGGTCGGG 719
Query 721 TTATGAGAGGAGTGCCCGTTTATCCTGTTGGACCGCTGGTTAGACCAGCAGAACCGGGTT 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 TTATGAGAGGAGTGCCGGTTTATCCTGTTGGACCGCTGGTTAGACCAGCAGAACCAGGTT 779
Query 781 TGAAACATGGCGTGCTGGACTGGCTTGACTTACAACCCAAAGAGTCAGTGGTTTATGTTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGAAACATGGCGTGCTGGACTGGCTTGACTTACAACCCAAAGAGTCAGTGGTTTATGTTT 839
Query 841 CTTTTGGGAGTGGTGGGGCACTAACCGCCGAGCAGACGAACGAGCTGGCTTACGGTTTGG 900
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 840 CTTTTGGGAGTGGTGGGGCACTAACCTTCGAGCAGACAAACGAGCTGGCTTACGGTTTGG 899
Query 901 AGCTGACTGGCCACAGATTTGTTTGGGTAGTCAGACCACCGGCTGAAGACGACCCATCTG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 AGCTGACTGGCCACAGATTTGTTTGGGTAGTCAGACCACCGGCTGAAGACGACCCATCGG 959
Query 961 CATCAATGTTCGACAAGACCAAGAATGAGACAGAACCACTCGATTTCTTACCCAAAGGGT 1020
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 960 CATCAATGTTCGACAAGACCAAGAATGAGACAGAACCTCTCGATTTCTTACCCAACGGGT 1019
Query 1021 TTCTAGACCGGACCAAAGACATCGGTTTGGTGGTCCGGACATGGGCCCCACAAGAGGAGA 1080
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1020 TTCTAGACCGAACCAAAGACATCGGTTTGGTGGTCCGTACATGGGCACCACAAGAAGAGA 1079
Query 1081 TTCTGGCACACAAGTCAACAGGAGCGTTTGTGACTCACTGCGGATGGAACTCAGTTTTGG 1140
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 TTCTGGCACACAAGTCAACAGGAGGGTTTGTGACTCACTGCGGATGGAACTCAGTTTTGG 1139
Query 1141 AGAGTATTGTGAATGGTGTGCCAATGGTAGCTTGGCCGTTGTACTCAGAGCAAAAGATGA 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1140 AGAGTATTGTGAATGGTGTGCCAATGGTAGCTTGGCCGTTGTACTCAGAGCAGAAGATGA 1199
Query 1201 ACGC-ATGGATGGTTTCTGGGGAGCTAAAGATTGCGTTGCGGGTTAATGTTGCAGATGGG 1259
|||| | ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1200 ACGCGA-GGATGGTTTCTGGGGAGCTAAAGATTGCGTTGCAGATTAATGTTGCAGATGGG 1258
Query 1260 ATTGTaaagaaggaagagatagttgaaatggtgaagagagtgatggatgaagaagaagga 1319
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATTGTAAAGAAGGAGGTGATAGCTGAAATGGTGAAGAGAGTGATGGATGAAGAAGAAGGA 1318
Query 1320 aaagagatgagaaagaatgttaaggaactgaagaagacagcagaagaagctctcaagaag 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1319 AAAGAGATGAGAAAGAATGTTAAGGAACTGAAGAAGACAGCAGAAGAAGCTCTCAACATG 1378
Query 1380 aGTCACATTCCATCTGCTTCCTTCACCTAAAACTAATTAGCAAAAA 1425
| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1379 ACTCACATTCCATCTGCTTACTTCACCTAAAACTAATTAGCAAAAA 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5